Abstract
Buckwheat (Fagopyrum spp.) is an important agricultural crop in some remote regions of China. In this study, two strains of Colletotrichum were isolated from brown and grey-white spots on the leaves of Fagopyrum gracilipes in Yunnan Province, China. Phylogenetic analyses inferred from combined ITS, act, chs-1, cal, gapdh, apmat, gs, and tub2 sequences revealed that these isolates are a new species, belonging to the C. gloeosporioides species complex and therefore we introduce as Colletotrichum xishanense. Pathogenicity tests indicated that C. xishanense infects not only herbaceous plant but also woody plant. Given the broader host range and stronger pathogenicity, it is time to focus on disease management and resistance breeding.
References
- Cannon, P.F., Damm, U., Johnston, P.R. & Weir, B.S. (2012) Colletotrichum: current status and future directions. Studies in Mycology 73: 181–213. https://doi.org/10.3114/sim0014
- Carbone, I. & Kohn, L.M. (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553–556. https://doi.org/10.1080/00275514.1999.12061051
- Chen, T.X., Wang, T., Gou, Y.D., Wang, L.H. & Li, C.J. (2021) Identification of Colletotrichum liriopes as the causative agent of anthracnose in buckwheat (Fagopyrum esculentum) in china. Plant Disease 11: 105. https://doi.org/10.1094/PDIS-04-21-0689-PDN
- Crouch, J.A., Clarke, B.B., White, J.F. & Hillman, B.I. (2009) Systematic analysis of the falcate-spored graminicolous Colletotrichum and a description of six new species from warm-season grasses. Mycologia 101 (5): 717−732. https://doi.org/10.3852/08-230
- de Silva, D.D., Groenewald, J.Z., Crous, P.W., Ades, P.K., Nasruddin, A., Mongkolporn, O. & Taylor, P.W.J. (2019) Identification, prevalence and pathogenicity of Colletotrichum species causing anthracnose of Capsicum annuum in Asia. IMA fungus 10 (1): 1−32. https://doi.org/10.1186/s43008-019-0001-y
- Dean, R., Van Kan, J.A., Pretorius, Z.A., Hammond-Kosack, K.E., Di Pietro, A., Spanu, P.D., Rudd, J.J., Dickman, M., Kahmann, R., Ellis, J. & Foster, G.D. (2012) The Top 10 fungal pathogens in molecular plant pathology. Molecular plant pathology 13: 414–430. https://doi.org/10.1111/j.1364-3703.2012.2011.00783.x
- Ding, M.Q., Wu, Y.M. & Wei, L. (2018) Progress of research on buckwheat forage and its application in the livestock and poultry industries. Pratacultural Science 35: 176–185.
- Farris, J.S., Källersjö, M., Kluge, A.G. & Bult, C. (1994) Testing significance of incongruence. Cladistics 10: 315–319. https://doi.org/10.1111/j.1096-0031.1994.tb00181.x
- Glass, N.L. & Donaldson, G.C. (1995) Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology 61: 1323–1330. https://doi.org/10.1128/aem.61.4.1323-1330.1995
- Huang, Z.H., Zou, J.W. & Zhou, W.J. (2021) Bioactivity of leaf extract of Cinnamomum camphora against plant pathogens. Forestry Prospect and Design 41: 29–32. [in Chinese]
- Huelsenbeck, J.P., Hillis, D.M. & Jones, R. (1996) Parametric bootstrapping in molecular phylogenetics: applications and performance. In Ferraris, J.D. & Palumbi, S.R. (Eds.) Molecular zoology: advances, strategies, and protocols. Wiley-Liss, pp. 19–45.
- Hyde, K.D., Norphanphoun, C., Maharachchikumbura, S.S.N., Bhat, D.J., Jones, E.B.G., Bundhun, D., Chen, Y.J., Bao, D.F., Boonmee, S., Calabon, M.S., Chaiwan, N., Chethana, K.W.T., Dai, D.Q., Dayarathne, M.C., Devadatha, B., Dissanayake, A.J., Dissanayake, L.S., Doilom, M., Dong, W., Fan, X.L., Goonasekara, I.D., Hongsanan, S., Huang, S.K., Jayawardena, R.S., Jeewon, R., Karunarathna, A., Konta, S., Kumar, V, Lin, C.G., Liu, J.K., Liu, N.G., Luangsaard, J., Lumyong, S., Luo, Z.L., Marasinghe, D.S., McKenzie, E.H.C., Niego, A.G.T., Niranjan, M., Perera, R.H., Phukhamsakda, C., Rathnayaka, A.R., Samarakoon, M.C., Samarakoon, S.M.B.C., Sarma, V.V., Senanayake, I.C., Shang, Q.J., Stadler, M., Tibpromma, S., Wanasinghe, D.N., Wei, D.P., Wijayawardene, N.N., Xiao, Y.P., Yang, J., Zeng, X.Y., Zhang, S.N. & Xiang, M.M. (2020) Refined families of Sordariomycetes. Mycosphere 11: 305–1059. https://doi.org/10.5943/mycosphere/11/1/7
- Iftikhar, S., Asad, S., Sultan, A., Munir, A. & Ahmad, I. (2008) Occurrence of Colletotrichum graminicola on wheat in Pakistan. Archives of Phytopathology and Plant Protection 41: 4. https://doi.org/10.1080/03235400600759487
- Jayawardena, R.S., Hyde, K.D., de Farias, A.R.G., Bhunjun, C.S., Ferdinandez, H.S., Manamgoda, D.S., Udayanga, D., Herath, I.S., Thambugala, K.M., Manawasinghe, I.S., Gajanayake, A.J., Samarakoon, B.C., Bundhun, D., Gomdola, D., Huanraluek, N., Sun, Y.R., Tang, X., Promputtha, I. & Thines, M. (2021) What is a species in fungal plant pathogens? Fungal Diversity 109 (1): 239–266. https://doi.org/10.1007/s13225-021-00484-8
- Lin, Q., Lv, Z.H., Huang, R.Z., Huang, Q.Z., Lei, L. & Shi, S.R. (2004) Screening of pepper germplasm for resistance to TMV, CMV, phytophthora blight and anthracnose. Southwest China Journal of Agricultural Sciences 18: 108–110. [in Chinese]
- Liu, X., Zheng, X.J., Khaskheli, M.I., Sun, X.F., Chang, X.L. & Gong, G.S. (2020) Identification of Colletotrichum Species Associated with Blueberry Anthracnose in Sichuan, China. Pathogens 9 (9): 718. https://doi.org/10.3390/pathogens9090718
- Nylander, J.A.A. (2004) MrModeltest v2, program distributed by the author. Evolutionary Biology Centre, Uppsala University.
- O’Donnell, K. & Cigelnik, E. (1997) Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. MoIecular Phylogenetics and Evolution 7: 103–116. https://doi.org/10.1006/mpev.1996.0376
- Page, R.D.M. (1996) TreeView: An application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12: 357–358. https://doi.org/10.1093/bioinformatics/12.4.357
- Poonpolgul, S. & Kumphai, S. (2007) Chilli pepper anthracnose in Thailand. The First International Symposium on Chili Anthracnose. 23 Convention Center, Seoul National University, Korea.
- Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574. https://doi.org/10.1093/bioinformatics/btg180
- Shang, X.N., Liu, J.A., Feng, F.S. & Zhou, G.Y. (2021) Screening, identification and antagonistic effect of endophytic antagonistic bacterial strains from Camellia oleifera. Chinese Journal of Biological Control 37: 575–583. [in Chinese]
- Swofford, D.L. (2003) PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4.0b10. Sinauer Associates.
- Templeton, M.D., Rikkerink, E.H.A., Solon, S.L. & Crowhurst, R.N. (1992) Cloning and molecular characterization of the glyceraldehyde-3-phosphate dehydrogenase-encoding gene and cDNA from the plant pathogenic fungus Glomerella cingulata. Gene 122: 225–230. https://doi.org/10.1016/0378-1119(92)90055-t
- Than, P.P., Prihastuti, H., Phoulivong, S., Taylor, P.W.J. & Hyde, K.D. (2008) Chilli anthracnose disease caused by Colletotrichum species. Journal of Zhejiang University Science B 9: 764–778. https://doi.org/10.1631/jzus.B0860007
- Xie, S.X. & Lei, C.Y. (2023) Study on the extraction of polyphenols from Camellia oleifera leaves and its inhibitory effect on common plant pathogenic fungi. Natural Product Research and Development 35 (9). [in Chinese]
- Wang, Y., Xiong, F., Lu, Q., Hao, X., Zheng, M., Wang, L., Li, N., Ding, C., Wang, X. & Yang, Y. (2019) Diversity of Pestalotiopsis-like species causing gray blight disease of tea plants (Camellia sinensis) in China, including two novel Pestalotiopsis species, and analysis of their pathogenicity. Plant Disease 103: 2548–2558. https://doi.org/10.1094/PDIS-02-19-0264-RE
- Weir, B.S., Johnston, P.R. & Damm, U. (2012) The Colletotrichum gloeosporioides species complex. Studies in Mycology 73: 115–180. https://doi.org/10.3114/sim0011
- White, T.J., Bruns, T., Lee, S. & Taylor, J.W. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR Protocols: A Guide to Methods and Applications. Academic Press, New York, pp. 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Zhang, S.M. & Wang, Z.S. (2018) A preliminary study on quality regionalization of buckwheat resources in China. Gansu Agricultural Science and Technology (8): 81–84. [in Chinese]
- Zhang, R.M., Liu, H.N., Yao, H.P., Wang, X.L. & Li, C.L. (2016) Cloning andepitope analysis of a novel allergy protein TBW17 from tartary buckwheat. Genomics and Applied Biology 35 (12). [in Chinese]