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Type: Article
Published: 2024-09-03
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Molecular studies of Allographa effusosoredica sp. nov. (Graphidaceae) along with its Trentepohlia photobiont and a comprehensive checklist for Indian Allographa

Biodiversity and Palaeobiology (Fungi and Lichens) Gr., MACS Agharkar Research Institute, G. G. Agarkar Road, Pune, 411 004, Maharashtra, India. Faculty of Science, Savitribai Phule Pune University, Ganeshkhind, Pune, 411007, Maharashtra, India.
Biodiversity and Palaeobiology (Fungi and Lichens) Gr., MACS Agharkar Research Institute, G. G. Agarkar Road, Pune, 411 004, Maharashtra, India. Faculty of Science, Savitribai Phule Pune University, Ganeshkhind, Pune, 411007, Maharashtra, India.
Botanischer Garten und Botanisches Museum Berlin, Freie Universität Berlin, 14195 Berlin, Germany
Biodiversity and Palaeobiology (Fungi and Lichens) Gr., MACS Agharkar Research Institute, G. G. Agarkar Road, Pune, 411 004, Maharashtra, India
Biodiversity and Palaeobiology (Fungi and Lichens) Gr., MACS Agharkar Research Institute, G. G. Agarkar Road, Pune, 411 004, Maharashtra, India
Alga Graphidaceae New taxa Ostropales Phylogeny Symbiosis Fungi

Abstract

The current study describes a new species, Allographa effusosoredica, from the Western Ghats, India, along with its Trentepohlia photobiont. This study is based on morphological, chemical and molecular analyses using mtSSU, LSU and RPB2 sequence data for Allographa effusosoredica mycobiont and ITS sequence data for Trentepohlia photobiont. Allographa effusosoredica is characterized by a thin effuse thallus with diffuse soredia, 8-spored asci, transversely 7–11 septate ascospores, and norstictic acid chemistry. It is surprisingly similar to the widespread Graphis glaucescens, which differs in the absence of soredia and norstictic acid, but clusters phylogenetically within Allographa, allied to Allographa xanthospora, making the limits between Allographa and the distantly related genus Graphis more diffuse and raising doubts about the correct placement of G. glaucescens. The photobiont of the novel species is allied to Trentepohlia cf. arborum HZ-2017 isolate YN1047. This is the first species of Allographa sequenced from India.

References

  1. Acharius, E. (1814) Synopsis Methodica Lichenum. Munich, Bayerische Staatsbibliothek. 418 pp.
  2. Adanson, M. (1763) Familles des plantes. Vincent. https://doi.org/10.5962/bhl.title.271
  3. Adawadkar, B. & Makhija, U. (2007) New species and new records of Graphis from India with partially carbonized exciples and transseptate ascopores. Mycotaxon 99: 203–326.
  4. Ansil, P.A., Rajeshkumar, K.C., Sruthi, O.P., Gaikwad, S. & Sharma, B. (2023) Decoding the evolutionary association among lichen symbionts in Dyplolabia afzelii from the Western Ghats, India. Microbial Biosystems 8 (2): 17–24. https://doi.org/10.21608/mb.2023.241013.1084
  5. Aptroot, A. & S.C. Feuerstein (2020) New Graphidaceae from South and Central Brazil. Archive for Lichenology 16: 1–10.
  6. Aptroot, A. (2023) Lichens from the Roosevelt River Area in the Brazilian Amazon. Microbiology Research 14 (2): 755–786. https://doi.org/10.3390/microbiolres14020054
  7. Bajpai, R., Singh, C.P., Tripathi, O.P., Paul, R.R. & Upreti, D.K. (2022) Estimating lichen diversity of Arunachal Pradesh, India, along with new records for the country. Nelumbo 64 (2): 57–80. https://doi.org/10.20324/nelumbo/v64/2022/171964
  8. Behera, P.K., Nayaka, S., Upreti, D.K. & Chauhan, R.S. (2021) New distributional records to lichen biota of Assam, India. Indian Forester 147 (4): 400–404. https://doi.org/10.36808/if/2021/v147i4/152523
  9. Berchtold, F.G. von. & Presl, J.S. (1825) O. přirozenosti rostlin aneb roslinář, obsahugjcj popsánj a wyobrazenj rostlin podlé řádů přorpzených zpořádené, s zewrubným wlastnostj, užitečnosti a šlpd;owpsto, obzwlástě wywodin a zlodin, spůsobu wydobýwánj, poslednjch dobroty a porušenosti neygistěgšjho poznánj a skaušenj, též spůsobu užitecných sánzenj chowánj a rozmnožowánj. Wstanowený pro lékaře, hogiče, hospodáře. Umělce, remeslnjky a wychowatcle. 2 vols. J. Krause, Prague.
  10. Berger, S.A., Stamatakis, A. & Lücking, R. (2011) Morphology-based phylogenetic binning of the lichen genera Allographa and Graphis via molecular site weight calibration. Taxon 60: 1450–1457. https://doi.org/10.1002/tax.605020
  11. Burman, N.L. (1768) Nicolaii Laurentij Burmanni flora indica, cui accedit series zoophytorum indicorum, necnon prodromus florae capensis. apud C. Haek. 32 pp. https://doi.org/10.5962/bhl.title.60581
  12. Biju, H., Sabeena, A. & Nayaka, S. (2021) New Graphidaceae (lichenized fungi) records from the Western Ghats of Kerala state, India. Studies in Fungi 6 (1): 213–223. https://doi.org/10.5943/sif/6/1/14
  13. Biswas, S., Daimari, R., Islary, P., Nayaka, S., Joseph, S., Upreti, D.K. & Sarma, P. (2022) New additions to the lichen biota of Assam from Dhubri district, northeastern India. Journal of Threatened Taxa 14 (5): 21084–21090. https://doi.org/10.11609/jott.7606.14.5.21084-21090
  14. Boissier, H. (1895) Bulletin de l’Herbier Boissier 3 (7). Genève, Impr. Romet, 1026 pp.
  15. Chevallier, F.F. (1824) Histoire des Graphidées, accompagné d’un tableau analytique des genres. Ouvrage renfermant des observations anatomiques et physiologiques sur ces végétaux. pp. 1–86.
  16. Chitale, G., Makhija, U. & Sharma, B. (2009) New combinations and new species in the lichen genera Hemithecium and Pallidogramme.
  17. Mycotaxon 108: 83–92. https://doi.org/10.5248/108.83
  18. Chitale, G., Makhija, U. & Sharma, B. (2011) Additional species of Graphis from Maharashtra, India. Mycotaxon 115 (1): 469–480. https://doi.org/10.5248/115.469
  19. Daimari, R., Hazarika, N., Hoque, R.R, Nayaka, S. & Upreti, D.K. (2014) New records of epiphytic lichens from three districts of Assam, India. Indian Forester 140 (8): 807–811.
  20. Das, P., Joshi, S., Rout, J. & Upreti, D.K. (2012) Exploration of home gardens as important lichen conservation areas in Dargakona village of Southern Assam, Northeast India. Journal of Functional and Environmental Botany 2: 87–95. https://doi.org/10.5958/j.2231-1742.2.2.013
  21. de Lamarck, J.B.D.M. (1789) Encyclopédie méthodique: botanique. Vol. 3 (1). chez Panckoucke. Paris. pp. 211.
  22. Fée, A.L.A. (1825) Essai sur les cryptogames des écorces exotiques officinales. 180 pp.
  23. Geml, J., Kauff, F., Brochmann, C. & Taylor, D.L. (2010) Surviving climate changes: high genetic diversity and transoceanic gene flow in two arctic–alpine lichens, Flavocetraria cucullata and F. nivalis (Parmeliaceae, Ascomycota). Journal of Biogeography 37 (8): 1529–1542. https://doi.org/10.1111/j.1365-2699.2010.02287.x
  24. Gogoi, R., Devi, D., Nayaka, S. & Yasmin, F. (2022) A checklist of lichens of Assam, India. Asian Journal of Conservation Biology 11 (1): 49–65. https://doi.org/10.53562/ajcb.73760
  25. Gupta, P. & Sinha, G.P. (2018) Lichen flora of Assam. Bishen Singh Mahendra Pal Singh, India. 275 pp.
  26. Hametner, C., Stocker‐Wörgötter, E., Rindi, F. & Grube, M. (2014) Phylogenetic position and morphology of lichenized Trentepohliales (Ulvophyceae, Chlorophyta) from selected species of Graphidaceae. Phycological Research 62 (3): 170–186. https://doi.org/10.1111/pre.12055
  27. Kalb, J., Lücking, R. & Kalb, K. (2018) The lichen genera Allographa and Graphis (Ascomycota: Ostropales, Graphidaceae) in Thailand—eleven new species, forty-seven new records and a key to all one hundred and fifteen species so far recorded for the country. Phytotaxa 377 (1): 1–83. https://doi.org/10.11646/phytotaxa.377.1.1
  28. Kraichak, E., Divakar, P.K., Crespo, A., Leavitt, S.D., Nelsen, M.P., Lücking, R. & Lumbsch, H.T. (2015a) A tale of two hyper-diversities: diversification dynamics of the two largest families of lichenized fungi. Scientific Reports 5 (1): 10028. https://doi.org/10.1038/srep10028
  29. Kraichak, E., Lücking, R., Aptroot, A., Beck, A., Dornes, P., John, V., Lendemer, J.C., Nelsen, M.P., Neuwirth, G., Nutakki, A. & Parnmen, S. (2015b) Hidden diversity in the morphologically variable script lichen (Graphis scripta) complex (Ascomycota, Ostropales, Graphidaceae). Organisms Diversity & Evolution 15: 447–458. https://doi.org/10.1007/s13127-015-0219-5
  30. Kulkarni, C.R. (1977) A new species of Graphis from Western Ghats, Southwestern India. Biovigyanam 3: 115–116.
  31. Lamarck, J.B. (1783) Encyclopédie méthodique. Botanique t1 Paris, Liège, Panckoucke; Plomteux, 801 pp. https://doi.org/10.5962/bhl.title.824
  32. Larsson, A. (2014) AliView: a fast and lightweight alignment viewer and editor for large datasets. Bioinformatics 30 (22): 3276–3278. https://doi.org/10.1093/bioinformatics/btu531
  33. Linnaeus, C. von (1753) Species plantarum vol. 1, 2. Holmiae, Impensis Laurentii Salvii, pp. 560–1189. https://doi.org/10.5962/bhl.title.669
  34. Liu, Y.H. (2000) Proceedings of the International Symposium on the Family Magnoliaceae, May 18–22, 1998, Guangzhou, China.
  35. Logesh, A.R., Chinlampianga, M., Shukla, A.C. & Upreti, D.K. (2017) Studies on lichens of Mizoram, northeast India. Proceedings of the National Academy of Sciences, India Section B: Biological Sciences 87: 445­–457. https://doi.org/10.1007/s40011-015-0592-z
  36. Lücking, R. (2009) The taxonomy of the genus Graphis sensu Staiger (Ascomycota: Ostropales: Graphidaceae). The Lichenologist 41 (4): 319–362. https://doi.org/10.1017/S0024282909008524
  37. Lücking, R. & Kalb, K. (2018) Formal instatement of Allographa (Graphidaceae): how to deal with a hyperdiverse genus complex with cryptic differentiation and paucity of molecular data. Herzogia 31 (1): 535–561. https://doi.org/10.13158/heia.31.1.2018.535
  38. Lücking, R., Archer, A.W. & Aptroot, A. (2009) A world-wide key to the genus Graphis (Ostropales: Graphidaceae). The Lichenologist 41 (4): 363–452. https://doi.org/10.1017/S0024282909008305
  39. Lücking, R., Chaves, J.L., Sipman, H.J., Umaña, L. & Aptroot, A., (2008) A first assessment of the Ticolichen Biodiversity Inventory in Costa Rica: the genus Graphis, with notes on the genus Hemithecium (Ascomycota: Ostropales: Graphidaceae). Fieldiana Botany (46): 1–126. https://doi.org/10.3158/0015-0746(2008)46[1:AFAOTT]2.0.CO;2
  40. Lücking, R., Tehler, A., Bungartz, F., Rivas Plata, E. & Lumbsch, H.T. (2013) Journey from the West: did tropical Graphidaceae (lichenized Ascomycota: Ostropales) evolve from a saxicolous ancestor along the American Pacific coast?. American Journal of Botany 100 (5): 844–856. https://doi.org/10.3732/ajb.1200548
  41. Makhija, U. & Bharati, A. (2005) Some new species of Graphis (Lichenised Ascomycota) from the Andaman and Nicobar Islands of India. Mycotaxon 91: 369–379.
  42. Makhija, U., Dube, A., Adawadkar, B. & Chitale, G. (2006) Some species of lichen genera Dyplolabia and Graphis from Maharashtra, India. Geophytology 36 (1 & 2): 61–68.
  43. Mangold, A., Martín, M.P., Lücking, R. & Lumbsch, H.T. (2008) Molecular phylogeny suggests synonymy of Thelotremataceae within Graphidaceae (Ascomycota: Ostropales). Taxon 57 (2): 476–486.
  44. Martius, C.F.P. von (1817) Flora cryptogamica erlangensis sistens vegetabilia e classe ultima Linn. in agro erlangesi hucusque detecta. Norimbergae [Nürnberg]. sumptibus J. L. Schrag. 512 pp.
  45. Massalongo, A.B. (1854) Neagenea lichenum. pp. 1–10. https://doi.org/10.5962/bhl.title.120524
  46. Medeiros, I.D. & Lutzoni, F. (2022) Contribution to a modern treatment of Graphidaceae biodiversity in South Africa: genera of tribe Graphideae with hyaline ascospores. The Lichenologist 54 (5): 253–270.
  47. Millardet, M.A. (1870) De la germination des zygospores dans les genres Closterium et Staurastrum et sur un genre nouveau d’algues chlorosporées. Mémoires de la Société des Sciences Naturelles de Strasbourg 6: 37–51.
  48. Morgulis, A., Coulouris, G., Raytselis, Y., Madden, T.L., Agarwala, R. & Schäffer, A.A. (2008) Database indexing for production MegaBLAST searches. Bioinformatics 24 (16): 1757–1764. https://doi.org/10.1093/bioinformatics/btn322
  49. Muggia, L., Pérez-Ortega, S., Kopun, T., Zellnig, G. & Grube, M. (2014) Photobiont selectivity leads to ecological tolerance and evolutionary divergence in a polymorphic complex of lichenized fungi. Annals of Botany 114 (3): 463–475. https://doi.org/10.1093/aob/mcu146
  50. Müller Arg., J. (1885) Flora oder Botanische Zeitung. Regensburg 70. Die Gesellschaft, 645 pp.
  51. Nagarkar, M.B. & Patwardhan, P.G. (1982) Notes on some lichens from North East India IV: genus Graphis. Biovigyanam 8: 125–131.
  52. Nayaka, S., Mishra, G.K. & Upreti, D.K. (2019) Floristic diversity status assessment of lichens from Dima Hasao district, Northeast, India. International Journal of Plant and Environment 5 (02): 84–91. https://doi.org/10.18811/ijpen.v5i02.3
  53. Nelsen, M.P. & Gargas, A. (2009) Symbiont flexibility in Thamnolia vermicularis (Pertusariales: Icmadophilaceae). The Bryologist 112 (2): 404–417. https://doi.org/10.1639/0007-2745-112.2.404
  54. Nylander, J.A.A. (2004) MrModeltest 2.3. Program distributed by the author. Evolutionary Biology Centre, Uppsala University. Available from: http://www.abc.se/~nylander/ (Accessed 29 March 2024)
  55. Orange, A., James, P.W. & White, F.J. (2001) Microchemical methods for the identification of lichens. British Lichen Society, London, 101 pp.
  56. Pierre, L. (1880–1907) Flore forestière de la Cochinchine vol. 1. Paris, O. Doin, 406 pp. https://doi.org/10.5962/bhl.title.61558
  57. Patwardhan, P.G. & Kulkarni, C.R. (1976) Some additions to the lichen flora of India. IV. Graphis and Graphina (family Graphidaceae). Biovigyanam 2: 123–132.
  58. Plata, E.R., Hernández M, J.E., Lücking, R., Staiger, B., Kalb, K. & Cáceres, M.E. (2011) Graphis is two genera: a remarkable case of parallel evolution in lichenized Ascomycota. Taxon 60 (1): 99–107. https://doi.org/10.1002/tax.601009
  59. Prakash, V.N., Pranav, K., Christy, A., Joseph, S., Sreejith, K.A., Sreekumar, V.B. & Jincy, T.S. (2024) Lichens of the Sholayar 10 ha Permanent Plot, Western Ghats with Allographa cinerea as New to India. Biology Bulletin 31: 1–6. https://doi.org/10.1134/S1062359023606225
  60. Pushpi, S. & Singh, K.P. (2016) Three new records of lichens in the family graphidoid Graphidaceae for India. Indian Journal of Forestry 39 (2): 147–149. https://doi.org/10.54207/bsmps1000-2016-2682FE
  61. Rambaut, A. (2014) FigTree. Available from: http://tree.bio.ed.ac.uk/software/figtree/ (accessed 22 July 2023)
  62. Ronquist, F., Teslenko, M., Van Der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61 (3): 539–542. https://doi.org/10.1093/sysbio/sys029
  63. Sharma, B.O., Khadilkar, P. & Makhija, U. (2012) New species and new combinations in the lichen genera Fissurina and Hemithecium from India. The Lichenologist 44 (3): 339–362. https://doi.org/10.1017/S0024282911000752
  64. Singh, K.P. & Sinha, G.P. (2010) Indian Lichens: An Annotated Checklist. Botanical Survey of Ind. India, 571 pp.
  65. Singh, K.P. & Swarnalatha, G. (2011) A note on Graphidaceous lichens from Arunachal Pradesh, India. Indian Journal of Forestry 34 (3): 353–360. https://doi.org/10.54207/bsmps1000-2011-5V923J
  66. Singh, K.P., Singh, P. & Sinha, G.P. (2018) Lichen diversity in the Eastern Himalaya biodiversity hotspot region, India. Cryptogam Biodiversity and Assessment Spl. Vol: 71–114. https://doi.org/10.21756/cab.esp9
  67. Singh, P., Singh, K. & Bhatt, A. (2015) Diversity and distribution of microlichens in the state of Arunachal Pradesh, Eastern Himalaya, India. Check list 11 (6): 1–20. https://doi.org/10.15560/11.6.1807
  68. Staiger, B. (2002) Die Flechtenfamilie Graphidaceae. Bibliotheca lichenologica, vol. 85. J. Cramer, Berlin, 526 pp.
  69. Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22 (21): 2688–2690. https://doi.org/10.1093/bioinformatics/btl446
  70. Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology 57: 758–771. https://doi.org/10.1080/10635150802429642
  71. Tamura, K., Stecher, G. & Kumar, S. (2021) MEGA11: molecular evolutionary genetics analysis version 11. Molecular Biology and Evolution 38 (7): 3022–3027. https://doi.org/10.1093/molbev/msab120
  72. Thompson, R.H. & Wujek, D.E. (1992) Printzina gen. nov. (Trentepohliaceae), including a description of a new species. Journal of Phycology 28: 232–237. https://doi.org/10.1111/j.0022-3646.1992.00232.x
  73. Teodoro Caruel (1889) Nuovo Giornale botanico italiano, e bullettino della Societá botanica italiana. Fascicolo III. Firenze, pp. 353–488.
  74. Trifinopoulos, J., Nguyen, L.T., von Haeseler, A. & Minh, B.Q. (2016) W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Research 44 (W1): W232–W235. https://doi.org/10.1093/nar/gkw256
  75. Upreti, D.K., Dubey, U. & Nayaka, S. (2011) A new isidiate species of Hemithecium Trevis. (Ascomycota, Graphidaceae) from India. The Lichenologist 43 (5): 483–485. https://doi.org/10.1017/S0024282911000430
  76. Vainio, E.A. (1899) Lichenes novi rarioresque. Ser. III. Hedwigia 38: 253–259.
  77. Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172 (8): 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
  78. Weerakoon, G., Aptroot, A., Luecking, R., Arachchige, O. & Wijesundara, S. (2019) Graphis and Allographa (lichenized Ascomycota: Graphidaceae) in Sri Lanka, with six new species and a biogeographical comparison investigating a potential signature of the ‘biotic ferry’ species interchange. The Lichenologist 51 (6): 515–559. https://doi.org/10.1017/S0024282919000392
  79. Yahr, R., Vilgalys, R. & Depriest, P.T. (2004) Strong fungal specificity and selectivity for httpl symbionts in Florida scrub Cladonia lichens. Molecular Ecology 13 (11): 3367–3378. https://doi.org/10.1111/j.1365-294X.2004.02350.x
  80. Zhu, H., Hu, Z. & Liu, G. (2017) Morphology and molecular phylogeny of Trentepohliales (Chlorophyta) from China. European Journal of Phycology 52 (3): 330–341. https://doi.org/10.1080/09670262.2017.1309574
  81. Zoller, S., Scheidegger, C. & Sperisen, C. (1999) PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes. The Lichenologist 31 (5): 511–516. https://doi.org/10.1006/lich.1999.0220