Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2024-02-07
Page range: 126-138
Abstract views: 4
PDF downloaded: 6

Additions to Crassiparies and Neobrevicollum (Neohendersoniaceae, Pleosporales) associated with woody hosts in Southwest China

School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 611731, China, Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand
School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 611731, China
School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 611731, China, Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand
Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand
School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 611731, China
1 new speceis Dothideomycetes multi-gene phylogeny taxonomy Fungi

Abstract

During an investigation of ascomycetous fungi from decaying wood in southwest China, seven taxa with sexual morphs were found to be saprobic from terrestrial habitats. These taxa were identified based on morphology, phylogeny, and cultural characteristics. The morphology and phylogenetic evidence placed these new fungal collections in Neohendersoniaceae, distributing in the genera Crassiparies and Neobrevicollum. The phylogenetic analyses of a combined ITS, LSU, SSU, RPB2, and TEF1-α sequence dataset also confirmed their taxonomic placement. A new species, Neobrevicollum biancaeae is introduced to accommodate the two taxa, which have thin-walled ascomata without ostiole, and smaller asci and ascospores compared to the type species, N. oleae. The other five samples were identified as Crassiparies quadrisporus and N. oleae representing three and two taxa, respectively. The identification and establishment of these species are justified based on morpho-molecular analyses. In addition, the new host records of C. quadrisporus and N. oleae were reported. Detailed descriptions and illustrations are provided for collected taxa. This study contributed to the microfungal diversity in Southwest China.

References

  1. Bánki, O., Roskov, Y., Döring, M., Ower, G., Vandepitte, L., Hobern, D., Remsen, D., Schalk, P., DeWalt, R.E. & Keping, M. (2022) Catalogue of Life Checklist (Version 2022-01-14).
  2. Capella-Gutiérrez, S., Silla-Martínez, J.M. & Gabaldón, T. (2009) trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25 (15): 1972–1973. https://doi.org/10.1093/bioinformatics/btp348
  3. Crous, P.W., Schumacher, R.K., Akulov, A., Thangavel, R., Hernández-Restrepo, M., Carnegie, A.J., Cheewangkoon, R., Wingfield, M.J., Summerell, B.A., Quaedvlieg, W., Coutinho, T.A., Roux, J., Wood, A.R., Giraldo, A. & Groenewald, J.Z. (2019) New and Interesting Fungi. 2. Fungal Systematics and Evolution 3 (1): 57–134. https://doi.org/10.3114/fuse.2019.03.06
  4. Dayarathne, M., Jones, E., Maharachchikumbura, S., Devadatha, B., Sarma, V., Khongphinitbunjong, K., Chomnunti, P. & Hyde, K.D. (2020) Morpho-molecular characterization of microfungi associated with marine based habitats. Mycosphere 11 (1): 1–188. https://doi.org/10.5943/mycosphere/11/1/1
  5. Danti, R., Sieber, T.N. & Sanguineti, G. (2002) Endophytic mycobiota in bark of European beech (Fagus sylvatica) in the Apennines. Mycological Research 106 (11): 1343–1348. https://doi.org/10.1017/S0953756202006779
  6. de Gruyter, J., Woudenberg, J.H., Aveskamp, M.M., Verkley, G.J., Groenewald, J.Z. & Crous, P.W. (2013) Redisposition of phoma-like anamorphs in Pleosporales. Studies in Mycology 75 (1): 1–36. https://doi.org/10.3114/sim0004
  7. de Silva, N.I., Hyde, K.D., Lumyong, S., Phillips, A.J.L., Bhat, D.J., Maharachchikumbura, S.S.N., Thambugala, K.M., Tennakoon, D.S., Suwannarach, N. & Karunarathna, S.C. (2022) Morphology, phylogeny, host association and geography of fungi associated with plants of Annonaceae, Apocynaceae and Magnoliaceae. Mycosphere 13 (1): 955–1076. https://doi.org/10.5943/mycosphere/13/1/12
  8. Dissanayake, A., Bhunjun, C., Maharachchikumbura, S. & Liu, J.K. (2020) Applied aspects of methods to infer phylogenetic relationships amongst fungi. Mycosphere 11 (1): 2652–2676. https://doi.org/10.5943/mycosphere/11/1/18
  9. Giraldo, A., Crous, P.W., Schumacher, R.K., Cheewangkoon, R., Ghobad-Nejhad, M. & Langer, E. (2017) The Genera of Fungi—G3: Aleurocystis, Blastacervulus, Clypeophysalospora, Licrostroma, Neohendersonia and Spumatoria. Mycological Progress 16 (4): 325–348. https://doi.org/10.1007/s11557-017-1270-8
  10. Hodhod, M.S., Abdel-Wahab, M.A., Bahkali, A.H.A. & Hyde, K.D. (2012) Amarenographium soliumsp. nov. from Yanbu Mangroves in the Kingdom of Saudi Arabia. Cryptogamie, Mycologie 33 (3): 285–294. https://doi.org/10.7872/crym.v33.iss3.2012.285
  11. Hongsanan, S., Hyde, K., Phookamsak, R., Wanasinghe, D., McKenzie, E., Sarma, V., Boonmee, S., Lücking, R., Bhat, D. & Liu, N. (2020) Refined families of Dothideomycetes: Dothideomycetidae and pleosporomycetidae. Mycosphere 11: 1553–2107. https://doi.org/10.5943/mycosphere/11/1/13
  12. Hyde, K., Chaiwan, N., Norphanphoun, C., Boonmee, S., Camporesi, E., Chethana, K., Dayarathne, M., De Silva, N., Dissanayake, A. & Ekanayaka, A. (2018) Mycosphere notes 169–224. Mycosphere 9 (2): 271–430. https://doi.org/10.5943/mycosphere/9/2/8
  13. Katoh, K., Rozewicki, J. & Yamada, K.D. (2019) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in bioinformatics 20 (4): 1160–1166. https://doi.org/10.1093/bib/bbx108
  14. Kruys, A., Eriksson, O.E. & Wedin, M. (2006) Phylogenetic relationships of coprophilous Pleosporales (Dothideomycetes, Ascomycota), and the classification of some bitunicate taxa of unknown position. Mycological research 110 (5): 527–536. https://doi.org/10.1016/j.mycres.2006.03.002
  15. Larsson, A. (2014) AliView: a fast and lightweight alignment viewer and editor for large datasets. Bioinformatics 30 (22):3276–3278. https://doi.org/10.1093/bioinformatics/btu531
  16. Li, G.J., Hyde, K.D., Zhao, R.L., Hongsanan, S., Abdel-Aziz, F.A., Abdel-Wahab, M.A., Alvarado, P., Alves-Silva, G., Ammirati, J.F., Ariyawansa, H.A., Baghela, A., Bahkali, A.H., Beug, M., Bhat, D.J., Bojantchev, D., Boonpratuang, T., Bulgakov, T.S., Camporesi, E., Boro, M.C., Ceska, O., Chakraborty, D., Chen, J.J., Chethana, K.W.T., Chomnunti, P., Consiglio, G., Cui, B.K., Dai, D.Q., Dai, Y.C., Daranagama, D.A., Das, K., Dayarathne, M.C., De Crop, E., De Oliveira, R.J.V., de Souza, C.A.F., de Souza, J.I., Dentinger, B.T.M., Dissanayake, A.J., Doilom, M., Drechsler-Santos, E.R., Ghobad-Nejhad, M., Gilmore, S.P., Góes-Neto, A., Gorczak, M., Haitjema, C.H., Hapuarachchi, K.K., Hashimoto, A., He, M.Q., Henske, J.K., Hirayama, K., Iribarren, M.J., Jayasiri, S.C., Jayawardena, R.S., Jeon, S.J., Jerônimo, G.H., Jesus, A.L., Jones, E.B.G., Kang, J.C., Karunarathna, S.C., Kirk, P.M., Konta, S., Kuhnert, E., Langer, E., Lee, H.S., Lee, H.B., Li, W.J., Li, X.H., Liimatainen, K., Lima, D.X., Lin, C.G., Liu, J.K., Liu, X.Z., Liu, Z.Y., Luangsa-ard, J.J., Lücking, R., Lumbsch, H.T., Lumyong, S., Leaño, E.M., Marano, A.V., Matsumura, M., McKenzie, E.H.C., Mongkolsamrit, S., Mortimer, P.E., Nguyen, T.T.T., Niskanen, T., Norphanphoun, C., O’Malley, M.A., Parnmen, S., Pawłowska, J., Perera, R.H., Phookamsak, R., Phukhamsakda, C., Pires-Zottarelli, C.L.A., Raspé, O., Reck, M.A., Rocha, S.C.O., de Santiago, A.L.C.M.A., Senanayake, I.C., Setti, L., Shang, Q.J., Singh, S.K., Sir, E.B., Solomon, K.V., Song, J., Srikitikulchai, P., Stadler, M., Suetrong, S., Takahashi, H., Takahashi, T., Tanaka, K., Tang, L.P., Thambugala, K.M., Thanakitpipattana, D., Theodorou, M.K., Thongbai, B., Thummarukcharoen, T., Tian, Q., Tibpromma, S., Verbeken, A., Vizzini, A., Vlasák, J., Voigt, K., Wanasinghe, D.N., Wang, Y., Weerakoon, G., Wen, H.A., Wen, T.C., Wijayawardene, N.N., Wongkanoun, S., Wrzosek, M., Xiao, Y.P., Xu, J.C., Yan, J.Y., Yang, J., Da Yang, S., Hu, Y., Zhang, J.F., Zhao, J., Zhou, L.W., Peršoh, D., Phillips, A.J.L. & Maharachchikumbura, S.S.N. (2016) Fungal diversity notes 253–366: taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity 78 (1): 1–237. https://doi.org/10.1007/s13225-016-0366-9
  17. Li, W.L., Liang, R.R., Dissanayake, A.J. & Liu, J.K. (2023) Mycosphere Notes 413–448: Dothideomycetes associated with woody oil plants in China. Mycosphere 14 (1): 1436–1529. https://doi.org/10.5943/mycosphere/14/1/16
  18. Liu, J.K., Chomnunti, P., Cai, L., Phookamsak, R., Chukeatirote, E., Jones, E., Moslem, M. & Hyde, K.D. (2010) Phylogeny and morphology of Neodeightonia palmicola sp. nov. from palms. Sydowia 62 (2): 261–276.
  19. Liu, Y.J., Whelen, S. & Hall, B.D. (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Molecular biology and evolution 16 (12): 1799–1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092
  20. Lu, L., Karunarathna, S.C., Hyde, K.D., Bhat, D.J., Dai, D.Q., Jayawardena, R.S. & Tibpromma, S. (2022) Crassiparies yunnanensis sp. nov.(Neohendersoniaceae, Pleosporales) from dead twigs of Coffea arabica in China. Phytotaxa 543 (4): 244–254. https://doi.org/10.11646/phytotaxa.543.4.4
  21. Luttrell, E.S. (1955) The Ascostromatic Ascomycetes. Mycologia 47 (4): 511–532. https://doi.org/10.1080/00275514.1955.12024473
  22. Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES science gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE). Institute of Electrical and Electronics Engineers, New Orleans: 1–8. https://doi.org/10.1109/GCE.2010.5676129
  23. Nylander, J.A.A. (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Center, Uppsala University.
  24. Rambaut, A. (2014) FigTree. Tree Fig. Drawing Tool, v. 1.4.4. Available from: http://tree.bio.ed.ac.uk/software/figtree/ (accessed 18 September 2023)
  25. Ramesh, C. (2003) Loculoascomycetes from India. Frontiers of Fungal Diversity in India: Prof Kamal Festschrif: 457–479.
  26. Rehner, S.A. & Buckley, E. (2005) A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97 (1): 84–98. https://doi.org/10.1080/15572536.2006.11832842
  27. Ronquist, F., Teslenko, M., Van Der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic biology 61 (3): 539–542. https://doi.org/10.1093/sysbio/sys029
  28. Senanayake, I.C., Rathnayaka, A.R., Marasinghe, D.S., Calabon, M.S., Gentekaki, E., Lee, H.B., Hurdeal, V.G., Pem, D., Dissanayake, L.S., Wijesinghe, S.N., Bundhun, D., Nguyen, T.T., Goonasekara, I.D., Abeywickrama, P.D., Bhunjun, C.S., Jayawardena, R.S., Wanasinghe, D.N., Jeewon, R., Bhat, D.J. & Xiang, M.M. (2020) Morphological approaches in studying fungi: collection, examination, isolation, sporulation and preservation. Mycosphere 11 (1): 2678–2754. https://doi.org/10.5943/mycosphere/11/1/20
  29. Senwanna, C., Mapook, A., Samarakoon, M., Karunarathna, A., Wang, Y., Tang, A., Haituk, S., Suwannarach, N., Hyde, K.D. & Cheewangkoon, R. (2021) Ascomycetes on Para rubber (Hevea brasiliensis). Mycosphere 12 (1): 1334–1512. https://doi.org/10.5943/mycosphere/12/1/18
  30. Sieber, T.N. (2007) Endophytic fungi in forest trees: are they mutualists? Fungal Biology Reviews 21 (2–3): 75–89. https://doi.org/10.1016/j.fbr.2007.05.004
  31. Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web servers. Systematic biology 57 (5): 758–771. https://doi.org/10.1016/j.fbr.2007.05.004
  32. Swofford, D.L. & Sullivan, J. (2003) Phylogeny inference based on parsimony and other methods using PAUP*. The phylogenetic handbook: a practical approach to DNA and protein phylogeny, cáp 7:160–206.
  33. Tanaka, K., Hashimoto, A., Matsumura, M. & Sato, T. (2017) Brevicollum, a new genus in Neohendersoniaceae, Pleosporales. Mycologia 109 (4): 608–619. https://doi.org/10.1080/00275514.2017.1387432
  34. Vaidya, G., Lohman, D.J. & Meier, R. (2011) SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information. Cladistics 27 (2): 171–180. https://doi.org/10.1111/j.1096-0031.2010.00329.x
  35. White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR protocols: a guide to methods and applications 18 (1): 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
  36. Wijayawardene, N.N., Hyde, K.D., Dai, D.Q., Sánchez-García, M., Goto, B.T., Saxena, R.K., Erdoðdu, M., Selçuk, F., Rajeshkumar, K.C., Aptroot, A., Błaszkowski, J., Boonyuen, N., da Silva, G.A., de Souza, F.A., Dong, W., Ertz, D., Haelewaters, D., Jones, E.B.G., Karunarathna, S.C., Kirk, P.M., Kukwa, M., Kumla, J., Leontyev, D.V., Lumbsch, H.T., Maharachchikumbura, S.S.N., Marguno, F., Martínez-Rodríguez, P., Mešić, A., Monteiro, J.S., Oehl, F., Pawłowska, J., Pem, D., Pfliegler, W.P., Phillips, A.J.L., Pošta, A., He, M.Q., Li, J.X., Raza, M., Sruthi, O.P., Suetrong, S., Suwannarach, N., Tedersoo, L., Thiyagaraja, V., Tibpromma, S., Tkalčec, Z., Tokarev, Y.S., Wanasinghe, D.N., Wijesundara, D.S.A., Wimalaseana, S., Madrid, H., Zhang, G.Q., Gao, Y., Sánchez-Castro, I., Tang, L.Z., Stadler, M., Yurkov, A. & Thines, M. (2022) Outline of Fungi and fungus-like taxa—2021. Mycosphere 13 (1): 53–453. https://doi.org/10.5943/mycosphere/13/1/2
  37. Wijayawardene, N.N., Hyde, K.D., Wanasinghe, D.N., Papizadeh, M., Goonasekara, I.D., Camporesi, E., Bhat, D.J., McKenzie, E.H.C., Phillips, A.J.L., Diederich, P., Tanaka, K., Li, W.J., Tangthirasunun, N., Phookamsak, R., Dai, D.-Q., Dissanayake, A.J., Weerakoon, G., Maharachchikumbura, S.S.N., Hashimoto, A., Matsumura, M., Bahkali, A.H. &Wang, Y. (2016) Taxonomy and phylogeny of dematiaceous coelomycetes. Fungal Diversity 77 (1): 1–316. https://doi.org/10.1007/s13225-016-0360-2