Abstract
Pseudoplagiostoma dipterocarpicola sp. nov. is described herein on the basis material collected from twigs and fruits of Dipterocarpus sp. from Chiang Mai, Thailand. Phylogenetic analyses based on ITS, LSU, tef1-α and tub2 DNA sequence data revealed this new species with a distinct asexual morph belongs to the family Pseudoplagiostomataceae. Pseudoplagiostoma dipterocarpicola is closely related to P. mangiferae but differs in the thick wall present at near the base of the conidiomata, with two types of conidiogenous cells, these ranging from cylindrical with an elongated slimy neck to ampulliform and having a wider base, and lacking paraphyses. The morphology of this new species is described and illustrated.
References
Bezerra, J.D.P., Pádua, A.P.S.L., Oliveira, T.G.L., Paiva, L.M., Guarnaccia, V., Fan, X.L. & Souza-Motta, C.M. (2019) Pseudoplagiostoma myracrodruonis (Pseudoplagiostomataceae, Diaporthales): a new endophytic species from Brazil. Mycological Progress 18: 1329–1339. https://doi.org/10.1007/s11557-019-01531-0
Capella-Gutiérrez, S., Silla-Martínez, J.M. & Gabaldón, T. (2009) trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25: 1972–1973. https://doi.org/10.1093/bioinformatics/btp348
Carbone, I. & Kohn, L.M. (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553–556. https://doi.org/10.1080/00275514.1999.12061051
Cheewangkoon, R., Groenewald, J.Z., Verkley, G.J.M., Hyde, K.D., Wingfield, M.J., Gryzenhout, M., Summerell, B.A., Denman, S., Toanun, C. & Crous, P.W. (2010) Re-evaluation of Cryptosporiopsis eucalypti and Cryptosporiopsis-like species occurring on Eucalyptus leaves. Fungal Diversity 44: 89–105. https://doi.org/10.1007/s13225-010-0041-5
Chethana, K.W.T., Niranjan, M., Dong, W., Samarakoon, M.C., Bao, D.F., Calabon, M.S., Chaiwan, N., Chuankid, B., Dayarathne, M.C., de Silva, N.I., Devadatha, B., Dissanayake, A.J., Goonasekara, I.D., Huanraluek, N., Jayawardena, R.S., Karunarathna, A., Luo, Z.L., Marasinghe, D.S., Ma, X.Y., Norphanphoun, C., Pem, D., Perera, R.H., Rathnayaka, A.R., Raspé, O., Samarakoon, B.C., Senwanna, C., Sun, Y.R., Tang, X., Thiyagaraja, V., Tennakoon, D.S., Zeng, M., Zeng, X.Y., Zhang, J.Y., Zhang, S.N., Bulgakov, T.S., Camporesi, E., Sarma, V.V., Wang, Y., Bhat, D.J. & Hyde, K.D. (2021) AJOM new records and collections of fungi: 101-150. Asian Journal of Mycology 4: 113–260. https://doi.org/10.5943/ajom/4/1/8
Crous, P.W., Summerell, B.A., Shivas, R.G., Burgess, T.I., Decock, C.A., Dreyer, L.L., Granke, L.L., Guest, D.I., Hardy, G.E., Hausbeck, M.K., Hüberli, D., Jung, T., Koukol, O., Lennox, C.L., Liew, E.C., Lombard, L., McTaggart, A.R., Pryke, J.S., Roets, F., Saude, C., Shuttleworth, L.A., Stukely, M.J., Vánky, K., Webster, B.J., Windstam, S.T. & Groenewald, J.Z. (2012) Fungal Planet description sheets: 107–127. Persoonia 28: 138–182. https://doi.org/10.3767/003158512X652633
Crous, P.W., Luangsa-Ard, J.J., Wingfield, M.J., Carnegie, A.J., Hernández-Restrepo, M., Lombard, L., Roux, J., Barreto, R.W., Baseia, I.G., Cano-Lira, J.F., Martín, M.P., Morozova, O.V., Stchigel, A.M., Summerell, B.A., Brandrud, T.E., Dima, B., García, D., Giraldo, A., Guarro, J., Gusmão, L.F.P., Khamsuntorn, P., Noordeloos, M.E., Nuankaew, S., Pinruan, U., Rodríguez-Andrade, E., Souza-Motta, C.M., Thangavel, R., van Iperen, A.L., Abreu, V.P., Accioly, T., Alves, J.L., Andrade, J.P., Bahram, M., Baral, H.O., Barbier, E., Barnes, C.W., Bendiksen, E., Bernard, E., Bezerra, J.D.P., Bezerra, J.L., Bizio, E., Blair, J.E., Bulyonkova, T.M., Cabral, T.S., Caiafa, M.V., Cantillo, T., Colmán, A.A., Conceição, L.B., Cruz, S., Cunha, A.O.B., Darveaux, B.A., da Silva, A.L., da Silva, G.A., da Silva, G.M., da Silva, R.M.F., de Oliveira, R.J.V., Oliveira, R.L., De Souza, J.T., Dueñas, M., Evans, H.C., Epifani, F., Felipe, M.T.C., Fernández-López, J., Ferreira, B.W., Figueiredo, C.N., Filippova, N.V., Flores, J.A., Gené, J., Ghorbani, G., Gibertoni, T.B., Glushakova, A.M., Healy, R., Huhndorf, S.M., Iturrieta-González, I., Javan-Nikkhah, M., Juciano, R.F., Jurjevi?, Ž., Kachalkin, A.V., Keochanpheng, K., Krisai-Greilhuber, I., Li, Y.C., Lima, A.A., Machado, A.R., Madrid, H., Magalhães, O.M.C., Marbach, P.A.S., Melanda, G.C.S., Miller, A.N., Mongkolsamrit, S., Nascimento, R.P., Oliveira, T.G.L., Ordoñez, M.E., Orzes, R., Palma, M.A., Pearce, C.J., Pereira, O.L., Perrone, G., Peterson, S.W., Pham, T.H.G., Piontelli, E., Pordel, A., Quijada, L., Raja, H.A., Rosas de Paz, E., Ryvarden, L., Saitta, A., Salcedo, S.S., Sandoval-Denis, M., Santos, T.A.B., Seifert, K.A., Silva, B.D.B., Smith, M.E., Soares, A.M., Sommai, S., Sousa, J.O., Suetrong, S., Susca, A., Tedersoo, L., Telleria, M.T., Thanakitpipattana, D., Valenzuela-Lopez, N., Visagie, C.M., Zapata, M. & Groenewald, J.Z. (2018) Fungal Planet description sheets: 785-867. Persoonia 41: 238–417. https://doi.org/10.3767/persoonia.2018.41.12.
Cubeta, M.A., Echandi, E., Abernethy, T. & Vilgalys, R. (1991) Characterization of anastomosis groups of binucleate Rhizoctonia species using restriction analysis of an amplified ribosomal RNA gene. Phytopathology 81: 1395–1400. https://doi.org/10.1094/Phyto-81-1395
Elouard, C. (1998) Pests and Diseases of Dipterocarpaceae. A Review of Dipterocarps: Taxonomy, Ecology and Silviculture. Center for International Forestry Research, Indonesia. pp. 115–131.
Fan, X.L., Du, Z., Bezerra, J.D.P. & Tian, C.M. (2018) Taxonomic circumscription of Melanconis-like fungi causing canker disease in China. MycoKeys 42: 89–124. https://doi.org/10.3897/mycokeys.42.29634
Farr, D.F. & Rossman, A.Y. (2021) Fungal Databases, U.S. National Fungus Collections, ARS, USDA. Available from: https://nt.ars-grin.gov/fungaldatabases/ (accessed 19 October 2021)
Glass, N.L. & Donaldson, G.C. (1995) Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Appl Environ Microbiol 61: 1323–1330.
Guarnaccia, V., Groenewald, J.Z., Woodhall, J., Armengol, J., Cinelli, T., Eichmeier, A., Ezra, D., Fontaine, F., Gramaje, D., Gutierrez-Aguirregabiria, A., Kaliterna, J., Kiss, L., Larignon, P., Luque, J., Mugnai, L., Naor, V., Raposo, R., Sándor, E., Váczy, K.Z. & Crous, P.W. (2018) Diaporthe diversity and pathogenicity revealed from a broad survey of grapevine diseases in Europe. Persoonia 40: 135–153. https://doi.org/10.3767/persoonia.2018.40.06
Hillis, D.M. & Bull, J.J. (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic biology 42: 182–192. https://doi.org/10.1093/sysbio/42.2.182
Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754–755. https://doi.org/10.1093/bioinformatics/17.8.754
Hyde, K.D., Norphanphoun, C., Maharachchikumbura, S.S.N., Bhat, D.J., Jones, E.B.G., Bundhun, D., Chen, Y.J., Bao, D.F., Boonmee, S., Calabon, M.S., Chaiwan, N., Chethana, K.W.T., Dai, D.Q., Dayarathne, M.C., Devadatha, B., Dissanayake, A.J., Dissanayake, L.S., Doilom, M., Dong, W., Fan, X.L., Goonasekara, I.D., Hongsanan, S., Huang, S.K., Jayawardena, R.S., Jeewon, R., Karunarathna, A., Konta, S., Kumar, V., Lin, C.G., Liu, J.K., Liu, N.G., Luangsa-ard, J., Lumyong, S., Luo, Z.L., Marasinghe, D.S., McKenzie, E.H.C., Niego, A.G.T., Niranjan, M., Perera, R.H., Phukhamsakda, C., Rathnayaka, A.R., Samarakoon, M.C., Samarakoon, S.M.B.C., Sarma, V.V., Senanayake, I.C., Shang, Q.J., Stadler, M., Tibpromma, S., Wanasinghe, D.N., Wei, D.P., Wijayawardene, N.N., Xiao, Y.P., Yang, J., Zeng, X.Y., Zhang, S.N. & Xiang, M.M. (2020) Refined families of Sordariomycetes. Mycosphere 11: 305–1059. https://doi.org/10.5943/ mycosphere/11/1/7
Index Fungorum (2021) https://www.indexfungorum.org/Names/Names.asp. (accessed 19 October 2021).
Jayasiri, S.C., Hyde, K.D., Ariyawansa, H.A., Bhat, J., Buyck, B., Cai, L., Dai, Y.C., Abd-Elsalam, K.A., Ertz, D., Hidayat, I., Jeewon, R., Jones, E.B.G., Bahkali, A.H., Karunarathna, S.C., Liu, J.K., Luangsa-ard, J.J., Lumbsch, H.T., Maharachchikumbura, S.S.N., McKenzie, E.H.C., Moncalvo, J.M., Ghobad-Nejhad, M., Nilsson, H., Pang, K.L., Pereira, O.L., Phillips, A.J.L., Raspé, O., Rollins, A.W., Romero, A.I., Etayo, J., Selçuk, F., Stephenson, S.L., Suetrong, S., Taylor, J.E., Tsui, C.K.M., Vizzini, A., Abdel-Wahab, M.A., Wen, T.C., Boonmee, S., Dai, D.Q., Daranagama, D.A., Dissanayake, A.J., Ekanayaka, A.H., Fryar, S.C., Hongsanan, S., Jayawardena, R.S., Li, W.J., Perera, R.H., Phookamsak, R., de Silva, N.I., Thambugala, K.M., Tian, Q., Wijayawardene, N.N., Zhao, R.L., Zhao, Q., Kang, J.C. & Promputtha, I. (2015) The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. Fungal Diversity 74: 3–18. https://doi.org/10.1007/s13225-015-0351-8
Jeewon, R. & Hyde, K.D. (2016) Establishing species boundaries and new taxa among fungi: recommendations to resolve taxonomic ambiguities. Mycosphere 7: 1669–1677. https://doi.org/10.5943/mycosphere/7/11/4
Katoh, K., Rozewicki, J. & Yamada, K.D. (2017) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in bioinformatics 20: 1160–1166. https://doi.org/10.1093/bib/bbx108
Maury-Lechon, G. & Curtet, L. (1998) Biogeography and evolutionary systematics of Dipterocarpaceae. In Appanah, S. & Turnbull, J.M. (Eds.) A Review of Dipterocarps: Taxonomy, Ecology and Silviculture. Center for International Forestry Research, Indonesia, pp. 5–44.
Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: 2010 gateway computing environments workshop (GCE). https://doi.org/ 10.1109/GCE.2010.5676129
Phookamsak, R., Hyde, K.D., Jeewon, R., Bhat, D.J., Jones, E.G., Maharachchikumbura, S.S.N., Raspé,O., Karunarathna, S.C., Wanasinghe, D.N., Hongsanan,S., Doilom,M., Tennakoon, D.S., Machado, A.R., Firmino, A.L., Ghosh, A., Karunarathna, A., Meši?, A., Dutta, A.K., Thongbai, B., Devadatha, B., Norphanphoun, C., Senwanna, C., Wei, D.P., Pem, D., Ackah, F.K., Wang, G.N., Jiang, H.B., Madrid, H., Lee, H.B., Goonasekara, I.D., Manawasinghe, I.S., Kušan, I., Cano, J., Gené, J., Li, J.F., Das, K., Acharya, K., Anil Raj, K.N., Deepna Latha, K.P., Thilini Chethana, K.W., He, M.Q., Dueñas, M., Jadan, M., Martín, M.P., Samarakoon, M.C., Dayarathne, M.C., Raza, M., Park, M.S., Telleria, M.T., Chaiwan, N., Mato?ec, N., de Silva, N.I., Pereira, O.L., Singh, P.N., Manimohan, P., Uniyal, P., Shang, Q.J., Bhatt, R.P., Perera, R.H., Alvarenga, R.L.M., Sandra Nogal-Prata, Singh, S.K., Vadthanarat, S., Oh, S.Y., Huang, S.K., Rana, S., Konta, S., Paloi, S., Jayasiri, S.C., Jeon, S.J., Mehmood, T., Gibertoni, T.B., Nguyen, T.T.T., Singh, U., Thiyagaraja, V., Sarma, V.V., Dong, W., Yu, X.D., Lu, Y.Z., Lim, Y.W., Chen, Y., Tkal?ec, Z., Zhang, Z.F., Luo, Z.L., Daranagama, D.A., Thambugala, K.M., Tibpromma, S., Camporesi, E., Bulgakov, T.S., Dissanayake, A.J., Senanayake, I.C., Dai, D.Q., Tang, L.Z., Khan, S., Zhang, H., Promputtha, I., Cai, L., Chomnunti, P., Zhao, R.L., Lumyong, S., Boonmee, S., Wen, T.C., Mortimer, P.E. & Xu, J.C. (2019) Fungal diversity notes 929–1035: taxonomic and phylogenetic contributions on genera and species of fungi. Fungal diversity 95: 1–273. https://doi.org/10.1007/s13225-019-00421-w
Ronquist, F., Teslenko, M., Van Der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and model choice across a large model space. Systematic Biology 61: 539–542. https://doi.org/10.1093/sysbio/sys029
Senanayake, I.C., Jeewon, R., Chomnunti, P., Wanasinghe, D.N., Norphanphoun, C., Karunarathna, A., Pem, D., Perera, R.H., Camporesi, E., McKenzie, E.H.C., Hyde, K.D. & Karunarathna, S.C. (2018) Taxonomic circumscription of Diaporthales based on multigene phylogeny and morphology. Fungal Divers 93: 241–443. https://doi.org/10.1007/s13225-018-0410-z
Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML Web servers. Systematic Biology 57: 758–771. https://doi.org/10.1080/10635150802429642
Suwannarach, N., Kumla, J. & Lumyong, S. (2016) Pseudoplagiostoma dipterocarpi sp. nov., a new endophytic fungus from Thailand. Mycoscience 57: 118–122. https://dx.doi.org/10.1016/j.myc.2015.12.002
Swofford, D.L. (2002) PAUP*: Phylogenetic analysis using parsimony (and other methods), version 4.0 b10. MA: Sinauer Associates, Sunderland, UK.
Tang, X., Goonasekara, I.D., Jayawardena, R.S., Jiang, H.B., Li, J.F., Hyde, K.D. & Kang, J.C. (2020) Arthrinium bambusicola (Fungi, Sordariomycetes), a new species from Schizostachyum brachycladum in northern Thailand. Biodiversity Data Journal 8: e58755. https://dx.doi.org/10.3897/BDJ.8.e58755
Vaidya, G., Lohman, D.J. & Meier, R. (2011) SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information. Cladistics 27: 171–180. https://dx.doi.org/10.1111/j.1096-0031.2010.00329.x
Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of bacteriology 172: 4238–4246. https://dx.doi.org/10.1128/jb.172.8.4238-4246.1990
White, T.J., Bruns, T., Lee, S.J.W.T. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR protocols: a guide to methods and applications 18: 315–322. https://dx.doi.org/10.1016/B978-0-12-372180-8.50042-1
