Skip to main content Skip to main navigation menu Skip to site footer
Responsive image
Issue: Vol. 672 No. 1: 19 Nov. 2024
Type: Article
Published: 2024-11-19
DOI: 10.11646/phytotaxa.672.1.6
Page range: 89-98
Abstract views: 39
PDF downloaded: 2

Infundibulicybe swatica (Basidiomycota, Agaricales), a new species from Pakistan

Department of Botany, Division of Science & Technology, University of Education, Lahore 54000, Pakistan. Fungal Biology and Systematics Research Laboratory, Institute of Botany, University of the Punjab, Quaid-e-Azam Campus, Lahore 54590, Pakistan.
Fungal Biology and Systematics Research Laboratory, Institute of Botany, University of the Punjab, Quaid-e-Azam Campus, Lahore 54590, Pakistan
Fungal Biology and Systematics Research Laboratory, Institute of Botany, University of the Punjab, Quaid-e-Azam Campus, Lahore 54590, Pakistan
Fungal Biology and Systematics Research Laboratory, Institute of Botany, University of the Punjab, Quaid-e-Azam Campus, Lahore 54590, Pakistan
Fungal Biology and Systematics Research Laboratory, Institute of Botany, University of the Punjab, Quaid-e-Azam Campus, Lahore 54590, Pakistan
Centre for Environmental Studies and Research, Sultan Qaboos University, P.O. Box 34, Al-Khoud 123, Sultanate of Oman. Department of Plant Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, PO Box 34, Al-Khoud 123, Sultanate of Oman.
Fungal Biology and Systematics Research Laboratory, Institute of Botany, University of the Punjab, Quaid-e-Azam Campus, Lahore 54590, Pakistan
Clitocybe ITS LSU phylogeny Sakhra Sawat Fungi

Abstract

A new species, Infundibulicybe swatica is described and illustrated from District Swat, Khyber Pakhtunkhwa, Pakistan. The new taxon is characterized by pale yellow to pale yellow brown to brown pileus with a dark brown center; a bicolorous stipe, white at the apex and pale yellow brown hues at the base; hyaline, lacrymoid to sub-lacrymoid, small, inamyloid basidiospores (6.5 × 4.2 µm); and the absence of hymenial cystidia. Molecular phylogenetic analyses based on nuclear ribosomal Internal Transcribed Spacer (ITS) and nuclear ribosomal Large Subunit (LSU) regions confirm the novelty of the taxon.

References

  1. Ahmad, H., Öztürk, M., Ahmad, W. & Khan, S.M. (2015) Status of natural resources in the uplands of the Swat Valley Pakistan. In: Climate change impacts on high-altitude ecosystems. Springer, Cham. pp. 49–98. https://doi.org/10.1007/978-3-319-12859-7_2
  2. Ahmad, S., Iqbal, S.H. & Khalid, A.N. (1997) Fungi of Pakistan. Sultan Ahmad Mycological Society of Pakistan, Punjab University Press. pp. 126.
  3. Ali, M., Khan, J., Bashir, H., Niazi, A.R., Sher, H. & Khalid, A.N. (2020) Infundibulicybe macrospora sp. nov. a new and noteworthy species from Himalayan moist temperate forests of Pakistan. Phytotaxa 452 (4): 268–277. https://doi.org/10.11646/phytotaxa.452.4.2
  4. Bas, C. (1969) Morphology and subdivision of Amanita and a monograph of its section Lepidella. Persoonia 5: 285–579.
  5. Binder, M., Larsson, K.H., Matheny, P.B. & Hibbett, D.S. (2010) Amylocorticiales ord. nov. & Jaapiales ord. nov.: early diverging clades of Agaricomycetidae dominated by corticioid forms. Mycologia 102 (4): 865–880. https://doi.org/10.3852/09-288
  6. Bruns, T.D. (1995) Thoughts on the processes that maintain local species diversity of Ectomycorrhizal fungi. Plant and Soil 170: 63–73. https://doi.org/10.1007/BF02183055
  7. Cle´mencon, H. (1984) Kompendium der Bla¨tterpilze. Clitocybe. Zeitschrift für Mykologie, Supplement 5: 1–68.
  8. Consiglio, G. & Setti, L. (2022) Infundibulicybe hongyinpan in Italia. Rivista di Micologia 65 (3): 43–54.
  9. Dai, Y.C., Zhou, L.W., Yang, Z.L., Wen, H.A., Tolgor, B. & Li, T.H. (2010) A revised checklist of edible fungi in China. Mycosystema 29: 1–21.
  10. Dentinger, B.T.M., Gaya, E., O’Brien, H., Suz, L.M., Lachlan, R., Diaz-Valderrama, J.R., Koch, R.A. & Aime, M.C. (2016) Tales from the crypt: genome mining from fungarium specimens improves resolution of the mushroom tree of life. Biological Journal of the Linnean Society 117: 11–32. https://doi.org/10.1111/bij.12553
  11. Drummond, A.J., Suchard, M.A., Xie, D. & Rambaut, A. (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29 (8): 1969–1973. https://doi.org/10.1093/molbev/mss075
  12. Gardes, M. & Bruns, T.D. (1993) ITS primers with enhanced specificity for basidiomycetes‐application to the identification of mycorrhizae & rusts. Molecular Ecology 2 (2): 113–118. https://doi.org/10.1111/j.1365-294X.1993.tb00005.x
  13. Gminder, A. (2016) Nomenclatural novelties: Atheniella, Coprinopsis, Hymenoscyphus, Infundibulicybe, Lyophyllum, Melanoleuca, Panaeolus, Phloeomana, Pyrenopeziza, Rhodocybe, Tricholomopsis spp. Index Fungorum 302. [ISSN 2049–2375]
  14. Hall, T., Biosciences, I. & Carlsbad, C. (2011) BioEdit: an important software for molecular biology. GERF Bull Biosci 2 (1): 60–61.
  15. Harmaja, H. (1969) The genus Clitocybe (Agaricales) in Fennoscandia. Karstenia 10: 5–119. https://doi.org/10.29203/ka.1969.62
  16. Harmaja, H. (2003) Notes on Clitocybe sensu lato (Agaricales). In: Annales Botanici Fennici. Finnish Zoological and Botanical Publishing Board. pp. 213–218. [ISSN 0003-3847]
  17. He, M-Q., Zhao, R-L., Hyde, K.D., Begerow, D., Kemler, M., Yurkov, A., McKenzie, E.H.C., Raspé, O., Kakishima, M., Sánchez-Ramírez, S., Vellinga, E.C., Halling, R., Papp, V., Zmitrovich, I.V., Buyck, B., Ertz, D., Wijayawardene, N.N., Cui, B.-K., Schoutteten, N., Liu, X.-Z., Li, T.-H., Yao, Y.-J., Zhu, X.-Y., Liu, A.-Q., Li, G.-J., Zhang, M.-Z., Ling, Z.-L., Cao, B., Antonín, V., Boekhout, T., da Silva, B.D.B., De Crop, E., Decock, C., Dima, B., Dutta, A.K., Fell, J.W., Geml, J., Ghobad-Nejhad, M., Giachini, A.J., Gibertoni, T.B., Gorjón, S.P., Haelewaters, D., He, S-H., Hodkinson, B.P., Horak, E., Hoshino, T., Justo, A., Lim, Y.W., Menolli Jr., N., Mešić, A., Moncalvo, J.-M., Mueller, G.M., Nagy, L.G., Nilsson, R.H., Noordeloos, M., Nuytinck, J., Orihara, T., Ratchadawan, C., Rajchenberg, M., Silva-Filho, A.G.S., Sulzbacher, M.A., Tkalčec, Z., Valenzuela, R., Verbeken, A., Vizzini, A., Wartchow, F., Wei, T.-Z., Weiß, M., Zhao, C.-L. & Kirk, P.M. (2019) Notes, outline and divergence times of basidiomycota. Fungal Diversity 99: 105–367. https://doi.org/10.1007/s13225-019-00435-4
  18. Horak, E. (2005) Ro¨hrlinge und Bla¨tterpilze in Europa. Mu¨nchen: Elsevier. 555 pp.
  19. Ishaq, M., Khan, M.B., Ullah, S., Fiaz, M. & Khalid, A.N. (2019) Infundibulicybe kotanensis sp. nov. (Tricholomataceae), a new species from Buner, Pakistan. Phytotaxa 418 (2): 195–202. https://doi. org/10.11646/phytotaxa.418.2.4
  20. Kiran, M., Khan, J., Sher, H., Pfister, D.H. & Khalid, A.N. (2018) Amanita griseofusca: A new species of Amanita in section Vaginatae from Malam Jabba, Swat, Pakistan. Phytotaxa 364 (2): 181–192. https://doi.org/10.11646/phytotaxa.364.2.5
  21. Kirk, P.M., Cannon, P.F., Minter, D.W. & Stalpers, J.A. (2008) Dictionary of the Fungi. Wallingford: CABI.
  22. Kühner, R. & Romagnesi, H. (1953) Flore analytique des champignons supérieurs. Paris, 557 pp.
  23. Liu, H., Guo, S. & Fan, L. (2018 [Edit 2019]) Infundibulicybe hongyinpan sp. nov. a well-known edible fungus from Shanxi based on both nrDNA-ITS and morphological analysis. Journal of Shanxi University (Natural Science Edition) 42: 275–280. https://doi.org/10.13451/j.cnki.shanxi.univ(nat.sci.).2018.03.16.007
  24. Matheny, P.B., Curtis, J.M., Hofstetter, V., Aime, M.C., Moncalvo, J.-M., Ge, Z.-W., Yang, Z.-L., Slot, J.C., Ammirati, J.F., Baroni, T.J., Bougher, N.L., Hughes, K.W., Lodge, D.J., Kerrigan, R.W., Seidl, M.T., Aanen, D.K., DeNitis, M., Daniele, G.M., Desjardin, D.E., Kropp, B.R., Norvell, L.L., Parker, A., Vellinga, E.C., Vilgalys, R. & Hibbett, D.S. (2006) Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98 (6): 982–995. https://doi.org/10.3852/mycologia.98.6.982
  25. Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: 2010 Gateway Computing Environments workshop (GCE). Ieee, pp. 1–8.
  26. Munsell Color Company (1975) Munsell Soil Color Charts. Baltimore, MD, USA: Munsell Color Co.
  27. Naseer, A., Khalid, A.N. & Smith, M.E. (2018) Inocybe shawarensis sp.nov. in the Inosperma clade from Pakistan. Mycotaxon 132 (4): 909–918. https://doi.org/10.5248/132.909
  28. Pilz, D. & Molina, R. (1996) Managing forest ecosystems to conserve fungus diversity and sustain wild mushroom harvests (Vol. 371). U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station. https://doi.org/10.2737/PNW-GTR-371
  29. Rambaut, A. (2012) FigTree v1. 4.0. University of Oxford, Oxford, UK. Available from: http://tree.bio.ed.ac.uk/software/figtree (accessed 18 November 2024)
  30. Rambaut, A., Suchard, M.A., Xie, D. & Drummond, A.J. (2014) Tracer v1. 6. Available from: http://beast.bio.ed.ac.uk/Tracer (accessed 18 November 2024)
  31. Sevindik, M., Akgul, H., Selamoglu, Z. & Braidy, N. (2020) Antioxidant and antigenotoxic potential of Infundibulicybe geotropa mushroom collected from Northwestern Turkiye. Oxidative Medicine and Cellular Longevity. https://doi.org/10.1155/2020/5620484.eCollection 2020
  32. Schwo¨bel, H. (1984) Trichterlinge aus dem C. gibba-Formenkreis. Beiträge zur Kenntnis der Pilze Mitteleuropas 1: 5–10.
  33. Sesli, E. & Sesli, A.T. (2017) Infundibulicybe alkaliviolascens (Tricholomataceae): Türkiye mikotası için yeni bir kayıt. Mantar Dergisi 8 (1): 6–12. https://doi.org/10.15318/Fungus.2017127491
  34. Singer, R. (1986) Agaricales in modern taxonomy. Koeltz Scientific Books. 239 pp.
  35. Stadler, T. (2009) On incomplete sampling under birth-death models and connections to the sampling-based coalescent. Journal of Theoretical Biology 261: 58–66. https://doi.org/10.1016/j.jtbi.2009.07.018
  36. Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post analysis of large phylogenies. Bioinformatics 30: 1312–1313. https://doi.org/10.1093/bioinformatics/btu033
  37. Valade, F. (2014) Nomenclatural novelties Infundibulicybe, Lepiota form/vars. Index Fungorum 189.
  38. Vesterholt, J. (2008) Infundibulicybe Harmaja. In: Knudsen, H. & Vesterholt, J. (Eds.) Funga Nordica. Copenhagen: Nordsvamp. pp 310–312.
  39. Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172 (8): 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
  40. Vizzini, A., Contu, M., Musumeci, E. & Ercole, E. (2011) A new taxon in the Infundibulicybe gibba complex (Basidiomycota, Agaricales, Tricholomataceae) from Sardinia (Italy). Mycologia 103 (1): 203–208. https://doi.org/10.3852/10-137
  41. Wei, T.Z., Li, B.B., Wang, W.J. & Yao, Y.J. (2015) Infundibulicybe alkaliviolascens, a new agaric record of China. Journal of Fungal Research 13: 284–288. https://doi. org/10.13341/j. jfr.2014.2063
  42. White, T.J., Bruns, T., Lee, S.J.W.T. & Taylor, J. (1990) Amplification & direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: a guide to methods and applications. Vol. 18 (1). Academic Press Inc., pp. 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
  43. Xu, J., Zhao, W., Yu, X., Idrees, M., Li, Y. & Qin, J. (2022) Infundibulicybe trachyspora, a new species from Northeastern China based on morphology and molecular phylogeny. Current Microbiology 79 (5): 1–9. https://doi.org/10.1007/s00284-022-02808-6
  44. Zhao, Q., Hao, Y.J., Liu, J.K., Hyde, K.D., Cui, Y.Y., Brooks, S. & Zhao, Y.C. (2016) Infundibulicybe rufa sp. nov. (Tricholomataceae), a reddish brown species from southwestern China. Phytotaxa 266 (2): 134–140. https://doi.org/10.11646/phytotaxa.266.2.7