Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2024-07-25
Page range: 75-86
Abstract views: 64
PDF downloaded: 90

Molecular phylogeny and morphology reveal a new wood-inhabiting fungal species, Hyphoderma guangdongense (Polyporales, Basidiomycota), from China

College of Forestry, Southwest Forestry University, Kunming 650224, P.R. China
College of Forestry, Southwest Forestry University, Kunming 650224, P.R. China
College of Forestry, Southwest Forestry University, Kunming 650224, P.R. China, Yunnan Academy of Biodiversity, Southwest Forestry University, Kunming 650224, P.R. China
College of Forestry, Southwest Forestry University, Kunming 650224, P.R. China, Yunnan Academy of Biodiversity, Southwest Forestry University, Kunming 650224, P.R. China
Fungi 1 new species Biodiversity Guangdong Province Phylogenetic analysis Taxonomy Wood-inhabiting fungi

Abstract

Hyphoderma is one of the most important representative groups of wood-inhabiting fungi. These fungi secrete various enzymes capable of degrading cellulose, hemicellulose, and lignin into simple inorganic substances. The taxa within the genus cause the white rot of wood, play a key role in the carbon cycle, and are the most efficient wood decomposers in the forest ecosystem. This study proposes a new wood-inhabiting fungal taxon, Hyphoderma guangdongense, based on morphological features and molecular evidence. It is characterized by the white hymenial surface, a monomitic hyphal system having the generative hyphae with clamp connections, the presence of the septate and tubular cystidia, and cylindrical basidiospores (6–10 × 3–5 µm). The phylogenetic tree inferred from a combination of the internal transcribed spacers (ITS) and large subunit (nrLSU) of the nuclear ribosomal DNA (rDNA) sequences revealed that H. guangdongense placed into the genus Hyphoderma, in which it is closely related to a clade comprising two taxa, H. setigerum, and H. floccosum. A full description, illustrations, and results of the new species' phylogenetic analysis are provided.

References

  1. Baltazar, J.M., Da Silveira, R.M.B. & Rajchenberg, M. (2016) Type studies of J. Rick’s corticioid homobasidiomycetes (Agaricomycetes, Basidiomycota) housed in the Herbarium Anchieta (PACA). Phytotaxa 255 (2): 101–132. https://doi.org/10.11646/phytotaxa.255.2.1
  2. Bernicchia, A. & Gorjón, S.P. (2010) Fungi Europaei 12: Corticiaceae s.l. Edizioni Candusso, Lomazzo, pp. 1–1007.
  3. Dai, Y.C. (2011) A revised checklist of corticioid and hydnoid fungi in China for 2010. Mycoscience 52: 69–79. https://doi.org/10.1007/S10267-010-0068-1
  4. Dai, Y.C., Cui, B.K., Si, J., He, S.H., Hyde, K.D., Yuan, H.S. & Liu, X.Y. (2015) Dynamics of the worldwide number of fungi with emphasis on fungal diversity in China. Mycological Progress 14: 1–9. https://doi.org/10.1007/s11557-015-1084-5
  5. Dai, Y.C. (2012) Polypore diversity in China with an annotated checklist of Chinese polypores. Mycoscience 53: 49–80. https://doi.org/10.1007/s10267-011-0134-3
  6. Dai, Y.C., Yang, Z.L., Cui, B.K., Wu, G., Yuan, H.S., Zhou, L.W., He, S.H., Ge, Z.W., Wu, F., Wei, Y.L., Yuan, Y. & Si, J. (2021) Diversity and systematics of the important macrofungi in Chinese forests. Mycosystema 40: 770–805. https://doi.org/10.13346/j.mycosystema.210036
  7. Deng, Y.L. & Zhao, C.L. (2023) The molecular phylogeny and morphology revealed a new wood-rotting fungus Vararia yunnanensis (Peniophoraceae, Russulales) in Yunnan Province, China. Phytotaxa 583 (1): 39–49. https://doi.org/10.11646/phytotaxa.583.1.4
  8. Donk, M.A. (1957) Notes on resupinate Hymenomycetes IV. Fungus 27: 1–29.
  9. Duan, Z.Y., Guan, Q.X., Luo, K.Y. & Zhao, C.L. (2023) Morphological and molecular identification of three new resupinate species of Hyphoderma (Hyphodermataceae, Agaricomycetes) from East Asia. Phytotaxa 599 (1): 1–19. https://doi.org/10.11646/phytotaxa.599.1.1.
  10. Felsenstein, J. (1985) Confidence intervals on phylogenetics: an approach using bootstrap. Evolution 39: 783–791. https://doi.org/10.1111/j.1558-5646.1985.tb00420.x
  11. Floudas, D., Binder, M., Riley, R., Barry, K., Blanchette, R.A., Henrissat, B., Martínez, A.T., Otillar, R., Spatafora, J.W., Yadav, J.S., Aerts, A., Benoit, I., Boyd, A., Carlson, A., Copeland, A., Coutinho, P.M., de Vries, R.P., Ferreira, P., Findley, K., Foster, B., Gaskell, J., Glotzer, D., Górecki, P., Heitman, J., Hesse, C., Hori, C., Igarashi, K., Jurgen, J.A., Kallen, N., Kersten, P., Kohler, A., Kües, U., Kumar, T.K.A., Kuo, A., LaButti, K., Larrondo, L.F., Lindquist, E., Ling, A., Lombard, V., Lucas, S., Lundell, T., Martin, R., McLaughlin, D.J., Morgenstern, I., Morin, E., Murat, C., Nagy, L.G., Nolan, M., Ohm, R.A., Patyshakuliyeva, A., Rokas, A., Ruiz Dueñas, F.J., Sabat, G., Salamov, A., Samejima, M., Schmutz, J., Slot, J.C., John, F.St., Stenlid, J., Sun, H., Sun, S., Syed, K., Tsang, A., Wiebenga, A., Young, D., Pisabarro, A., Eastwood, D.C, Martin, F., Cullen, D., Grigoriev, I.V. & Hibbett, D.S. (2012) The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 336: 1715–1719. https://doi.org/10.1126/science.1221748
  12. Floudas, D. & Hibbett, D.S. (2015) Revisiting the taxonomy of Phanerochaete (Polyporales, Basidiomycota) using a four gene dataset and extensive ITS sampling. Fungal Biology 119: 679–719. https://doi.org/10.1016/j.funbio.2015.04.003.
  13. Gilbertson, R.L. & Ryvarden, L. (1987) North American Polypores 1-2, Fungiflora: Oslo, Norway, 433 pp.
  14. Guan, Q.X. & Zhao, C.L. (2021a) Taxonomy and phylogeny of the wood-inhabiting fungal genus Hyphoderma with descriptions of three new species from East Asia. Journal of Fungi 7: 308. https://doi.org/10.3390/jof7040308.
  15. Guan, Q.X. & Zhao, C.L. (2021b) Two new corticioid species: Hyphoderma sinense and H. floccosum spp. nov. (Hyphodermataceae, Polyporales) from southern China. Mycosystema 40: 447–461. https://doi.org/10.13346/j.mycosystema.200382.
  16. Guan, Q.X., Li, Y.F. & Zhao, C.L. (2021) Morphological and phylogenetic evidence for recognition of two new species of Hyphoderma (Basidiomycota) from southern China, with a key to all Chinese Hyphoderma. MycoKeys 83: 145. https://doi.org/10.3897/mycokeys.83.69909
  17. Gu, J.Y. & Zhao, C.L. (2022) Ramaricium yunnanense sp. nov. (Gomphaceae, Gomphales) from China. Phytotaxa 573 (1): 123–130. https://doi.org/10.11646/phytotaxa.573.1.8
  18. Hu, Y., Karunarathna, S.C., Li, H., Galappaththi, M.C., Zhao, C.L., Kakumyan, P. & Mortimer, P.E. (2022) The impact of drying temperature on basidiospore size. Diversity 14 (4): 239.
  19. Hussain, S., Nisar, M. & Sher, H. (2024) Taxonomic study and diversity of Postia s. lat. in Swat, Pakistan: addition of five brown rot Polypores to the country. Archives of Microbiology 206 (2): 1–18. https://doi.org/10.1007/s00203-023-03795-3
  20. James, T.Y., Stajich, J.E., Hittinger, C.T. & Rokas, A. (2020) Toward a fully resolved fungal tree of life. Annual Review of Microbiology 74: 291–313. https://doi.org/10.1146/annurev-micro-022020-051835
  21. Justo, A., Miettinen, O., Floudas, D., Ortiz-Santana, B., Sjökvist, E., Lindner, D., Nakasone, K., Niemelä, T., Larsson, K.H., Ryvarden, L. & Hibbett, D.S. (2017) A revised family-level classification of the Polyporales (Basidiomycota). Fungal Biology 121: 798–824. https://doi.org/10.1016/j.funbio.2017.05.010
  22. Katoh, K., Rozewicki, J. & Yamada, K.D. (2019) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20: 1160–1166. https://doi.org/10.1093/bib/bbx108
  23. Kirk, P.M., Cannon, P.F., Minger, D.W. & Stalpers, J.A. (2008) Dictionary of the Fungi. (10thedn). Wallingford, UK, 771 pp.
  24. Larsson, A. (2014) AliView: a fast and lightweight alignment viewer and editor for large data sets. Bioinformatics 30: 3276–3278. https://doi.org/10.1093/bioinformatics/btu531
  25. Larsson, K.H. (2007) Re-thinking the classification of corticioid fungi. Mycological Research 111 (9): 1040–1063. https://doi.org/10.1016/j.mycres.2007.08.001.
  26. Luo, K.Y., Chen, Z.Y. & Zhao, C.L. (2022) Phylogenetic and taxonomic analyses of three new wood-inhabiting fungi of Xylodon (Basidiomycota) in a forest ecological system. Journal of Fungi 8 (4): 405. https://doi.org/10.3390/jof8040405
  27. Luo, K.Y. & Zhao, C.L. (2022) Morphology and multigene phylogeny reveal a new order and a new species of wood-inhabiting basidiomycete fungi (Agaricomycetes). Frontiers in Microbiology 13: 970731. https://doi.org/10.3389/fmicb.2022.970731
  28. Luo, K.Y. & Zhao, C.L. (2023) A molecular systematics and taxonomy research on Trechispora (Hydnodontaceae, Trechisporales): concentrating on three new Trechispora species from East Asia. Journal of Fungi 8: 1020. https://doi.org/10.3390/jof8101020
  29. Mao, W.L., Wu, Y.D., Liu, H.G., Yuan, Y. & Dai, Y.C. (2023) A contribution to Porogramme (Polyporaceae, Agaricomycetes) and related genera. IMA fungus 14: 5. https://doi.org/10.1186/s43008-023-00110-z
  30. Martín, M.P., Zhang, L.F., Fernández-López, J., Dueñas, M., Rodríguez-Armas, J.L., Beltrán-Tejera, E. & Tellería, M.T. (2018) Hyphoderma paramacaronesicum sp. nov. (Meruliaceae, Polyporales, Basidiomycota), a cryptic lineage to H. macaronesicum. Fungal Systematics and Evolution 2 (1): 57–68. https://doi.org/10.3114/fuse.2018.02.05.
  31. Ma, X. & Zhao, C.L. (2021) Xylodon bambusinus and X. xinpingensis spp. nov. (Hymenochaetales) from southern China. Phytotaxa 511 (3): 231–247. https://doi.org/10.11646/phytotaxa.511.3.3
  32. Ma, X., Huang, R.X., Zhang, Y. & Zhao, C.L. (2021) Hyphoderma fissuratum and H. mopanshanense spp. nov. (Polyporales) from southern China. Mycoscience 62 (1): 36–41. https://doi.org/10.47371/mycosci.2020.08.004
  33. Miller, M.A., Pfeiffer, W. & Schwartz, T. (2012) The CIPRES science gateway: enabling high–impact science for phylogenetics researchers with limited resources. Association for Computing Machinery 39: 1–8. https://doi.org/10.1145/2335755.2335836
  34. Nakasone, K.K. (2008) Type studies of corticioid Hymenomycetes described by Bresadola. Cryptogamie Mycologie 29 (3): 231.
  35. Nilsson, R.H., Hallenberg, N., Nordén, B., Maekawa, N. & Wu S.H. (2003) Phylogeography of Hyphoderma setigerum (Basidiomycota) in the northern hemisphere. Mycological Research 107 (6): 645–652. https://doi.org/10.1017/S0953756203007925.
  36. Núñez, M. & Ryvarden, L. (2001) East Asian polypores 2. polyporaceae s. lato. Synopsis Fungorum 14: 165–522.
  37. Nylander, J.A.A. (2004) MrModeltest v2. Program Distributed by the Author, Evolutionary Biology Centre, Uppsala University: Uppsala, Sweden.
  38. Petersen, J.H. (1996) Farvekort. The Danish Mycological Society’s Colour-Chart. Foreningen til Svampekundskabens Fremme: Greve, Germany, 6 pp.
  39. Rokas, A., Wisecaver, J.H. & Lind, A.L. (2018) The birth, evolution and death of metabolic gene clusters in fungi. Nature Reviews Microbiology 16 (12): 731–744. https://doi.org/10.1038/s41579-018-0075-3
  40. Ronquist, F., Teslenko, M., Mark, P.V.D., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) Mrbayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539–542. https://doi.org/10.1093/sysbio/sys029
  41. Ryvarden, L. & Melo, I. (2014) Poroid Fungi of Europe, Volume 31. Synopsis Fungorum, Fungiflora, Oslo, Norway, 455 pp.
  42. Swofford, D.L. (2002) PAUP*: Phylogenetic analysis using parsimony (*and Other Methods), Version 4.0b10, Sinauer Associates: Sunderland, MA, USA.
  43. Tedersoo, L., Bahram, M., Põlme, S., Kõljalg, U., Yorou, N.S., Wijesundera, R., Ruiz, L.V., Vasco-Palacios, A.M., Thu, P.Q., Suija, A., Smith, M.E., Sharp, C., Saluveer, E., Saitta, A., Rosas, M., Riit, T., Ratkowsky, D., Pritsch, K., Põldmaa, K., Piepenbring, M., Phosri, C., Peterson, M., Parts, K., Pärtel, K., Otsing, E., Nouhra, E., Njouonkou, A.L., Nilsson, R.H., Morgado, L.N., Mayor, J., May, T.W., Majuakim, L., Lodge, D.J., Lee, S.S., Larsson, K.H., Kohout, P., Hosaka, K., Hiiesalu, I., Henkel, T.W., Harend, H., Guo, L.D., Greslebin, A., Grelet, G., Geml, J., Gates, G., Dunstan, W., Dunk, C., Drenkhan, R., Dearnaley, J., Kesel, A.D., Dang, T., Chen, X., Buegger, F., Brearley, F.Q., Bonito, G., Anslan, S., Abell, S. & Abarenkov K. (2014) Global diversity and geography of soil fungi. Science 346: 1256688. https://doi.org/10.1126/science.1256688
  44. Tellería, M.T., Dueñas, M., Beltrán-Tejera, E., Rodríguez-Armas, J.L. & Martín, M.P. (2012) A new species of Hyphoderma (Meruliaceae, Polyporales) and its discrimination from closely related taxa. Mycologia 104: 1121–1132. https://doi.org/10.3852/11-344.
  45. Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
  46. Vu, D., Groenewald, M., de Vries, M., Gehrmann, T., Stielow, B., Eberhardt, U., Al-Hatmi, A., Groenewald, J.Z., Cardinali, G., Houbraken, J., Boekhout, T., Crous, P.W., Robert, V. & Verkley, G.J.M. (2019) Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. Studies in Mycology 92: 135–154. https://doi.org/10.1016/j.simyco.2018.05.001
  47. Wallroth, C.F.W. (1833) Flora Cryptogamica Germaniae Volume 2. Nabu Press, Nürnberg, Germany, pp. 1–923.
  48. Wang, Y.R., Wu, Y.D., Vlasák, J., Yuan, Y. & Dai, Y.C. (2021) Phylogenetic analysis demonstrating four new species in Megasporoporia sensu lato (Polyporales, Basidiomycota). Mycosphere 12 (1): 1012–1037. https://doi.org/10.5943/mycosphere/12/1/11
  49. White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR protocols: A guide to methods and applications. Academic Press, San Diego, pp. 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
  50. Wijayawardene, N.N., Hyde, K.D., Dai, D.Q., Sánchez-García, M., Goto, B.T., Saxena, R.K., Erdoğdu, M., Selçuk, F., Rajeshkumar, K.C., Aptroot, A., Błaszkowski, J., Boonyuen, N., da Silva, G.A., de Souza, F.A., Dong, W., Ertz, D., Haelewaters, D., Jones, E.B.G., Karunarathna, S.C., Kirk, P.M., Kukwa, M., Kumla, J., Leontyev, D.V., Lumbsch, H.T., Maharachchikumbura, S.S.N., Marguno, F., Martínez-Rodríguez, P., Mešić, A., Monteiro, J.S., Oehl, F., Pawłowska, J., Pem, D., Pfliegler, W.P., Phillips, A.J.L., Pošta, A., He, M.Q., Li, J.X., Raza, M., Sruthi, O.P., Suetrong, S., Suwannarach, N., Tedersoo, L., Thiyagaraja, V., Tibpromma, S., Tkalčec, Z., Tokarev, Y.S., Wanasinghe, D.N., Wijesundara, D.S.A., Wimalaseana, S.D.M.K., Madrid, H., Zhang, G.Q., Gao, Y., Sánchez-Castro, I., Tang, L.Z., Stadler, M., Yurkov, A. & Thines, M. (2022) Outline of Fungi and fungus like taxa-2021. Mycosphere 13: 53–453. https://doi.org/10.5943/mycosphere/13/1/2.
  51. Wu, F., Man, X.W., Tohtirjap, A. & Dai, Y.C. (2022) A comparison of polypore funga and species composition in forest ecosystems of China, North America, and Europe. Forest Ecosystems 9: 100051. https://doi.org/10.1016/j.fecs.2022.100051
  52. Wu, F., Yuan, H.S., Zhou, L.W., Yuan, Y., Cui, B.K. & Dai, Y.C. (2020) Polypore diversity in South China. Mycosystema 39: 653–682. https://doi.org/10.13346/j.mycosystema.200087
  53. Wu, S.H. (1997) New species of Hyphoderma from Taiwan. Mycologia 89: 132–140. https://doi.org/10.1080/00275514.1997.12026764
  54. Wu, S.H., Nilsson, H.R., Chen, C.T., Yu, S.Y. & Hallenberg, N. (2010) The white-rotting genus Phanerochaete is polyphyletic and distributed throughout the phleboid clade of the Polyporales (Basidiomycota). Fungal Diversity 42: 107–118. https://doi.org/10.1007/s13225-010-0031-7
  55. Yang, Y., Li, R., Jiang, Q.Q., Zhou, H.M., Muhammad, A., Wang, H.J. & Zhao, C.L. (2024) Phylogenetic and Taxonomic Analyses Reveal Three New Wood-Inhabiting Fungi (Polyporales, Basidiomycota) in China. Journal of Fungi 10 (1): 55. https://doi.org/10.3390/jof10010055
  56. Yang, Y., Jiang, Q.Q., Li, Q., Yang, J.W., Cha, L., Cheng, L.J., Yang S.Q., Zhao C.L. & Zhou, H.M. (2023) Molecular systematics and taxonomic analyses of three new wood-inhabiting fungi of Hyphoderma (Hyphodermataceae, Basidiomycota). Journal of Fungi 9 (11): 1044. https://doi.org/10.3390/jof9111044
  57. Yurchenko, E. & Wu, S.H. (2014a) Hyphoderma pinicola sp. nov. of H. setigerum complex (Basidiomycota) from Yunnan, China. Botanical Studies 55 (1): 1–8. https://doi.org/10.1186/s40529-014-0071-5
  58. Yurchenko, E. & Wu, S.H. (2014b) Hyphoderma formosanum sp. nov. (Meruliaceae, Basidiomycota) from Taiwan. Sydowia 66: 19–23.
  59. Yurchenko, E. & Wu, S.H. (2015) Hyphoderma moniliforme and H. nemorale (Basidiomycota) newly recorded from China. Mycosphere 6: 113–121. https://doi.org/10.5943/mycosphere/6/1/11
  60. Zhao, C.L., Qu, M.H., Huang, R.X. & Karunarathna, S.C. (2023) Multi-gene phylogeny and taxonomy of the wood-rotting fungal genus Phlebia sensu lato (Polyporales, Basidiomycota). Journal of Fungi 9: 320. https://doi.org/10.3390/jof9030320
  61. Zhao, C.L. & Wu, Z.Q. (2017) Ceriporiopsis kunmingensis sp. nov. (Polyporales, Basidiomycota) evidenced by morphological characters and phylogenetic analysis. Mycological Progress 16: 93–100. https://doi.org/10.1007/s11557-016-1259-8
  62. Zong, T.K., Wu, J.R. & Zhao, C.L. (2021) Three new Xenasmatella (Polyporales, Basidiomycota) species from China. Phytotaxa 489 (2): 111–120. https://doi.org/10.11646/phytotaxa.489.2.1