Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2024-06-18
Page range: 175-187
Abstract views: 66
PDF downloaded: 15

Colletotrichum paridis sp. nov., a novel endophytic species on Paris polyphylla var. chinensis

State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems; Center for Grassland Microbiome; Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture and Rural Affairs; Engineering Research Center of Grassland Industry, Ministry of Education; Gansu Tech Innovation Center of Western China Grassland Industry; College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China.
State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems; Center for Grassland Microbiome; Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture and Rural Affairs; Engineering Research Center of Grassland Industry, Ministry of Education; Gansu Tech Innovation Center of Western China Grassland Industry; College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China.
State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems; Center for Grassland Microbiome; Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture and Rural Affairs; Engineering Research Center of Grassland Industry, Ministry of Education; Gansu Tech Innovation Center of Western China Grassland Industry; College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China.
State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems; Center for Grassland Microbiome; Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture and Rural Affairs; Engineering Research Center of Grassland Industry, Ministry of Education; Gansu Tech Innovation Center of Western China Grassland Industry; College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China.
Colletotrichum paridis Paris polyphylla phylogeny taxonomy Fungi

Abstract

The genus Paris is a crucial medicinal herb, widely cultivated in East Asia and Europe. In 2017 a novel Colletotrichum species was isolated from leaf lesions with grey mould of Paris polyphylla var. chinensis in Sichuan Province of China. Through single-spore technique, four isolates were obtained for characterization. Phylogeny inferred from multi-locus sequences of ITS, gapdh, act, tub2, chs-1, and his3, showed that these isolates represented a novel sister species to C. jinshuiense within the C. dematium complex. Morphologically, this new species produces larger conidia than those of C. jinshuiense and cultures on PDA show a noticeable pink ring. Tests showed that this species had no pathogenicity to the host plants. Based on phylogenetic, morphological, and pathogenicity data, we propose the name C. paridis sp. nov. for this new endophyte from P. polyphylla in China.

References

  1. Buyck, B., Duhem, B., Das, K., Jayawardena, R.S., Niveiro, N., Pereira, O.L., Bulgakov, T.S., Castaneda-ruiz, R.F., Hembrom, M.E., Hyde, K.D., Lewis, D.P., Michlig, A., Nuytinck, J., Parihar, A., Popoff, O.F., Ramirez, N.A., Silva, M.D., Verma, R.K. & Hofstetter, V. (2017) Fungal biodiversity profiles 21–30. Cryptogamie Mycologie 38: 101–146. https://doi.org/10.7872/crym/v38.iss1.2017.101
  2. Cai, L., Hyde, K.D., Taylor, P.W.J., Weir, B.S., Waller, J.M., Abang, M.M., Zhang, J.Z., Yang, Y.L., Phoulivong, S., Liu, Z.Y., Prihastuti, H., Shivas, R.G., McKenzie, E.H.C. & Johnston, P.R. (2009) A polyphasic approach for studying Colletotrichum. Fungal Diversity 39: 183–204.
  3. Cannon, P.F., Damm, U., Johnston, P.R. & Weir, B.S. (2012) Colletotrichum–current status and future directions. Studies in Mycology 73: 181–213. https://doi.org/10.3114/sim0014
  4. Carbone, I. & Kohn, L.M. (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553–556. https://doi.org/10.2307/3761358
  5. Crous, P.W., Groenewald, J.Z., Risède, J.M., Simoneau, P. & Hywel-Jones, N.L. (2004) Calonectria species and their Cylindrocladium anamorphs: species with sphaeropedunculate vesicles. Studies in Mycology 50: 415–430. https://doi.org/10.3114/sim.55.1.213
  6. Cunningham, A.B., Brinckmann, J.A., Bi, Y.F., Pei, S.J., Schippmann, U. & Lou, P. (2018) Paris in the spring: a review of the trade, conservation and opportunities in the shift from wild harvest to cultivation of Paris polyphylla (Trilliaceae). Journal of Ethnopharmacology 222: 208–216. https://doi.org/10.1016/j.jep.2018.04.048
  7. Damm, U., Woudenberg, J.H.C., Cannon, P.F. & Crous, P.W. (2009) Colletotrichum species with curved conidia from herbaceous hosts. Fungal Diversity 39: 45–87.
  8. Edler, D., Klein, J., Antonelli, A. & Silvestro, D. (2021) raxmlGUI 2.0: a graphical interface and toolkit for phylogenetic analyses using RAxML. Methods in Ecology and Evolution 12: 373–377. https://doi.org/10.1111/2041-210X.13512
  9. Farr, D.F., Rossman, A.Y. & Castlebury, L.A. (2021) United States National Fungus Collections Fungus-Host Dataset. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1524414
  10. Fu, R.T., Lu, D.H., Ke, Y.X., Wang, J., Chen, C. & Gong, X.S. (2018) First report of leaf spot caused by Alternaria alternata on Paris polyphylla var. chinensis in China. Plant Disease 102: 1032. https://doi.org/10.1094/PDIS-11-17-1714-PDN
  11. Fu, M., Crous, P.W., Bai, Q., Zhang, P.F., Xiang, J., Guo, Y.S., Zhao, F.F., Yang, M.M., Hong, N., Xu, W.X. & Wang, G.P. (2019a) Colletotrichum species associated with anthracnose of Pyrus spp. in China. Persoonia 42: 1–35. https://doi.org/10.3767/persoonia.2019.42.01
  12. Fu, R., Chen, C., Wang, J., Ke, Y. & Lu, D. (2019b) Identification of Alternaria tenuissima causing brown leaf spot on Paris polyphylla var. chinensis in China. Journal of Phytopathology 167: 440–444. https://doi.org/10.1111/jph.12815
  13. Fu, R., Wang, J., Chen, C., Ke, Y., Chen, X. & Lu, D. (2021) Fungal disease survey and pathogen identification on Paris polyphylla var. chinensis in Sichuan. Molecular Plant Breeding 19: 209–217. https://doi.org/10.13271/j.mpb.019.000209
  14. Glass, N.L. & Donaldson, G.C. (1995) Development of primer sets designed for use with PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology 61: 1323–1330. https://doi.org/10.1128/aem.61.4.1323-1330.1995
  15. Guerber, J.C., Liu, B., Correll, J.C., Peter, R.J. (2003) Characterization of diversity in Colletotrichum acutatum sensu lato by sequence analysis of two gene introns, mtDNA and intron RFLPs, and mating compatibility. Mycologia 95: 872–895. https://doi.org/10.1080/15572536.2004.11833047
  16. Hyde, K.D., Hongsanan, S., Jeewon, R., Bhat, D.J., McKenzie, E.H.C., Jones, E.B.G., Phookamsak, R., Ariyawansa, H.A., Boonmee, S., Zhao, Q., Abdel-Aziz, F.A., Abdel-Wahab, M.A., Banmai, S., Chomnunti, P., Cui, B.K., Daranagama, D.A., Das, K., Dayarathne, M.C., Silva, N.I., Dissanayake, A.J., Doilom, M., Ekanayaka, A.H., Gibertoni, T.B., Go ́es-Neto, A., Huang, S.K., Jayasiri, S.C., Jayawardena, R.S., Konta, S., Lee, H.B., Li, W.J., Lin, C.G., Liu, J.K., Lu, Y.Z., Luo, Z.L., Manawasinghe, I.S., Manimohan, P., Mapook, A., Niskanen, T., Norphanphoun, C., Papizadeh, M., Perera, R.H., Phukhamsakda, C., Richter, C., Santiago, A.L.C.M., Drechsler-Santos, E.R., Senanayake, I.C. & Tanaka, K. (2016) Fungal diversity notes 367–490: taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity 80: 1–270. https://doi.org/10.1007/s13225-016-0373-x
  17. Hyde, K.D., Norphanphoun, C., Maharachchikumbura, S.S.N., Bhat, D.J., Jones, E.B.G., Bundhun, D., Chen, Y.J., Bao, D.F., Boonmee, S., Calabon, M.S., Chaiwan, N., Chethana, K.W.T., Dai, D.Q., Dayarathne, M.C., Devadatha, B., Dissanayake, A.J., Dissanayake, L.S., Doilom, M., Dong, W., Fan, X.L., Goonasekara, I.D., Hongsanan, S., Huang, S.K., Jayawardena, R.S., Jeewon, R., Karunarathna, A., Konta, S., Kumar, V., Lin, C.G., Liu, J.K., Liu, N.G., Luangsa-ard, J., Lumyong, S., Luo, Z.L., Marasinghe, D.S., McKenzie, E.H.C., Niego, A.G.T., Niranjan, M., Perera, R.H., Phukhamsakda, C., Rathnayaka, A.R., Samarakoon, M.C., Samarakoon, S.M.B.C., Sarma, V.V., Senanayake, I.C., Shang, Q.J., Stadler, M., Tibpromma, S., Wanasinghe, D.N., Wei, D.P., Wijayawardene, N.N., Xiao, Y.P., Yang, J., Zeng, X.Y., Zhang, S.N. & Xiang, M.M. (2020) Refined families of Sordariomycetes. Mycosphere 11: 305–1059. https://doi.org/10.5943/mycosphere/11/1/7
  18. Jayawardena, R.S., Camporesi, E., Elgorban, A.M., Bahkali, A.H., Yan, J. & Hyde, K.D. (2017) A new species of Colletotrichum from Sonchus sp. in Italy. Phytotaxa 314: 55–63. https://doi.org/10.11646/phytotaxa.314.1.3
  19. Katoh, K. & Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772–780. https://doi.org/10.1093/molbev/mst010
  20. Lee, S.Y. & Jung, H.Y. (2018) Colletotrichum kakivorum sp. nov., a new leaf spot pathogen of persimmon in Korea. Mycological Progress 17: 1113–1121. https://doi.org/10.1007/s11557-018-1424-3
  21. Li, J., Zhao, J., Xu, L., Zhou, L., Li, X. & Wang, J. (2008) Endophytic fungi from rhizomes of Paris polyphylla var. yunnanensis. World Journal of Microbiology and Biotechnology 24: 733–737. https://doi.org/10.1007/s11274-007-9531-3
  22. Li, G.J., Hyde, K.D., Zhao, R.L., Hongsanan, S., Abdel-Aziz, F.A., Abdel-Wahab, M.A., Alvarado, P., Alves-Silva, G., Ammirati, J.F., Ariyawansa, H.A., Baghela, A., Bahkali, A.H., Beug, M., Bhat, D.J., Bojantchev, D., Boonpratuang, T., Bulgakov, T.S., Camporesi, E., Boro, M.C., Ceska, O., Chakraborty, D., Chen, J.J., Chethana, K.W.T., Chomnunti, P., Consiglio, G., Cui, B.K., Dai, D.Q., Dai, Y.C., Daranagama, D.A., Das, L., Dayarathne, M.C., Crop, E.D., Oliveira, R.J.V.D., Souza, C.A.F., Souza, J.I., Dentinger, B.Y.M., Dissanayake, A.J., Doilom, M., Drechsler-Santos, E.R., Ghobad-Nejhad, M., Gilmore, S.P. & Góes-Neto, A. (2016) Fungal diversity notes 253–366: taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity 78: 1–237. https://doi.org/10.1007/s13225-016-0366-9
  23. Liu, F., Ma, Z.Y., Hou, L.W., Diao, Y.Z., Wu, W.P., Damm, U., Song, S. & Cai, L. (2022) Updating species diversity of Colletotrichum, with a phylogenomic overview. Studies in Mycology 101: 1–56. https://doi.org/10.3114/sim.2022.101.01
  24. Mejía, L.C., Rojas, E.I., Maynard, Z., Van Bael, S., Arnold, A.E., Hebbar, P., Samuels, G.J., Robbins, N. & Herre, E.A. (2008) Endophytic fungi as biocontrol agents of Theobroma cacao pathogens. Biological Control 46: 4–14. https://doi.org/10.1016/j.biocontrol.2008.01.012
  25. Mulenko, W., Majewski, T. & Ruszkiewicz-Michalska, M. (2008) A preliminary checklist of micromycetes in Poland. W. Szafer Institute of Botany, Polish Academy of Sciences 9: 752.
  26. Nylander, J.A.A. (2004) MrModeltest 2.0. Program distributed by author. Evolutionary Biology Centre, Uppsala University.
  27. O’Donnell, K. & Cigelnik, E. (1997) Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Molecular Phylogenetics Evolution 7: 103–116. https://doi.org/10.1006/mpev.1996.0376
  28. Ronquist, F., Teslenko, M., Mark, P., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes v. 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539–542. https://doi.org/10.1093/sysbio/sys029
  29. Shah, S.A., Mazumder, P.B. & Choudhury, M.D. (2012) Medicinal properties of Paris polyphylla Smith: a review. Journal of Herbal Medicine 6: 27–33.
  30. Su, J.Y., Tang, J.Y., Yang, J.H., Dong, J.H., Ji, P.Z., Zhang, L. & Chai, X. (2023) First report of root rot on Paris polyphylla var. yunnanensis caused by Fusarium solani in Yunnan, China. Plant Disease 107: 11. https://doi.org/10.1094/PDIS–06-23-1217-PDN
  31. Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30: 2725–2729. https://doi.org/10.1093/molbev/mst197
  32. Tang, T., Zhang, Y., Wang, F., Mao, T., Guo, J., Guo, X., Duan, Y. & You, J. (2022) Paenibacillus terrae PY8 controls Botrytis cinerea and modifies the endophytic microbial community of the medicinal plant, Paris polyphylla. Biological Control 169: 104888. https://doi.org/10.1016/j.biocontrol.2022.104888
  33. Tao, G., Liu, Z.Y., Liu, F., Gao, Y.H. & Cai, L. (2013) Endophytic Colletotrichum species from Bletilla ochracea (Orchidaceae), with descriptions of seven new speices. Fungal Diversity 61: 139–164. https://doi.org/10.1007/s13225-013-0254-5
  34. Thakur, U., Shashni, S., Thakur, N., Rana, S.K. & Singh, A. (2023) A review on Paris polyphylla Smith: a vulnerable medicinal plant species of a global significance. Journal of Applied Research on Medicinal and Aromatic Plants 33: 100447. https://doi.org/10.1016/j.jarmap.2022.100447
  35. Tibpromma, S., Hyde, K.D., Jeewon, R., Maharachchikumbura, S.S.N., Liu, J.K., Bhat, D.J., Jones, E.B.G., McKenzie, E.H.C., Camporesi, E., Bulgakov, T.S., Doilom, M., Azevedo Santiago, A.L.C.M., Das, K., Manimohan, P., Gibertoni, T.B., Lim, Y.W., Ekanayaka, A.H., Thongbai, B., Lee, H.B., Yang, J.B., Kirk, P.M., Sysouphanthong, P., Singh, S.K., Boonmee, S., Dong, W., Anil Raj, K.N., Latha, K.P.D., Phookamsak, R., Phukhamsakda, C., Konta, S., Jayasiri, S.C., Norphanphoun, C., Tennakoon, D.S., Li, J., Dayarathne, M.C., Perera, R.H., Xiao, Y., Wanasinghe, D.N., Senanayake, I.C., Goonasekara, I.D., Silva, N.I., Mapook, A., Jayawardena, R.S., Dissanayake, A.J., Manawasinghe, I.S., Chethana, K.W.T., Luo, Z.L., Hapuarachchi, K.K., Baghela, A., Soares, A.M., Vizzini, A., Meiras-Ottoni, A., Mesic, A., Dutta, A.M., Souza, C.A.F., Richter, C., Lin, C.G., Chakrabarty, D., Daranagama, D.A., Lima, D.X., Chakraborty, D., Ercole, E., Wu, F., Simonini, G., Vasquez, G., Silva, G.A., Plautz Jr, H.L., Ariyawansa, H.A., Lee, H., Kusan, I., Song, J., Sun, J., Karmakar, J., Hu, K., Semwal, K.C., Thambugala, K.M., Voigt, K., Acharya, K., Rajeshkumar, K.C., Ryvarden, L., Jadan, M., Hosen, M.I., Miksık, M., Samarakoon, M.C., Wijayawardene, N.N., Kim, N.K., Matocec, N., Singh, P.N., Tian, Q., Bhatt, R.P. Oliveira, R.J.V., Tulloss, R.E., Aamir, S., Kaewchai, S., Marathe, S.D., Khan, S., Hongsanan, S., Adhikari, S., Mehmood, T., Bandyopadhyay, T.K., Svetasheva, T.Y., Nguyen, T.T.T., Antonı ́n, V., Li, W.J., Wang, Y., Indoliya, Y., Tkalcec, Z., Elgorban, A.M., Bahkali, A.H., Tang, A.M.C., Su, H.Y., Zhang, H., Promputtha, I., Luangsa-ard, J., Xu, J., Yan, J., Ji-Chuan, K., Stadler, M., Mortimer, P.E., Chomnunti, P., Zhao, Q., Phillips, A.J.L., Nontachaiyapoom, S., Wen, T.C. & Karunarathna, S.C. (2017) Fungal diversity notes 491–602: taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity 83: 1–261. https://doi.org/10.1007/s13225-017-0378-0
  36. Vaidya, G., Lohman, D.J. & Meier, R. (2011) SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information. Cladistics 27: 171–180. https://doi.org/10.1111/j.1096-0031.2010.00329.x
  37. Wang, Z.Q., Yang, X.L., Chang, X.Q., You, J.M., Zhou, Y., Tan, Q., Luo, C.X., Zhang, S. & Lv, L. (2023) First report of anthracnose caused by Colletotrichum jinshuiense on goldthread in China. Plant Disease 107: 964. https://doi.org/10.1094/PDIS-07-22-1528-PDN
  38. White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: a guide to methods and applications 18: 315–322. https://doi.org/10.1016/b978-0-12-372180-8.50042-1
  39. Xue, L.H., Xu, Z.T., Liu, J.Q., Chen, H., White, J.F., Malik, K. & Li, C.J. (2023) Differences in the characteristics and pathogenicity of Pyrenophora species associated with seeds of Italian ryegrass. Plant Disease 107: 758–770. https://doi.org/10.1094/PDIS-08-22-1753-RE
  40. Yang, Y., Liu, Z., Cai, L. & Hyde, K.D. (2012) New species and notes of Colletotrichum on daylilies (Hemerocallis spp.). Tropical Plant Pathology 37: 165–174. https://doi.org/10.1590/S1982-56762012000300001
  41. Yuan, H.S., Lu, X., Dai, Y.C., Hyde, K.D., Kan, Y.H., Kušan, I., He, S.H., Liu, N.G., Sarma, V.V., Zhao, C.L., Cui, B.K., Yousaf, N., Sun, G., Liu, S.Y., Wu, F., Lin, C.G., Dayarathne, M.C., Gibertoni, T.B., Conceição, L.B., Garibay‑Orijel, R., Villegas‑Ríos, M., Salas‑Lizana, R., Wei, T.Z., Qiu, J.Z., Yu, Z.F., Phookamsak, R., Zeng, M., Paloi, S., Bao, D.F., Abeywickrama, P.D., Wei, D.P., Yang, J., Manawasinghe, I.S., Harishchandra, D., Brahmanage, R.S., Silva, N.I., Tennakoon, D.S., Karunarathna, A., Gafforov, Y., Pem, D., Zhang, S.N., Azevedo Santiago, A.L.C.M., Bahkali, A.H., Bhatt, V.K., Brandrud, T.E., Bulgakov, T.S., Camporesi, E., Cao, T., Chen, Y.X., Chen, Y.Y., Devadatha, B., Elgorban, A.M., Fan, L.F., Du, X., Gao, L., Gonçalves, C.M., Gusmão, L.F.P., Huanraluek, N., Jadan, M., Jayawardena, R.S., Khalid, A.N., Langer, E., Lima, D.X., Lima‑Júnior, N.C., Lira, C.R.S., Liu, J.K., Liu, S., Lumyong, S., Luo, Z.L., Matočec, N., Niranjan, M., Oliveira‑Filho, J.R.C., Papp, V., Pérez‑Pazos, E., Phillips, A.J.L., Qiu, P.L., Ren, Y., Castañeda Ruiz, R.F., Semwal, K.C., Soop, K., Souza, C.A.F., Souza‑Motta, C.M., Sun, L.H., Xie, M.L., Yao, Y.J., Zhao, Q. & Zhou, L.W. (2020) Fungal diversity notes 1277–1386: taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity 104: 1–266. https://doi.org/10.1007/s13225-020-00461-7
  42. Zhang, G.Y., Wang, Y.H., Guo, M., Zhang, T.T., Wang, B. & Liu, H.M. (2022) Isolation and identification of a cellulase-producing endophytic fungus in Paris polyphylla var. yunnanensis. Biotechnology Bulletin 38: 95–104. https://doi.org/10.13560/j.cnki.biotech.bull.1985.2021-0266
  43. Zhao, J., Mou, Y., Shan, T., Li, Y., Zhou, L., Wang, M.G. & Wang, J.G. (2010) Antimicrobial metabolites from the endophytic fungus Pichia guilliermondii isolated from Paris polyphylla var. yunnanensis. Molecules 15: 7961–7970. https://doi.org/10.3390/molecules15117961
  44. Zhong, S., Zhang, J. & Zhang, G.Z. (2019) Botrytis polyphyllae: a new Botrytis species causing gray mold on Paris polyphylla. Plant Disease 103: 1721–1727. https://doi.org/10.1094/PDIS-07-18-1284-RE
  45. Zhong, J., Li, C.X., Zhong, S.Y. & Hu, Z. (2020) First report of leaf spot caused by Colletotrichum spaethianum on Paris polyphylla in China. Plant Disease 104: 972. https://doi.org/10.1094/PDIS-09-19-1844-PDN
  46. Zhou, X., Li, M., Rao, B., Chen, Y., Cai, C. & Gao, H. (2020) First report of anthracnose on Paris polyphylla var. chinensis caused by Colletotrichum fructicola in Northern Fujian, China. Plant Disease 104: 2728. https://doi.org/10.1094/PDIS-04-20-0693-PDN