Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2024-03-18
Page range: 125-137
Abstract views: 15
PDF downloaded: 1

Pseudoconiocessia xishuangbannaensis gen. et sp. nov. in Coniocessiaceae, Xylariales from Coffea liberica in China

Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, P.R. China. School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.
Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, P.R. China.
Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, P.R. China.
Department of Botany and Microbiology, College of Science, King Saud University, P.O. 2455, Riyadh, 1451, Saudi Arabia.
Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, P.R. China.
School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand. Kyung Hee University, 26 Kyungheedae-ro, Dongdaemun-gu, Seoul 02447, South Korea.
1 new genus 1 new species Liberian coffee multi-gene phylogeny taxonomy Fungi

Abstract

During a survey of saprobic fungi on coffee samples in Yunnan Province, China, in 2020 and 2022, fungal fruiting bodies on decaying Liberian coffee twigs were collected and isolated. Maximum likelihood and Bayesian analyses of combined ITS, LSU, and RPB2 genes showed that the two isolated fungal strains belonged to a distinct species in Coniocessiaceae and were well separated from closely related genera with 73% ML and 0.92 PP statistical support. Morphologically, this distinct species can be differentiated from other genera in Coniocessiaceae by aseptate hamathecium, 4–8-spored asci with a flat apical ring, and fusiform ascospores, conical at the lower end. Based on morphology and phylogenetic analyses, the two fungal strains are described as a distinct new genus Pseudoconiocessia, within Coniocessiaceae. Pseudoconiocessia is introduced here with Pseudoconiocessia xishuangbannaensis as the type species.

References

  1. Asgari, B. & Zare, R. (2011) A contribution to the taxonomy of the genus Coniocessia (Xylariales). Mycological progress 10: 189–206. https://doi.org/10.1007/s11557-010-0688-z
  2. Berkeley, M.J. (1874) Notices of North American fungi. Grevillea 3 (25): 1–17.
  3. Capella-Gutiérrez, S., Silla-Martínez, J.M. & Gabaldón, T. (2009) TrimAl: A tool for automated alignment trimming in large-scale phylo-genetic analyses. Bioinformatics 25: 1972–1973. https://doi.org/10.1093/bioinformatics/btp348
  4. Chen, Y., Su, P., Hyde, K. & Maharachchikumbura, S. (2023) Phylogenomics and diversification of Sordariomycetes. Mycosphere 14 (1): 414–451. https://doi.org/10.5943/mycosphere/14/1/5
  5. Davis, A.P., Govaerts, R., Bridson, D.M. & Stoffelen, P. (2006) An annotated taxonomic conspectus of the genus Coffea (Rubiaceae). Botanical Journal of the Linnean Society 152: 465–512. https://doi.org/10.1111/j.1095-8339.2006.00584.x
  6. Davis, A.P., Kiwuka, C., Faruk, A., Walubiri, M.J. & Kalema, J. (2022) The re-emergence of Liberica coffee as a major crop plant. Nature Plants 8 (12): 1322–1328. https://doi.org/10.1038/s41477-022-01309-5
  7. Delacroix, G. (1904) Sur quelques champiguons parasites sur les Caféiers. Bulletin de la Société Mycologique de France 20: 142–151
  8. Dissanayake, A.J., Bhunjun, C.S., Maharachchikumbura, S.S.N. & Liu, J.K. (2020) Applied aspects of methods to infer phylogenetic relationships amongst fungi. Mycosphere 11 (1): 2652–2676. https://doi.org/10.5943/mycosphere/11/1/18
  9. Eriksson, O.E. & Winka, K. (1997) Supraordinal taxa of Ascomycota. Myconet 1: 1–16.
  10. Ferrari, R., Gautier, V. & Silar, P. (2021) Lignin degradation by ascomycetes. Advances in botanical research 99: 77–113. https://doi.org/10.1016/bs.abr.2021.05.006
  11. Glez-Peña, D., Gómez-Blanco, D., Reboiro-Jato, M., Fdez-Riverola, F. & Posada, D. (2010) ALTER: program-oriented conversion of DNA and protein alignments. Nucleic Acids Research 38: 14–18. https://doi.org/10.1093/nar/gkq321
  12. Hongsanan, S., Maharachchikumbura, S.S.N., Hyde, K.D., Samarakoon, M.C., Jeewon, R., Zhao, Q., Al-Sadi, A.M. & Bahkali, A.H. (2017) An updated phylogeny of Sordariomycetes based on phylogenetic and molecular clock evidence. Fungal Diversity 84: 25–41. https://doi.org/10.1007/s13225-017-0384-2
  13. Herawati, D., Loisanjaya, M.O., Kamal, R.H., Adawiyah, D.R. & Andarwulan, N. (2022) Profile of bioactive compounds, aromas, and cup quality of Excelsa coffee (Coffea liberica var. dewevrei) prepared from diverse postharvest processes. International Journal of Food Science 2022. https://doi.org/10.1155/2022/2365603
  14. Hyde, K.D., Norphanphoun, C., Maharachchikumbura, S.S.N., Bhat, D.J., Jones, E.B.G., Bundhun, D., Chen, Y.J., Bao, D.F., Boonmee, S., Calabon, M.S., Chaiwan, N., Chethana, K.W.T., Dai, D.Q., Dayarathne, M.C., Devadatha, B., Dissanayake, A.J., Dissanayake, L.S., Doilom, M., Dong, W., Fan, X.L., Goonasekara, I.D., Hongsanan, S., Huang, S.K., Jayawardena, R.S., Jeewon, R., Karunarathna, A., Konta, S., Kumar, V., Lin, C.G., Liu, J.K., Liu, N.G., Luangsa-ard, J., Lumyong, S., Luo, Z.L., Marasinghe, D.S., McKenzie, E.H.C., Niego, A.G.T., Niranjan, M., Perera, R.H., Phukhamsakda, C., Rathnayaka, A.R., Samarakoon, M.C., Samarakoon, S.M.B.C., Sarma, V.V., Senanayake, I.C., Shang, Q.J., Stadler, M., Tibpromma, S., Wanasinghe, D.N., Wei, D.P., Wijayawardene, N.N., Xiao, Y.P., Yang, J., Zeng, X.Y., Zhang, S.N. & Xiang, M.M. (2020) Refined families of Sordariomycetes. Mycosphere 11: 305–1059. https://doi.org/10.5943/mycosphere/11/1/7
  15. Hyde, K.D., Jones, E.B.G., Liu, J.K., Ariyawansa, H.A., Boehm, E., Boonmee, S., Braun, U., Chomnunti, P., Crous, P.W., Dai, D.Q., Diederich, P., Dissanayake, A., Doilom, M., Doveri, F., Hongsanan, S., Jayawardena, R., Lawrey, J.D., Li, Y.M., Liu, Y.X., Lucking, R., Monkai, J., Muggia, L., Nelsen, M.P., Pang, K.L., Phookamsak, R,. Senanayake, I.C., Shearer, C.A., Suetrong, S., Tanaka, K., Thambugala, K.M., Wijayawardene, N.N., Wikee, S., Wu, H.X., Zhang, Y., Aguirrehudson, B., Alias, S.A., Aptroot, A., Bahkali, A., Bezerra, J.L., Bhat, D.J., Camporesi, E., Chukeatirote, E., Gueidan, C., Hawksworth, D.L., Hirayama, K., Hoog, S.D., Kang, J.C., Knudsen, K., Li, W.J., Li, X.H., Liu, Z.Y., Mapook, A., Mckenzie, E.H.C., Miller, A.N., Mortimer, P.E., Phillips, A.J.L., Raja, H.A., Scheuer, C., Schumm, F., Taylor, J.E., Tian, Q., Tibpromma, S., Wanasinghe, D.N., Wang, Y., Xu, J.C., Yacharoen, S., Yan, J.Y. & Zhang, M. (2013) Families of Dothideomycetes. Fungal Diversity 63: 1–313. https://doi.org/10.1007/s13225-013-0263-4
  16. Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98.
  17. Hernãndez-Restrepo, M., Decock, C.A., Costa, M.M. & Crous, P.W. (2022) Phylogeny and taxonomy of Circinotrichum, Gyrothrix, Vermiculariopsiella and other setose hyphomycetes. Persoonia-Molecular Phylogeny and Evolution of Fungi 49 (1): 99–135. https://doi.org/10.3767/persoonia.2022.49.03
  18. Index Fungorum (2024) Available from: http://www.indexfungorum.org (accessed: 7 March 2024).
  19. Jaklitsch, W.M., Fournier, J., Rogers, J.D. & Voglmayr, H. (2014) Phylogenetic and taxonomic revision of Lopadostoma. Persoonia-Molecular Phylogeny and Evolution of Fungi 32 (1): 52–82. https://doi.org/10.3767/003158514X679272
  20. Jayasiri, S.C., Hyde, K.D., Ariyawansa, H.A., Bhat, J., Buyck, B., Cai, L., Dai, Y.C., Abd-Elsalam, K.A., Ertz, D., Hidayat, I., Jeewon, R., Jones, E.B.G., Bahkali, A.H., Karunarathna, S.C., Liu, J.K., Luangsa-ard, J.J., Lumbsch, H.T., Maharachchikumbura, S.S.N., McKenzie, E.H.C., Moncalvo, J.-M., Ghobad-Nejhad, M., Nilsson, H., Pang, K.L., Pereira, O.L., Phillips, A.J.L., Raspé, O., Rollins, A.W., Romero, A.I., Etayo, J., Selçuk, F., Stephenson, S.L., Suetrong, S., Taylor, J.E., Tsui, C.K.M., Vizzini, A., Abdel-Wahab, M.A., Wen, T.C., Boonmee, S., Dai, D.Q., Daranagama, D.A., Dissanayake, A.J., Ekanayaka, A.H., Fryar, S.C., Hongsanan, S., Jayawardena, R.S., Li, W.J., Perera, R.H., Phookamsak, R., de Silva, N.I., Thambugala, K.M., Tian, Q., Wijayawardene, N.N., Zhao, R.L., Zhao, Q., Kang, J.C. & Promputtha, I. (2015) The Faces of Fungi database: fungal names linked with morphology, phylogenyand human impacts. Fungal Diversity 74: 3–18. https://doi.org/10.1007/s13225-015-0351-8
  21. Kirk, P.M., Cannon, P.F., Minter, D.W. & Stalpers, J.A. (2008) Dictionary of the fungi, 10th edn. CABI, Wallingford.
  22. Kartika, E. & Duaja, M.D. (2019) Diversity of Arbuscular mycorrhizal fungi from Liberica Tungkal Jambi Coffee Plant Rhizosphere on Peatland. In: IOP Conference Series: Earth and Environmental Science. Vol. 391, No. 1. IOP Publishing, pp. 012058. https://doi.org/10.1088/1755-1315/391/1/012058
  23. Katoh, K. & Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772–780. https://doi.org/10.1093/molbev/mst010
  24. Konta, S., Hyde, K.D., Eungwanichayapant, P.D., Karunarathna, S.C., Samarakoon, M.C., Xu, J.C., Dauner, L.A.P., Aluthwattha, S.T., Lumyong, S. & Tibpromma, S. (2021) Multigene phylogeny reveals Haploanthostomella elaeidis gen. et sp. nov. and familial replacement of Endocalyx (Xylariales, Sordariomycetes, Ascomycota). Life 11 (6): 486. https://doi.org/10.3390/life11060486
  25. Kaewchai, S., Soytong, K. & Hyde, K.D. (2009) Mycofungicides and fungal biofertilizers. Fungal Diversity 38: 25–50.
  26. Lu, L., Karunarathna, S.C., Dai, D.Q., Xiong, Y.R., Suwannarach, N., Stephenson, S.L., Elgorban, A.M., Al-Rejaie, S., Jayawardena, R.S. & Tibpromma, S. (2022) Description of four novel species in Pleosporales associated with Coffee in Yunnan, China. Journal of Fungi 8 (10): 1113. https://doi.org/10.3390/jof8101113
  27. Lu, B.S., Hyde, K.D. (2000) A world monograph of Anthostomella. Fungal Diversity Press, Fungal Diversity Research Series.
  28. Luo, Z.L., Hyde, K.D., Liu, J.K.J., Maharachchikumbura, S.S., Jeewon, R., Bao, D.F., Bhat, D.J., Lin, C.G., Li, W.L., Yang, J., Liu, N.G., Lu, Y.Z., Jayawardena, R.S., Li, J.F. & Su, H.Y. (2019) Freshwater Sordariomycetes. Fungal diversity 99: 451–660. https://doi.org/10.1007/s13225-019-00438-1
  29. Liu, Y.J., Whelen, S. & Hall, B.D. (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Molecular Biology and Evolution 16 (12): 1799–1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092
  30. Lee, K.W.T. (2023) Liberica Coffee Development and Refinement Project in Sarawak Malaysia. Proceeding 89: 1–15. https://doi.org/10.3390/ICC2023-14849
  31. Maharachchikumbura, S.S.N., Hyde, K.D., Jones, E.G., McKenzie, E., Bhat, J.D., Dayarathne, M.C., Huang, S.K., Norphanphoun, C., Senanayake, I.C. & Perera, R.H. (2016) Families of sordariomycetes. Fungal Diversity 79: 1–317. https://doi.org/10.1007/s13225-016-0369-6
  32. Ma, X., Chomnunti, P., Doilom, M., Daranagama, D.A. & Kang, J.C. (2022) Multigene phylogeny reveals endophytic Xylariales novelties from Dendrobium species from Southwestern China and Northern Thailand. Journal of Fungi 8 (3): 248. https://doi.org/10.3390/jof8030248
  33. Mannino, G., Kunz, R. & Maffei, M.E. (2023) Discrimination of Green Coffee (Coffea arabica and Coffea canephora) of different geographical origin based on antioxidant activity, high-throughput metabolomics, and DNA RFLP Fingerprinting. Antioxidants 12 (5): 1135. https://doi.org/10.3390/antiox12051135
  34. Mugo, H.M. (2010) Integration of Soil Fertilizers, Selective Insecticides and Predacious Mites for the Management of Cofee Insect Pests in Kenya. Doctoral dissertation, University of Nairobi, Kenya.
  35. Nannfeldt, J.A. (1932) Studien uber die Morphologie und Systematik der nicht-lichenisierten inoperculaten Discomyceten. Nova Acta Regiae Societatis Scientiarum Upsaliensis 8: 1–368.
  36. N’diaye, A., Poncet, V., Louarn, J., Hamon, S. & Noirot, M. (2005) Genetic differentiation between Coffea liberica var. liberica and C. liberica var. dewevrei and comparison with C. canephora. Plant Systematics and Evolution 253: 95–104. https://doi.org/10.1007/s00606-005-0300-1
  37. Rappaz, F. (1995) Anthostomella and related xylariaceous fungi on hard wood from Europe and North America. Mycologia Helvetica 7: 99.
  38. Saccas, A.M. (1981) Étude de la Flore Cryptogamique des Caféirs en Afrique Centrale. 522 pp.
  39. Sun, Y.R., Liu, N.G., Samarakoon, M.C., Jayawardena, R.S., Hyde, K.D. & Wang, Y. (2021) Morphology and phylogeny reveal Vamsapriyaceae fam. nov. (Xylariales, Sordariomycetes) with two novel Vamsapriya species. Journal of Fungi 7 (11): 891. https://doi.org/10.3390/jof7110891
  40. Samarakoon, M.C., Hyde, K.D., Maharachchikumbura, S.S., Stadler, M., Gareth Jones, E.B., Promputtha, I., Suwannarach, N., Camporesi, E., Bulgakov, T.S. & Liu, J.K. (2022) Taxonomy, phylogeny, molecular dating and ancestral state reconstruction of Xylariomycetidae (Sordariomycetes). Fungal Diversity 112 (1): 1–88. https://doi.org/10.1007/s13225-021-00495-5
  41. Samarakoon, M.C., Hyde, K.D., Promputtha, I., Hongsanan, S., Ariyawansa, H.A., Maharachchikumbura, S.S.N., Daranagama, D.A., Stadler, M. & Mapook, A. (2016) Evolution of Xylariomycetidae (Ascomycota: Sordariomycetes). Mycosphere 7 (11): 1746–1761. https://doi.org/10.5943/mycosphere/7/11/9
  42. Senanayake, I.C., Rathnayaka, A.R., Marasinghe, D.S., Calabon, M.S., Gentekaki, E., Lee, H.B., Hurdeal, V.G., Pem, D., Dissanayake, L.S., Wijesinghe, S.N. & Bundhun, D. (2020) Morphological approaches in studying fungi: Collection, examination, isolation, sporulation and preservation. Mycosphere 11: 2678–2754. https://doi.org/10.5943/mycosphere/11/1/20
  43. Senanayake, I.C., Maharachchikumbura, S.S., Hyde, K.D., Bhat, J.D., Jones, E.G., McKenzie, E.H., Dai, D.Q., Daranagama, D.A., Dayarathne, M.C., Goonasekara, I.D. & Konta, S. (2015) Towards unraveling relationships in Xylariomycetidae (Sordariomycetes). Fungal Diversity 73: 73–144. https://doi.org/10.1007/s13225-015-0340-y
  44. Vandegrift, R. (2021) Xylariales (Sordariomycetes, Ascomycota) of the Boston Harbor Islands. Northeastern Naturalist 25 (sp9): 150–199. https://doi.org/10.1656/045.025.s907
  45. Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
  46. White, T.J., Bruns, T., Lee, S.J.W.T. & Taylor, J.L. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: a Guide to Methods and Applications 18: 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
  47. Wijayawardene, N.N., Hyde, K.D., Dai, D.Q., Sánchez-García, M., Goto, B.T. & Magurno, F. (2022) Outline of Fungi and fungus-like taxa–2021. Mycosphere 13 (1): 53–453. https://doi.org/10.5943/mycosphere/13/1/2
  48. Wahibah, N.N., Putri, R.P., Muflikhah, L. & Martina, A. (2023) Analysis of resistance to fungal pathogen Hemileia Vastatrix of Liberica coffee based on functional marker. International Journal of Phytopathology 12 (1): 1–7. https://doi.org/10.33687/phytopath.012.01.4371
  49. Wanasinghe, D.N., Phukhamsakda, C., Hyde, K.D., Jeewon, R., Lee, H.B., Jones, E.B.G., Tibpromma, S., Tennakoon, D.S., Dissanayake, A.J., Jayasiri, S.C., Gafforov, Y., Camporesi, E., Bulgakov, T.S., Ekanayake, A.H., Perera, R.H., Samarakoon, M.C., Goonasekara, I.D., Mapook, A., Li, W.J., Senanayake, I.C., Li, J., Norphanphoun, C., Doilom, M., Bahkali, A.H., Xu, J.C., Mortimer, P.E., Tibell, L., Tibell, S. & Karunarathna, S.C. (2018) Fungal diversity notes 709–838: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on Rosaceae. Fungal Diversity 89: 1–236. https://doi.org/10.1007/s13225-018-0395-7