Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2023-09-21
Page range: 69-78
Abstract views: 145
PDF downloaded: 7

Digitopodium citri sp. nov.; an endophytic species associated with Citrus medica L. var. sarcodactylis from Guangdong Province, China

Innovative Institute for Plant Health; Zhongkai University of Agriculture and Engineering; Guangzhou 510225; P.R. China
Innovative Institute for Plant Health; Zhongkai University of Agriculture and Engineering; Guangzhou 510225; P.R. China
Innovative Institute for Plant Health; Zhongkai University of Agriculture and Engineering; Guangzhou 510225; P.R. China
Research Center of Microbial Diversity and Sustainable Utilization; Chiang Mai University; Chiang Mai 50200; Thailand; Department of Biology; Faculty of Science; Chiang Mai University; Chiang Mai 50200; Thailand
Innovative Institute for Plant Health; Zhongkai University of Agriculture and Engineering; Guangzhou 510225; P.R. China
Eudicots Fingered citron Phylogeny South Chinese fungi Herpotrichiellaceae Taxonomy

Abstract

Fingered citron (Citrus medica var. sarcodactylis), is one of the fragrant herbs of the family Rutaceae. This plant is widely cultivated for its medicinal properties, food and flavoring uses, ornamental value, and cultural significance. In this study, we collected fruits of fingered citron in Deqing County, Zhaoqing City, Guangdong Province, China, and several isolates of an endophytic, pigmented hyphomycetes species were obtained. The DNA sequences of our isolates were compared and analysed with those in the NCBI database, revealing that they are closely related to Digitopodium. Maximum likelihood, Maximum parsimony and Bayesian analyses of combined LSU and ITS sequence data were performed to clarify the phylogenetic affinities of the species. Based on the distinctive morphological characters and phylogenetic support, a new species, Digitopodium citri sp. nov. is introduced. The new species is compared with other similar taxa and comprehensive descriptions and illustrations are provided. This is the first endophytic species of Digitopodium.

References

  1. Al-Kalifawi, E.J. (2015) The antimicrobial activity of essential oils of Al-Abbas’s (AS) hand fruit peel (Citrus medica) var. sarcodactylis Swingle. Journal of Natural Sciences Research 5: 19–27. [https://www.researchgate.net/publication/329949750_The_Antimicrobial_Activity_of_Essential_Oils_of_Al-Abbass_AS_Hand_Fruit_Peel_Citrus_Medica_var_Sarcodactylis_Swingle]
  2. Chan, Y.Y., Li, C.H., Shen, Y.C. & Wu, T.S. (2010) Anti-inflammatory principles from the stem and root barks of Citrus medica.Chemical & pharmaceutical bulletin 58: 61–65. https://doi.org/10.1248/cpb.58.61
  3. Chan, Y.Y., Wu, T.S. & Kuo, Y.H. (2009) Chemical constituents and cytotoxicity from the stem bark of Citrus medica. Heterocycles 78: 1309–1316. https://doi.org/10.3987/COM-08-11630
  4. Chen, Z.Y., Wang, Y.J., Xu, Q.Y., Han, X.X., Hu, Q.M., Yang, L., Chen, E.R., Liao, F.L. & Guo, W.D. (2019) CmsCRC is involved in regulated fingers stretch in Citrus medica L. var. sarcodactylis Swingle and activated under lower temperature. Acta Horticulturae Sinica 46: 2143–2154. https://doi.org/10.16420/j.issn.0513-353x.2019-0076
  5. Colmán, A.A., Evans, H.C., Salcedo-Sarmiento, S.S., Braun, U., Belachew-Bekele, K. & Barreto, R.W. (2021) A fungus-eat-fungus world: Digitopodium, with particular reference to mycoparasites of the coffee leaf rust, Hemileia vastatrix. IMA Fungus 12: 1. https://doi.org/10.1186/s43008-020-00052-w
  6. Crous, P.W., Shivas, R.G., Quaedvlieg, W., van der Bank, M., Zhang, Y., Summerell, B.A. ,Guarro, J., Wingfield, M.J., Wood, A.R., Alfenas, A.C., Braun, U., Cano-Lira, J.F., García, D., Marin-Felix, Y., Alvarado, P., Andrade, J.P., Armengol, J., Assefa, A., Breeÿen, A. den., Camele, I., Cheewangkoon, R., De Souza, J.T., Duong, T.A., Esteve-Raventós, F., Fournier, J., Frisullo, S., García-Jiménez, J., Gardiennet, A., Gené, J., Hernández-Restrepo, M., Hirooka, Y., Hospenthal, D.R., King, A., Lechat, C., Lombard, L., Mang, S.M., Marbach, P.A.S., Marincowitz, S., Marin-Felix, Y., Montaño-Mata, N.J., Moreno, G., Perez, C.A., Pérez Sierra, A.M., Robertson, J.L., Roux, J., Rubio, E., Schumacher, R.K., Stchigel, A.M., Sutton, D.A., Tan, Y.P., Thompson, E.H., Linde, E. van der., Walker, A.K., Walker, D.M., Wickes, B.L., Wong, P.T.W. & Groenewald, J.Z. (2014) Fungal Planet description sheets: 214–280. Persoonia 32: 184–306. https://doi.org/10.3767/003158514x682395
  7. Crous, P.W., Wingfield, M.J., Burgess, T.I., Carnegie, A.J., Hardy, G.E.S.J., Smith, D. & Houbraken, J. (2017) Fungal Planet description sheets: 625–715. Persoonia 39: 270–467. https://doi.org/10.3767/persoonia.2017.39.11
  8. Dong, Z., Manawasinghe, I.S., Huang, Y., Shu, Y., Phillips, A.J.L., Dissanayake, A.J., Hyde, K.D., Xiang, M.M. & Luo, M. (2021) Endophytic diaporthe associated with Citrus grandis cv. Tomentosa in China. Frontiers in Microbiology 11: 609387. https://doi.org/10.3389/fmicb.2020.609387
  9. Hall, T.A. (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98. [https://www.academia.edu/2034992/BioEdit_a_user_friendly_biological_sequence_alignment_editor_and_analysis_program_for_Windows_95_98_NT]
  10. He, H., Pan, C.G., Wu, L.R., Huang, H.B. & Zhang, G.F. (2005) Study on the application of polymerase chain reaction technique to detect the pathogen of Guangfoshou Huanglong disease. Journal of Guangzhou University of Traditional Chinese Medicine 6: 61–63. [In Chinese] https://doi.org/10.13926/j.cnki.apps.2005.02.017
  11. He, Y.F. & Jin, X.L. (2001) Review of research progress in Citrus medica L. var. sarcodactylis Swingle with reference to prediction of development prospects. Economic Forest Researches 19: 42–43. [In Chinese] [https://kns.cnki.net/kns8/Detail?sfield=fn&QueryID=1&CurRec=2&DbCode=CJFD&dbname=CJFD2001&filename=JLYJ200104016&urlid=&yx=]
  12. Heuchert, B., Braun, U. & Schubert, K. (2005) Morphotaxonomic revision of fungicolous Cladosporium species (Hyphomycetes). Schlechtendalia 13: 1–78. [https://www.researchgate.net/profile/Uwe-Braun-2/publication/269994858_Morphotaxonomic_revision_of_fungicolous_Cladosporium_species_hyphomycetes/links/549d98130cf2fedbc311969d/Morphotaxonomic-revision-of-fungicolous-Cladosporium-species-hyphomycetes.pdf]
  13. Hyde, K.D. & Suyton, K. (2008) The fungal endophyte dilemma. Fungal Diversity 33: 163–173. [https://www.researchgate.net/profile/Kevin-Hyde-3/publication/261401775_The_fungal_endophyte_dilemma/links/57eb437808aeafc4e88a5ea1/The-fungal-endophyte-dilemma.pdf]
  14. Jayasekara, A., Daranagama, A., Kodituwakku, T.D. & Abeywickrama, K., (2022) Morphological and molecular identification of fungi for their association with postharvest fruit rots in some selected citrus species. Journal of Agricultural Sciences – Sri Lanka 17 (1): 79–93. https://doi.org/10.4038/jas.v17i1.9612
  15. Jeewon, R. & Hyde, K.D. (2016) Establishing species boundaries and new taxa among fungi: recommendations to resolve taxonomic ambiguities. Mycosphere 7 (11): 1669–1677. [https://www.mycosphere.org/pdf/Mycosphere_7_11_4.pdf] https://doi.org/10.5943/mycosphere/7/11/4
  16. Jiang, D.H., Lv, M.L., Lu, X.Q. & Xu, H.X. (1993) Citrus Medica L. var. sarcodactylis (Noot.) Swingle black spot is a new disease of bergamot in Zhejiang Province. Acta Phytopathologica Sinica 4: 6. [In Chinese] https://doi.org/10.13926/j.cnki.apps.1993.04.002
  17. Katoh, K., Rozewicki, J. & Yamada, K.D. (2019) MAFFT online service: Multiple sequence alignment, interactive sequence choice and visualization. Briefings in bioinformatics 20: 1160–1166. https://doi.org/10.1093/bib/bbx108
  18. Kim, K.N., Ko, Y.J., Yang, H.M., Ham, Y.M., Roh, S.W., Jeon, Y.J., Ahn, G., Kang, M.C., Yoon, W.J. & Kim, D. (2013) Anti-inflammatory effect of essential oil and its constituents from fingered citron (Citrus medica L. var. sarcodactylis) through blocking JNK, ERK and NF-κB signaling pathways in LPS activated RAW 264.7 cells. Food and Chemical Toxicology 57: 126–131. https://doi.org/10.1016/j.fct.2013.03.017
  19. Li, Y.Q., Yang, J.N., Chen, W.R., Lu, M. & Guo, W.D. (2011) Identification of Penicillium species causing post-harvest diseases of finger citron. Acta Phytopathologica Sinica 41 (5): 534–537. [http://zwblxb.magtech.com.cn/EN/Y2011/V41/I5/534]
  20. Li, W.D., Liao, S.W. & Wei, Y. (2019) Extraction technology of the main active constituents of flavonoid glycosides from fruits of Citrus medica L. var. sarcodactylis Swingle. Lishizhen Medicine and Materia Medica Research 30: 1569–1571. [In Chinese] [https://kns.cnki.net/kcms2/article/abstract?v=YDFulbVifi3fNuq-eqJT6peV24uTdqZeW021MQv-ls81o75wFajmq5o9WD5nXyFMw3--Kx0GKi9Sf7b5EX89r4uy9I9OaVD88kD5RAfqQI7H2btfG8CGS7The7IB4Z2g&uniplatform=NZKPT]
  21. Luo, M., Guo, W., Zhao, M., Manawasinghe, I.S., Guarnaccia, V., Liu, J., Hyde, K.D., Dong, Z. & You, C. (2022) Endophytic diaporthe associated with Morinda officinalis in China. Journal of Fungi 8: 806. https://doi.org/10.3390/jof8080806
  22. Maharachchikumbura, S.S.N., Chen, Y., Ariyawansa, H.A., Hyde, K.D., Haelewaters, D., Perera, R.H., Samarakoon, M.C., Wanasinghe, D.N., Bustamante, D.E., Liu, J.K., Lawrence, D.P., Cheewangkoon, R. & Stadler, M. (2021) Integrative approaches for species delimitation in Ascomycota. Fungal Diversity 109 (1): 155–179. https://doi.org/10.1007/s13225-021-00486-6
  23. Mahdi, A.A., Al-Ansi, W., Ahmed, M.I. & Wang, H.X. (2018) Bioactive compounds and functional benefits of the Foshou fruit: A Review. Journal of Food and Nutrition Research 6 (7): 486–491. https://doi.org/10.12691/jfnr-6-7-10.
  24. Manghwar, H., Naz, S., Gul, S. & Munis, M. (2015) First report of rhizopus oryzae causing fruit rot of Citrus medica L. in Pakistan. Journal of plant pathology 97: 209–220. https://doi.org/10.4454/JPP.V97I1.035
  25. Mei, S., Zhao, H., Liu, X., Mei, Z., Shi, L. & Lu, G. (2006) Development of Bergamot resources and its utility post development. China Seed Industry 10: 68–69. [In Chinese] https://doi.org/10.19462/j.cnki.1671-895x.2006.10.045
  26. Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES science gateway for inference of large phylogenetic trees. Gateway Computing Environments Workshop: 1–8. https://doi.org/10.1109/GCE.2010.5676129
  27. Miura, K. & Kudo, M. (1970) An agar-medium for aquatic hyphomycetes (in Japanese). Transactions of the Mycological Society of Japan 11: 116–118. [https://cir.nii.ac.jp/crid/1572824500310910720]
  28. Peng, C.H., Ker, Y.B., Weng, C.F., Peng, C.C., Huang, C.N., Lin, L.Y. & Peng, R.Y. (2009) Insulin secretagogue bioactivity of finger citron fruit (Citrus medica L. var. sarcodactylis Hort, Rutaceae). Journal of agricultural and food chemistry. 57: 8812–8819. https://doi.org/10.1021/jf902143x
  29. Rambaut, A. & Drummond, A. (2008) FigTree: Tree Figure Drawing Tool, Version 1.2.2. Institute of Evolutionary Biology, University of Edinburgh: Edinburgh, UK. [http://tree.bio.ed.ac.uk/software/figtree]
  30. Rannala, B. & Yang, Z. (1996) Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference. Journal of Molecular Evolution 43: 304–311. https://doi.org/10.1007/BF02338839
  31. Senanayake, I.C., Bhat, J.D., Cheewangkoon, R. & Xie, N. (2020) Bambusicolous Arthrinium Species in Guangdong Province, China. Frontiers in Microbiology 11: 602773. https://doi.org/10.3389/fmicb.2020.602773
  32. Stamatakis, A. & Hoover, P. (2008) Rougemont, J. A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology 57: 758–771. https://doi.org/10.1080/10635150802429642
  33. Stamatakis, A. (2014) RAxML Version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312–1313. https://doi.org/10.1093/bioinformatics/btu033
  34. Swofford, D.L. (2003) PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0. Laboratory of Molecular Systematics Smithsonian Institution. [http://paup. csit. fsu. edu/], 2003.
  35. Swindell, S.R. & Plasterer, T.N. (1997) Seqman. Sequence Data Analysis Guidebook. Methods in Molecular Medicine™, Springer, Totowa, New Jersey, pp. 75–89. [https://link.springer.com/book/10.1385/0896033589?page=2&oscar-books=true] https://doi.org/10.1385/0-89603-358-9:75
  36. Theanphong, O., Songsak, T. & Mingvanish, W. (2008) Chemical composition and antimicrobial activity of the essential oil from Citrus medica L. var. sarcodactylis (Sieber) Swingle leaf. Mahidol University Journal of Pharmaceutical Sciences. 35: 57–61. [https://pharmacy.mahidol.ac.th/journal/_files/2008.57-61.pdf]
  37. Tibpromma, S., Hyde, K.D., Jeewon, R., Maharachchikumbura, S.S.N., Liu, J.K., Bhat, D.J., Jones, E.B.G., McKenzie, E.H.C., Camporesi, E., Bulgakov, T., Doilom, M., Santiago, A.L.C.M.A., Das, K., Manimohan, P., Gibertoni, T.B., Lim, Y.W., Ekanayaka, H.A., Thongbai, B., Lee, H.B., Yang, J.B., Kirk, P.M., Sysouphanthong, P., Singh, S.K., Boonmee, S., Dong, W., Raj, K. N. A., Latha, K.P.D., Phookamsak, R., Phukhamsakda, C., Konta, S., Jayasiri, S.C., Norphanphoun, C., Tennakoon, D.S., Li, J., Dayarathne, M.C., Perera, R.H., Xiao, Y., Wanasinghe, D.N., Senanayake, I.C., Goonasekara, I.D., Silva,N.I.de., Mapook, A., Jayawardena, R.S., Dissanayake, A.J., Manawasinghe, I.S., Chethana, K.W.T., Luo, Z.L., Hapuarachchi, K.K., Baghela,A., Soares, A.M., Vizzini, A., Ottoni, A.M., Armin, M., Dutta, A.K., Souza, C.A.F., Richter, C., Lin, C.G., Chakrabarty, D., Daranagama, D.A. & Diogo, X.L.D.X. (2017) Fungal diversity notes 491–602: Taxonomic and phylogenetic contributions to fungal taxa. Fungal Divers 83: 1–261. https://doi.org/10.1007/s13225-017-0378-0
  38. Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of bacteriology 172: 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
  39. White, T.J., Bruns, T.D., Lee, S.B. & Taylor, J.W. (1989) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: A Guide to Methods and Applications 31: 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
  40. Wu, Z. (2015) Effect of different drying methods on chemical composition and bioactivity of finger citron polysaccharides. International journal of biological macromolecules 76: 218–223. https://doi.org/10.1016/j.ijbiomac.2015.02.043
  41. Wu, Z., Li, H., Yang, Y., Zhan, Y. & Tu, D. (2013) Variation in the components and antioxidant activity of Citrus medica L. var. sarcodactylis essential oils at different stages of maturity. Industrial crops and products 46: 311–316. https://doi.org/10.1016/j.indcrop.2013.02.015
  42. Xu, R., Zhong, F.L. & Wang, S.B. (2017) Herbal textual research on Citrus medica L. var. sarcodactylis Swingle. Journal of Chinese Medicinal Materials 40: 1975–1978. [In Chinese] https://doi.org/10.13863/j.issn1001-4454.2017.08.053
  43. Zhang, G.F., Lin, X.H. & He, H. (2003) The main diseases and integrated control of Citrus Medica L. var. sarcodactylis (Noot.) Swingle. Research and Practiceon Chinese Medicines 5: 9–11. [In Chinese] [https://kns.cnki.net/kns8/Detail?sfield=fn&QueryID=0&CurRec=3&recid=&FileName=JZZY200305002&DbName=CJFD2003&DbCode=CJFD&yx=&pr=&URLID=]
  44. Zhaxybayeva, O. & Gogarten, J.P. (2002) Bootstrap, Bayesian probability and maximum likelihood mapping: Exploring new tools for comparative genome analyses. Genomics 3: 1–15. https://doi.org/10.1186/1471-2164-3-4