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Published: 2024-10-30
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New records of Cora species (Hygrophoraceae, Agaricales, lichenized Basidiomycota) from Bolivia confirmed by molecular data

Department of Plant Taxonomy and Nature Protection University of Gdańsk, Wita Stwosza 59, PL-80-308 Gdańsk, Poland
Department of Plant Taxonomy and Nature Protection University of Gdańsk, Wita Stwosza 59, PL-80-308 Gdańsk, Poland
W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Kraków, Poland
W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Kraków, Poland
Department of Plant Taxonomy and Nature Protection University of Gdańsk, Wita Stwosza 59, PL-80-308 Gdańsk, Poland
Basidiomycota Cora nuITS rDNA Bolivia Neotropics Fungi

Abstract

The paper presents the first records of Cora dewisanti, C. elephas and C. hawksworthiana from Bolivia. The recognition of the three species was supported by molecular data. Phylogenetic analysis based on the internal transcribed spacer region (nuITS rDNA) clustered the Bolivian collections with sequences from previous worldwide collections. Detailed descriptions of morphology, anatomy, habitat and general distribution are presented for each species.

References

  1. Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W. & Lipman, J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25: 3389–3402. https://doi.org/10.1093/nar/25.17.3389
  2. Chaves, J.L., Lücking, R., Sipman, H.J.M., Umaña, L. & Navarro, E. (2004) A first assessment of the Ticolichen biodiversity inventory in Costa Rica: the genus Dictyonema (Polyporales: Atheliaceae). Bryologist 107: 242–247. https://doi.org/10.1639/0007-2745(2004)107[0242:AFAOTT]2.0.CO;2
  3. Clement, M., Snell, Q., Walke, P., Posada, D. & Crandall, K. (2002) TCS: estimating gene genealogies. 16th International Parallel and Distributed Processing Symposium 2: 184. https://doi.org/10.1109/IPDPS.2002.1016585
  4. Culberson, C.F. & Kristinsson, H. (1970) A standardized method for the identification of lichen products. Journal of Chromatography A 46: 85–93. https://doi.org/10.1016/S0021-9673(00)83967-9
  5. Dal-Forno, M., Lawrey, J.D., Sikaroodi, M., Bhattarai, S., Gillevet, P.M., Sulzbacher, M. & Lücking, R. (2013) Starting from scratch: Evolution of the lichen thallus in the basidiolichen Dictyonema (Agaricales: Hygrophoraceae). Fungal Biology 117 (9): 584–598. https://doi.org/10.1016/j.funbio.2013.05.006
  6. Dal-Forno, M., Kaminsky, L., Rosentreter, R., McMullin, R.T., Aptroot, A. & Lücking, R. (2019) A first phylogenetic assessment of Dictyonema s.lat. in southeastern North America reveals three new basidiolichens, described in honor of James D. Lawrey. Plant and Fungal Systematics 64 (2): 383–392. https://doi.org/10.2478/pfs-2019-0025
  7. Dal-Forno, M., Lawrey, J.D., Moncada, B., Bungartz, F., Grube, M., Schuettpelz, E. & Lücking, R. (2022) DNA Barcoding of Fresh and Historical Collections of Lichen-Forming Basidiomycetes in the Genera Cora and Corella (Agaricales: Hygrophoraceae): A Success Story? Diversity 14: 284. https://doi.org/10.3390/d14040284
  8. Ertz, D., Flakus, A., Oset, M., Sipman, H.J.M. & Kukwa, M. (2015) A first assessment of lichenized Arthoniales in Bolivia with descriptions of two new species. Phytotaxa 217: 1–25. https://doi.org/10.11646/phytotaxa.217.1.1
  9. Flakus, A. & Lücking, R. (2008) New species and additional records of foliicolous lichenized fungi from Bolivia. Lichenologist 40 (5): 423–436. https://doi.org/10.1017/S0024282908007378
  10. Flakus, A. & Wilk, K. (2006) Contribution to the knowledge of the lichen biota of Bolivia. Journal of the Hattori Botanical Laboratory 99: 307–318. https://doi.org/10.18968/jhbl.99.0_307
  11. Flakus, A., Sipman, H.J.M., Bach, K., Rodriguez-Flakus, P., Knudsen, K., Ahti, T., Schiefelbein, U., Palice, Z., Meneses, R., Jabłońska, A., Oset, M. & Kukwa, M. (2013) Contribution to the knowledge of the lichen biota of Bolivia. 5. Polish Botanical Journal 58 (2): 697–733. https://doi.org/10.2478/pbj-2013-0073
  12. Galtier, N., Gouy, M. & Gautier, C. (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Computational Applied Biosciences 12: 543–548. https://doi.org/10.1093/bioinformatics/12.6.543
  13. Gouy, M., Guindon, S. & Gascuel, O. (2010) SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution 27: 221–224. https://doi.org/10.1093/molbev/msp259
  14. Guzow-Krzemińska, B. & Węgrzyn, G. (2000) Potential use of restriction analysis of PCR amplified DNA fragments in construction of molecular data-based identification keys of lichens. Mycotaxon 76: 305–313.
  15. Guzow-Krzemińska, B., Flakus, A., Kosecka, M., Jabłońska, A., Rodriguez-Flakus, P. & Kukwa, M. (2019a) New species and records of lichens from Bolivia. Phytotaxa 397: 257–279. https://doi.org/10.11646/phytotaxa.397.4.1
  16. Guzow-Krzemińska, B., Jabłońska, A., Flakus, A., Rodriguez-Flakus, P., Kosecka, M. & Kukwa, M. (2019b) Phylogenetic placement of Lepraria cryptovouauxii sp. nov. (Lecanorales, Lecanoromycetes, Ascomycota) with notes on other Lepraria species from South America. MycoKeys 53: 1–22. https://doi.org/10.3897/mycokeys.53.33508
  17. Hibbett, D.S., Binder, M., Bischoff, J.F., Blackwell, M., Cannon, P.F., Eriksson, O.E., Huhndorf, S., James, T., Kirk, P.M., Lücking, R., Lumbsch, H.T., Lutzoni, F., Matheny, P.B., McLaughlin, D.J., Powell, M.J., Redhead, S., Schoch, C.L., Spatafora, J.W., Stalpers, J.A., Vilgalys, R., Aime, M.C., Aptroot, A., Bauer, R., Begerow, D., Benny, G.L., Castlebury, L.A., Crous, P.W., Dai, Y-C, Gams, W., Geiser, D.M., Griffith, G.W., Gueidan, C., Hawksworth, D.L., Hestmark, G., Hosaka, K., Humber, R.A., Hyde, K.D., Ironside, J.E., Kõljalg, U., Kurtzman, C.P., Larsson, K-H., Lichtwardt, R., Longcore, J., Miadlikowska, J., Miller, A., Moncalvo, J-M., Mozley-Standridge, S., Oberwinkler, F., Parmasto, E., Reeb, V., Rogers, J.D., Roux, C., Ryvarden, L., Sampaio, J.P., Schußler, A., Sugiyama, J., Thorn, R.G., Tibell, L., Untereiner, W.A., Walker, C., Wang, Z., Weir, A., Weiss, M., White, M.M., Winka, K., Yao, Y-J. & Zhang, N. (2007) A higher-level phylogenetic classification of the Fungi. Mycological Research 111: 509–547. https://doi.org/10.1016/j.mycres.2007.03.004
  18. Hodkinson, B.P., Moncada, B. & Lücking, R. (2014) Lepidostromatales, a new order of lichenized fungi (Basidiomycota, Agaricomycetes), with two new genera, Ertzia and Sulzbacheromyces, and one new species, Lepidostroma winklerianum. Fungal Diversity 64: 165–179. https://doi.org/10.1007/s13225-013-0267-0
  19. Kalyaanamoorthy, S., Minh, B., Wong, T., von Haeseler, A. & Jermiin, L.S. (2017) ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods 14: 587–589. https://doi.org/10.1038/nmeth.4285
  20. Kosecka, M., Kukwa, M., Jabłońska, A., Flakus, A., Rodriguez-Flakus, P., Ptach, Ł. & Guzow-Krzemińska, B. (2022) Phylogeny and ecology of Trebouxia photobionts from Bolivian lichens. Frontiers in Microbiology 13: 779784. https://doi.org/10.3389/fmicb.2022.779784
  21. Kukwa, M., Rodriguez-Flakus, P., Aptroot, A. & Flakus, A. (2023) Two new species of Astrothelium from Sud Yungas in Bolivia and the first discovery of vegetative propagules in the family Trypetheliaceae (lichen-forming Dothideomycetes, Ascomycota). MycoKeys 95: 83–100. https://doi.org/10.3897/mycokeys.95.98986
  22. Kubiak, D. & Kukwa, M. (2011) Chromatografia cienkowarstwowa (TLC) w lichenologii. – In: Dynowska, M. & Ejdys, E. (Eds.) Mikologia laboratoryjna. Przygotowanie materiału badawczego i diagnostyka. Wydawnictwo UWM w Olsztynie, Olsztyn, pp. 176–183.
  23. Lawrey, J.D., Lücking, R., Sipman, H.J.M., Chaves, J.L., Redhead, S.A., Bungartz, F., Sikaroodi, M. & Gillevet, P.M. (2009) High concentration of basidiolichens in a single family of agaricoid mushrooms. Mycological Research 113: 1154–1171. https://doi.org/10.1016/j.mycres.2009.07.016
  24. Lücking, R., Dal Forno, M., Lawrey, J.D., Bungartz, F., Holgado Rojas, M.E., Hernández, J.E.M., Marcelli, M.P., Moncada, B., Morales, E.A., Nelsen, M.P., Paz, E., Salcedo, L., Spielmann, A.A., Wilk, K., Will-Wolf, S. & Yánez, A. (2013a) Ten new species of lichenized Basidiomycota in the genera Dictyonema and Cora (Agaricales: Hygrophoraceae), with a key to all accepted genera and species in the Dictyonema clade. Phytotaxa 139: 1–38. https://doi.org/10.11646/phytotaxa.139.1.1
  25. Lücking, R., Dal-Forno, M., Wilk, K. & Lawrey, J.D. (2013b) Three new species of Dictyonema (lichenized Basidiomycota: Hygrophoraceae) from Bolivia. Acta Nova 6: 4–16.
  26. Lücking, R., Dal Forno, M., Sikaroodi, M., Gillevet, P.M., Bungartz, F., Moncada, B., Yánez, A., Chaves, J.L., Coca, L.F. & Lawrey, J.D. (2014a) A single macrolichen constitutes hundreds of unrecognized species. Proceedings of the National Academy of Sciences of the United States of America 111: 11091–11096. https://doi.org/10.1073/pnas.1403517111
  27. Lücking, R., Johnston, M.K., Aptroot, A., Kraichak, E., Lendemer, J.C., Boonpragob, K., Cáceres, M.E.S., Ertz, D., Ferraro, L.I., Jia, Z.F., Kalb, K., Mangold, A., Manoch, L., Mercado-Díaz, J.A., Moncada, B., Mongkolsuk, P., Papong, K., Parnmen, S., Pela´ez, R.N., Poengsungnoen, V., Rivas Plata, E., Saipunkaew, W., Sipman, H.J.M., Sutjaritturakan, J., Van den Broeck, D., Von Konrat, M., Weerakoon, G. & Lumbsch, H.T. (2014b) One hundred and seventy five new species of Graphidaceae: closing the gap or a drop in the bucket? Phytotaxa 189: 7–38. https://doi.org/10.11646/phytotaxa.189.1.4
  28. Lücking, R., Grall, A. & Thüs, H. (2014c) Typification of Thelephora pavonia Sw. and reinstatement of Cora ciferrii (Tomas.) comb nov.. Lichenologist 46: 825–828. https://doi.org/10.1017/S0024282914000401
  29. Lücking, R., Cáceres, M.E.S., Silva, N.G. & Alves, R.J.V. (2015) The genus Cora in the South Atlantic and the Mascarenes: Two novel taxa and inferred biogeographic relationships. Bryologist 118 (3): 293–303. https://doi.org/10.1639/0007-2745-118.3.293
  30. Lücking, R., Dal Forno, M., Moncada, B., Coca, L.F., Vargas-Mendoza, l.Y., Aptroot, A., Arias, L.J., Besal, B., Bungartz, F., Cabrera-Amaya, D.M., Cáceres, M.E.S., Chaves, J.L., Eliasaro, S., Gutiérrez, M.C., Hernández-M., J.E., Herrera-Campos, M.A., Holgado-Rojas, M.E., Jonitz, H., Kukwa, M., Lucheta, F., Madriñán, S., Marcelli, M.P., Martins, S.M.A., Mercado-Díaz, J.A., Molina, J.A., Morales, E.A., Nelson, P.R., Nugra, F., Ortega, F., Paredes, T., Patiño, A.L., Peláez-Pulido, R.N., Pérez-Pérez, R.E., Perlmutter, G.B., Rivas-Plata, M.E., Robayo, J., Rodríguez, C., Simijaca, D.F., Soto-Medina, E., Spielmann, A.A., Suárez-Corredor, A., Torres, J.M., Vargas, C.A., Yánez-Ayabaca, A., Weerakoon, G., Wilk, K., Celis-Pacheco, M., Diazgranados, M., Brokamp, G., Borsch, T., Gillevet, P.M., Sikaroodi, M. & Lawrey, J.D. (2017a) Turbo-taxonomy to assemble a megadiverse lichen genus: seventy new species of Cora (Basidiomycota: Agaricales: Hygrophoraceae), honouring David Leslie Hawksworth’s seventieth birthday. Fungal Diversity 84: 139–207. https://doi.org/10.1007/s13225-016-0374-9
  31. Lücking, R., Hodkinson, B.P. & Leavitt, S.D. (2017b) The 2016 classification of lichenized fungi in the Ascomycota and Basidiomycota – Approaching one thousand genera. The Bryologist 119 (4): 361–416. https://doi.org/10.1639/0007-2745-119.4.361
  32. Minh, B.Q., Nguyen, M.A. & von Haeseler, A. (2013) Ultrafast approximation for phylogenetic bootstrap. Molecular Biology and Evolution 30 (5): 1188–95. https://doi.org/10.1093/molbev/mst024
  33. Moncada, B., Pérez-Pérez, R.E. & Lücking, R. (2019) The lichenized genus Cora (Basidiomycota: Hygrophoraceae) in Mexico: high species richness, multiple colonization events, and high endemism. Plant and Fungal Systematics 64 (2): 393–411. https://doi.org/10.2478/pfs-2019-0026
  34. Nguyen, L.T., Schmidt, H.A., Von Haeseler, A. & Minh, B.Q. (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32: 268–274. https://doi.org/10.1093/molbev/msu300
  35. Oberwinkler, F. (1970) Die Gattungen der Basidiolichenen. Vorträge aus dem Gesamtgebiet der Botanik, N.F. 4: 139–169.
  36. Oberwinkler, F. (2012) Basidiolichens. In: Hock, B. (Ed.) Fungal Associations. The Mycota, 2nd edn, vol. IX. Springer, Berlin, Heidelberg, NY, pp. 341–362. https://doi.org/10.1007/978-3-642-30826-0_16
  37. Orange, A., James, P.W. & White, F.J. (2001) Microchemical methods for the identification of lichens. British Lichen Society, London, 101 pp.
  38. Oset, M. & Kukwa, M. (2012) Notes on Stereocaulon species from Bolivia. Mycotaxon 121: 447–453. https://doi.org/10.5248/121.447
  39. Ossowska, E.A., Moncada, B., Kukwa, M., Flakus, A., Rodriguez-Flakus, P., Olszewska, S. & Lücking, R. (2022) New species of Sticta (lichenised Ascomycota, lobarioid Peltigeraceae) from Bolivia suggest a high level of endemism in the Central Andes. MycoKeys 92: 131–160. https://doi.org/10.3897/mycokeys.92.89960
  40. Parmasto, E. (1978) The genus Dictyonema (‘Thelephorolichenes’). Nova Hedwigia 29: 99–144. https://doi.org/10.2478/pfs-2019-0026
  41. Redhead, S.A., Lutzoni, F., Moncalvo, J.M. & Vilgalys, R. (2002) Phylogeny of agarics: partial systematics solutions for core omphalinoid genera in the Agaricales (Euagarics). Mycotaxon 83: 19–57.
  42. Rodriguez-Flakus, P., Kukwa, M., Etayo, J., Lücking, R., Meneses, R.I., Rivas Plata, E., Stanton, D., Truong, C., Vargas, R. & Flakus, A. (2016) Preliminary catalogue of lichens and lichenicolous fungi from Bolivia. Available from: http://bio.botany.pl/lichens-bolivia/en,strona,catalogue,5.html (Version 1.5. 31 December 2016).
  43. Trifinopoulos, J., Nguyen, L.-T., von Haeseler, A. & Minh, B.Q. (2016) W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Research 44 (W1): W232–W235. https://doi.org/10.1093/nar/gkw256
  44. White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innnis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (eds.) PCR protocols: a guide to methods and applications. Academic Press, New York, pp. 315‒22. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
  45. Yánez, A., Dal-Forno, M., Bungartz, F., Lücking, R. & Lawrey, J.D. (2012) A first assessment of Galapagos basidiolichens. Fungal Diversity 52: 225–244. https://doi.org/10.1007/s13225-011-0133-x
  46. Zuniga, J.D. (2018) Global Genome Biodiversity Network. Global Genome Initiative, Smithsonian Institution, 10th St and Constitution Ave NW, Washington, DC 20012, USA. Available from: www.ggbn.org/ggbn_portal/ (accessed 29 October 2024)