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Issue: Vol. 674 No. 2: 27 Nov. 2024
Type: Article
Published: 2024-11-27
DOI: 10.11646/phytotaxa.674.2.4
Page range: 218-228
Abstract views: 45
PDF downloaded: 2

Emended description and phylogenetic placement of Dermatosorus schoenoplecti (Ustilaginales)

W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Kraków, Poland
Plant Evolutionary Ecology, Institute of Evolution and Ecology, University of Tübingen, Auf der Morgenstelle 5, 72076 Tübingen, Germany
University of Yaoundé 1, Mycological Laboratory, B.P. 1456 Yaoundé, Cameroon
W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Kraków, Poland
Africa Cyperaceae phylogeny Schoenoplectiella mucronata smut fungi taxonomy Ustilaginomycotina Fungi

Abstract

The smut fungal genus Dermatosorus (Ustilaginales, Anthracoideaceae) currently contains six species that infect ovaries of host plants in the family Cyperaceae (from the so called Abildgaardieae—Eleocharideae—Fuireneae—Cypereae-Clade). This genus is poorly known and sparsely represented in nucleotide databases. An emended description, illustration and phylogenetic placement of the rare species Dermatosorus schoenoplecti collected in Cameroon are provided. In addition, the global diversity and distribution of Dermatosorus species are reviewed.

References

  1. Altekar, G., Dwarkadas, S., Huelsenbeck, J.P. & Ronquist, F. (2004) Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20: 407–415. https://doi.org/10.1093/bioinformatics/btg427
  2. Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25: 3389–3402. https://doi.org/10.1093/nar/25.17.3389
  3. Bauer, R., Lutz, M., Piątek, M., Vánky, K. & Oberwinkler, F. (2007) Flamingomyces and Parvulago, new genera of marine smut fungi (Ustilaginomycotina). Mycological Research 111: 1199–1206. https://doi.org/10.1016/j.mycres.2007.06.018
  4. Begerow, D., Bauer, R. & Oberwinkler, F (1998[1997]) Phylogenetic studies on nuclear LSU rDNA sequences of smut fungi and related taxa. Canadian Journal of Botany 75: 2045–2056. https://doi.org/10.1139/b97-916
  5. Begerow, D., Stoll, M. & Bauer, R. (2007[2006]) A phylogenetic hypothesis of Ustilaginomycotina based on multiple gene analyses and morphological data. Mycologia 98: 906–916. https://doi.org/10.1080/15572536.2006.11832620
  6. Castresana, J. (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17: 540–552. https://doi.org/10.1093/oxfordjournals.molbev.a026334
  7. Darriba, D., Posada, D., Kozlov, A.M., Stamatakis, A., Morel, B. & Flouri, T. (2020) ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models. Molecular Biology and Evolution 37: 291–294. https://doi.org/10.1093/molbev/msz189
  8. Denchev, T.T., Martín, M.P., Kemler, M. & Denchev, C.M. (2021) Additions to the smut fungi of the Iberian Peninsula. Anales Del Jardín Botánico De Madrid 78: e109. https://doi.org/10.3989/ajbm.2589
  9. Edler, D., Klein, J., Antonelli, A. & Silvestro, D. (2021) raxmlGUI 2.0: a graphical interface and toolkit for phylogenetic analyses using RAxML. Methods in Ecology and Evolution 12: 373–377. https://doi.org/10.1111/2041-210X.13512
  10. González, V., Vánky, K., Platas, G. & Lutz, M. (2007) Portalia gen. nov. (Ustilaginomycotina). Fungal Diversity 27: 45–59.
  11. Huelsenbeck, J.P. & Rannala, B. (2004) Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Systematic Biology 53: 904–913. https://doi.org/10.1080/10635150490522629
  12. Katoh, K., Rozewicki, J. & Yamada, K.D. (2019) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20: 1160–1166. https://doi.org/10.1093/bib/bbx108
  13. Kijpornyongpan, T., Mondo, S.J., Barry, K., Sandor, L., Lee, J., Lipzen, A., Pangilinan, J., LaButti, K., Hainaut, M., Henrissat, B., Grigoriev, I.V., Spatafora, J.W. & Aime, M.C. (2018) Broad genomic sampling reveals a smut pathogenic ancestry of the fungal clade Ustilaginomycotina. Molecular Biology and Evolution 35: 1840–1854. https://doi.org/10.1093/molbev/msy072
  14. Kozlov, A.M., Darriba, D., Flouri, T., Morel, B. & Stamatakis, A. (2019) RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics 35: 4453–4455. https://doi.org/10.1093/bioinformatics/btz305
  15. Kruse, J., Choi, Y.J. & Thines, M. (2017) New smut-specific primers for the ITS barcoding of Ustilaginomycotina. Mycological Progress 16: 213–221. https://doi.org/10.1007/s11557-016-1265-x
  16. Kruse, J., McTaggart, A.R., Dhileepan, K., Musili, P.M., Mutie, F.M., Ntandu, J.E., Edogbanya, P.R.O., Chukwuma, E.C. & Shivas, R.G. (2021) Broad and narrow host ranges in resolved species of Cintractia limitata s. lat. (Anthracoideaceae, Ustilaginomycotina) on Cyperus. Mycological Progress 20: 191–201. https://doi.org/10.1007/s11557-020-01664-7
  17. Larridon, I., Zuntini, A.R., Léveillé-Bourret, É., Barrett, R.L., Starr, J.R., Muasya, A.M., Villaverde, T., Bauters, K., Brewer, G.E., Bruhl, J.J., Costa, S.M., Elliott, T.L., Epitawalage, N., Escudero, M., Fairlie, I., Goetghebeur, P., Hipp, A.L., Jiménez-Mejías, P., Sabino Kikuchi, I.A.B., Luceño, M., Márquez-Corro, J.I., Martín-Bravo, S., Maurin, O., Pokorny, L., Roalson, E.H., Semmouri, I., Simpson, D.A., Spalink, D., Thomas, W.W., Wilson, K.L., Xanthos, M., Forest, F. & Baker, W.J. (2021) A new classification of Cyperaceae (Poales) supported by phylogenomic data. Journal of Systematics and Evolution 59: 852–895. https://doi.org/10.1111/jse.12757
  18. Lemoine, F., Correia, D., Lefort, V., Doppelt-Azeroual, O., Mareuil, F., Cohen-Boulakia, S. & Gascuel, O. (2019) NGPhylogeny.fr: new generation phylogenetic services for non-specialists. Nucleic Acids Research 47: W260–W265. https://doi.org/10.1093/nar/gkz303
  19. Li, Y.Y., Wang, M.M., Groenewald, M., Li, A.H., Guo, Y.T., Wu, F., Zhang, B.Q., Tanaka, E., Wang, Q.M., Bai, F.Y. & Begerow, D. (2022) Proposal of two new combinations, twenty new species, four new genera, one new family, and one new order for the anamorphic basidiomycetous yeast species in Ustilaginomycotina. Frontiers in Microbiology 12: 777338. https://doi.org/10.3389/fmicb.2021.777338
  20. Ling, L. (1949) A second contribution to the knowledge of the Ustilaginales of China. Mycologia 41: 252–269. https://doi.org/10.1080/00275514.1949.12017768
  21. Lutz, M., Bauer, R., Begerow, D., Oberwinkler, F. & Triebel, D. (2004) Tuberculina: rust relatives attack rusts. Mycologia 96: 614–626. https://doi.org/10.1080/15572536.2005.11832957
  22. Lutz, M., Vánky, K. & Piątek, M. (2012) Shivasia gen. nov. for the Australasian smut Ustilago solida that historically shifted through five different genera. IMA Fungus 3: 143–154. https://doi.org/10.5598/imafungus.2012.03.02.06
  23. Matheny, P.B., Gossmann, J.A., Zalar, P., Arun Kumar, T.K. & Hibbett, D.S. (2006) Resolving the phylogenetic position of the Wallemiomycetes: an enigmatic major lineage of Basidiomycota. Canadian Journal of Botany 84: 1794–1805. https://doi.org/10.1139/b06-128
  24. Piątek, M. (2010) The smut genera Dermatosorus and Testicularia in Africa. In: 19th AETFAT Congress. Antananarivo, Madagascar.
  25. Piątek, M., Lutz, M., Sousa, F.M.P., Santos, A.R.O., Félix, C.R., Landell, M.F., Gomes, F.C.O. & Rosa, C.A. (2017) Pattersoniomyces tillandsiae gen. et comb. nov.: linking sexual and asexual morphs of the only known smut fungus associated with Bromeliaceae. Organisms Diversity & Evolution 17: 531–543. https://doi.org/10.1007/s13127-017-0340-8
  26. Piepenbring, M. (2003) Smut fungi (Ustilaginomycetes p.p. and Microbotryales, Basidiomycota). Flora Neotropica 86: 1–291.
  27. Piepenbring, M., Begerow, D. & Oberwinkler, F. (1999) Molecular sequence data assess the value of morphological characteristics for a phylogenetic classification of the species of Cintractia. Mycologia 91: 485–498. https://doi.org/10.1080/00275514.1999.12061042
  28. Piepenbring, M., Yilmaz, E. & Weisenborn, J.L.F. (2013) Two new records of smut fungi for Panama and new combinations into the genus Tolyposporium. Tropical Plant Pathology 38: 3–10. https://doi.org/10.1590/S1982-56762013000100001
  29. Rambaut, A. (2012) Figtree v1.4. Institute of Evolutionary Biology, University of Edinburgh, Edinburgh. Available from: http://tree.bio.ed.ac.uk/software/figtree/ (accessed 26 Nov. 2024)
  30. Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MRBAYES 3.2: efficient Bayesian phylogenetic inference and model selection across a large model space. Systematic Biology 61: 539–542. https://doi.org/10.1093/sysbio/sys029
  31. Shivas, R.G., Athipunyakom, P., Likhitekaraj, S., Butranu, W., Bhasabutra, T., Somrith, A., Vánky, K. & Vánky, C. (2007) An annotated checklist of smut fungi (Ustilaginomycetes) from Thailand. Australasian Plant Pathology 36: 376–382. https://doi.org/10.1071/AP07036
  32. Shivas, R.G., Athipunyakom, P., Beasley, D.R., McTaggart, A.R. & Vánky, K. (2013) Smut Fungi of Thailand. Available from: http://collections.daff.qld.gov.au/thaismutfungi/ (accessed 9 Aug. 2023)
  33. Shivas, R.G., Beasley, D.R. & McTaggart, A.R. (2014) Online identification guides for Australian smut fungi (Ustilaginomycotina) and rust fungi (Pucciniales). IMA Fungus 5: 195–202. https://doi.org/10.5598/imafungus.2014.05.02.03
  34. Shivas, R., McTaggart, A., Begerow, D., Denchev, C.M., Denchev, T.T., Kemler, M., Kruse, J., Lutz, M., Piątek, M., Piepenbring, M. & Thines, M. (2022) Obituary for Kálmán Vánky (1930–2021). Mycological Progress 21: 53. https://doi.org/10.1007/s11557-022-01801-4
  35. Stoll, M., Piepenbring, M., Begerow, D. & Oberwinkler, F. (2003) Molecular phylogeny of Ustilago and Sporisorium species (Basidiomycota, Ustilaginales), based on internal transcribed spacer (ITS) sequences. Canadian Journal of Botany 81: 976–984. https://doi.org/10.1139/b03-094
  36. Talavera, G. & Castresana, J. (2007) Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Systematic Biology 56: 564–577. https://doi.org/10.1080/10635150701472164
  37. Tanaka, E. (2021) Five new records of smut fungi (Ustilaginomycotina) in Japan. Japanese Journal of Mycology 62: 57–64. https://doi.org/10.18962/jjom.jjom.R02-21
  38. Thirumalachar, M.J. & Narasimhan, M.J. (1952) Zundelula, a new genus of smuts. Sydowia 6: 407–411.
  39. Vánky, K. (1987) The genus Dermatosorus (Ustilaginales). Transactions of the British Mycological Society 89: 61–65. https://doi.org/10.1016/S0007-1536(87)80058-X
  40. Vánky, K. (2001) The emended Ustilaginaceae of the modern classificatory system for smut fungi. Fungal Diversity 6: 131–147.
  41. Vánky, K. (2004) Pilocintractia gen. nov. (Ustilaginomycetes). Mycologia Balcanica 1: 169–174.
  42. Vánky, K. (2008) Taxonomic studies on Ustilaginomycetes—28. Mycotaxon 106: 133–178.
  43. Vánky, K. (2012) Smut fungi of the world. St Paul: American Phytopathological Society Press.
  44. Vánky, K. (2013) Illustrated genera of smut fungi (3rd ed.). St Paul: American Phytopathological Society Press.
  45. Vánky, K. & Shivas, R.G. (2003) Further new smut fungi (Ustilaginomycetes) from Australia. Fungal Diversity 14: 243–264.
  46. Vánky, K. & Shivas, R.G. (2008) Fungi of Australia: the smut fungi. Melbourne: CSIRO Publishing.
  47. White, F. (1983) The vegetation of Africa. Unesco, Switzerland.