Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2024-01-11
Page range: 16-30
Abstract views: 119
PDF downloaded: 2

Morphology and multi-gene phylogeny reveal a new Brunneofusispora species from coffee in Yunnan Province, China

Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, P.R. China. School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.
Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, P.R. China.
Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, P.R. China. National Institute of Fundamental Studies (NIFS), Kandy, Sri Lanka.
School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.
Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, P.R. China. National Institute of Fundamental Studies (NIFS), Kandy, Sri Lanka.
Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, P.R. China.
Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia.
School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.
1 new species Coffea coffee fungi DNA Occultibambusaceae taxonomy Fungi

Abstract

Coffee is one of the most important cash crops native to north-central Africa, and the second most popular beverage ingredient worldwide. Coffee-associated fungal pathogens have been well studied, but few studies have reported saprobes of coffee. In China, Yunnan Province is the main region of coffee plantations and production. To investigate saprobic fungi of coffee plants, dead branches of Coffea with fungal fruiting bodies were collected in Baoshan City, Yunnan Province, China. Multi-gene phylogenetic analyses of SSU, ITS, LSU, RPB2, and TEF1-α sequence data indicated that our collections formed an independent branch within Brunneofusispora and sister to B. sinensis. The new species B. baoshanensis, characterized by uniloculate ascomata with an erumpent long neck, and inequilateral, ends acute, 1-septate, constricted at the septum ascospores with mucilaginous sheath, was identified based on morphology and multi-gene phylogeny. This is the first report of Brunneofusispora species isolated from Coffea in China. A complete description, micrographs, and a phylogenetic tree showing the placement of the new species are provided.

References

  1. Abdollahzadeh, J., Groenewald, J.Z., Coetzee, M.P.A., Wingfield, M.J. & Crous, P.W. (2020) Evolution of lifestyles in Capnodiales. Studies in Mycology 95: 381–414. https://doi.org/10.1016/j.simyco.2020.02.004
  2. Asad, S., Priyashantha, A.K.H., Tibpromma, S., Luo, Y., Zhang, J., Fan, Z., Zhao, L., Shen, K., Niu, C., Lu, L., Promputtha, I. & Karunarathna, S.C. (2023) Coffee-Associated Endophytes: Plant Growth Promotion and Crop Protection. Biology 12: 911. https://doi.org/10.3390/biology12070911
  3. Barr, M.E. (1979a) A classification of Loculoascomycetes. Mycologia 71: 935–995.
  4. Barr, M.E. (1979b) On the Massariaceae in North America. Mycotaxon 9: 17–37.
  5. Barr, M.E. (1987) Prodromus to class Loculoascomycetes.
  6. Barr, M.E. & Huhndorf, S.M. (2001) Loculoascomycetes. In: McLaughlin, D.J., McLaughlin, E.G. & Lemke, P.A. (Eds.) The mycota VII, part A. Systematics and evolution. Springer Verlag, Berlin, pp. 283–305. https://doi.org/10.1007/978-3-662-10376-0_13
  7. Besttoppers. (2023) Available from: https://besttoppers.com/top-10-widely-consumed-drinks (accessed: 8 September 2023).
  8. Calabon, M.S., Jones, E.B.G., Boonmee, S., Doilom, M., Lumyong, S. & Hyde, K.D. (2021) Five novel freshwater Ascomycetes indicate high undiscovered diversity in lotic habitats in Thailand. Journal of Fungi 7: 117. https://doi.org/10.3390/jof7020117
  9. Capella-Gutiérrez, S., Silla-Martínez, J.M. & Gabaldón, T. (2009) TrimAl: A tool for automated alignment trimming in large-scalephylogenetic analyses. Bioinformatics 25: 1972–1973. https://doi.org/10.1093/bioinformatics/btp348
  10. Chaiwan, N., Gomdola, D., Wang, S., Monkai, J., Tibpromma, S., Doilom, M., Wanasinghe, D.N., Mortimer, P.E., Lumyong, S. & Hyde, K.D. (2021) https://gmsmicrofungi.org: an online database providing updated information of microfungi in the Greater Mekong Subregion. Mycosphere 12: 1513–1526. https://doi.org/10.5943/mycosphere/12/1/19
  11. Chethana, T.K.W., Manawasinghe, I.S., Hurdeal, V.G., Bhunjun, C.S., Appadoo, M.A., Gentekaki, E., Raspé, O., Promputtha, I. & Hyde, K.D. (2021) What are fungal species and how to delineate them? Fungal Diversity 109: 1–25. https://doi.org/10.1007/s13225-021-00483-9
  12. Dai, D.Q., Phookamsak, R., Wijayawardene, N.N., Li, W.J., Bhat, D.J., Xu, J.C., Taylor, J.E., Hyde, K.D. & Chukeatirote, E. (2017) Bambusicolous fungi. Fungal Diversity 82: 1–105. https://doi.org/10.1007/s13225-016-0367-8
  13. Del Prado, R., Schmitt, I., Kautz, S., Palice, Z., Lücking, R. & Lumbsch, H.T. (2006) Molecular data place Trypetheliaceae in Dothideomycetes. Mycological Progress 110: 511–520. https://doi.org/10.1016/j.mycres.2005.08.013
  14. Dissanayake, A.J., Bhunjun, C.S., Maharachchikumbura, S.S. & Liu, J.K. (2020) Applied aspects of methods to infer phylogenetic relationships amongst fungi. Mycosphere 11: 265–276. https://doi.org/10.5943/mycosphere/11/1/18
  15. Doilom, M., Dissanayake, A.J., Wanasinghe, D.N., Boonmee, S., Liu, J.K., Bhat, D.J., Taylor, J.E., Bahkali, A.H., Mckenzie, E.H.C. & Hyde, K.D. (2017) Microfungi on Tectona grandis (teak) in Northern Thailand. Fungal Diversity 82: 107–182. https://doi.org/10.1007/s13225-016-0368-7
  16. Eriksson, O.E. (1981) The families of bitunicate ascomycetes. Nordic Journal of Botany 1: 800.
  17. Eriksson, O.E. & Winka, K. (1997) Supraordinal taxa of Ascomycota. Myconet 1: 1–16.
  18. Glez-Peña, D., Gómez-Blanco, D., Reboiro-Jato, M., Fdez-Riverola, F. & Posada, D. (2010) ALTER: program-oriented conversion of DNA and protein alignments. Nucleic Acids Research 38: 14–18. https://doi.org/10.1093/nar/gkq321
  19. Hailu, B.Z. (2020) Fungal disease dynamics, genetic variation and biodiversity-yield relationships: a study along a gradient of coffee management in southwestern Ethiopia. Ph.D. Thesis, Stockholm University, Faculty of Science, Department of Ecology, Environment and Plant Sciences, Stockholm, Sweden.
  20. Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98. https://doi.org/10.1021/bk-1999-0734.ch008
  21. Haridas, S., Albert, R., Binder, M., Bloem, J., LaButti, K., Salamov, A., Andreopoulos, B., Baker, S.E., Barry, K., Bills, G., Bluhm, B.H., Cannon, C., Castanera, R., Culley, D.E., Daum, C., Ezra, D., González, J.B., Henrissat, B., Kuo, A., Liang, C., Lipzen, A., Lutzoni, F., Magnuson, J., Mondo, S.J., Nolan, M., Ohm, R.A., Pangilinan, J., Park, H.J., Ramírez, L., Alfaro, M., Sun, H., Tritt, A., Yoshinaga, Y., Zwiers, L.H., Turgeon, B.G., Goodwin, S.B., Spatafora, J.W., Crous, P.W. & Grigoriev, I.V. (2020) 101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens. Studies in Mycology 96: 141–153. https://doi.org/10.1016/j.simyco.2020.01.003
  22. Hatakeyama, S., Tanaka, K. & Harada, Y. (2008) Bambusicolous fungi in Japan (7): A new coelomycetous genus, Versicolorisporium. Mycoscience 49: 211–214. https://doi.org/10.1007/S10267-008-0409-5
  23. Hernández-Restrepo, M., Giraldo, A., Van Doorn, R., Wingfield, M.J., Groenewald, J.Z., Barreto, R.W., Colmán, A.A., Mansur, P.S.C. & Crous, P.W. (2020) The Genera of Fungi – G6: Arthrographis, Kramasamuha, Melnikomyces, Thysanorea, and Verruconis. Fungal Systematics and Evolution 6: 1–24. https://doi.org/10.3114/fuse.2020.06.01
  24. Hindorf, H. & Omondi, C.O. (2011) A review of three major fungal diseases of Coffea arabica L. in the rainforests of Ethiopia and progress in breeding for resistance in Kenya. Journal of Advanced Research 2: 109–120. https://doi.org/10.1016/j.jare.2010.08.006
  25. Hongsanan, S., Hyde, K.D., Phookamsak, R., Wanasinghe, D.N., McKenzie, E.H.C., Sarma, V.V., Boonmee, S., Lücking, R., Bhat, D.J., Liu, N.G., Tennakoon, D.S., Pem, D., Karunarathna, A., Jiang, S.H., Jones, E.B.G., Phillips, A.J.L., Manawasinghe, I.S., Tibpromma, S., Jayasiri, S.C., Sandamali, D.S., Jayawardena, R.S., Wijayawardene, N.N., Ekanayaka, A.H., Jeewon, R., Lu, Y.Z., Dissanayake, A.J., Zeng, X.Y., Luo, Z.L., Tian, Q., Phukhamsakda, C., Thambugala, K.M., Dai, D.Q., Chethana, K.W.T., Samarakoon, M.C., Ertz, D., Bao, D.F., Doilom, M., Liu, J.K., Pérez-Ortega, S., Suija, A., Senwanna, C., Wijesinghe, S.N., Konta, S., Niranjan, M., Zhang, S.N., Ariyawansa, H.A., Jiang, H.B., Zhang, J.F., Norphanphoun, C., de Silva, N.I., Thiyagaraja, V., Zhang, H., Bezerra, J.D.P., Miranda-González, R., Aptroot, A., Kashiwadani, H., Harishchandra, D., Sérusiaux, E., Aluthmuhandiram, J.V.S., Abeywickrama, P.D., Devadatha, B., Wu, H.X., Moon, K.H., Gueidan, C., Schumm, F., Bundhun, D., Mapook, A., Monkai, J., Chomnunti, P., Suetrong, S., Chaiwan, N., Dayarathne, M.C., Yang, J., Rathnayaka, A.R., Bhunjun, C.S., Xu, J.C., Zheng, J.S., Liu, G., Feng, Y. & Xie, N. (2020a) Refined families of Dothideomycetes: Dothideomycetidae and Pleosporomycetidae. Mycosphere 11: 1553–2107. https://doi.org/10.5943/mycosphere/11/1/13
  26. Hongsanan, S., Hyde, K.D., Phookamsak, R., Wanasinghe, D.N., McKenzie, E.H., Sarma, V.V., Lücking, R., Boonmee, S., Bhat, J.D., Liu, N.G., Tennakoon, D.S., Pem, D., Karunarathna, A., Jiang, S.H., Jones, G.E.B., Phillips, A.J.L., Manawasinghe, I.S., Tibpromma, S., Jayasiri, S.C., Sandamali, D., Jayawardena, R.S., Wijayawardene, N.N., Ekanayaka, A.H., Jeewon, R., Lu, Y.Z., Phukhamsakda, C., Dissanayake, A.J., Zeng, X.Y., Luo, Z.L., Tian, Q., Thambugala, K.M., Dai, D.Q., Samarakoon, M.C., Chethana, K.W.T., Ertz, D., Doilom, M., Liu, J.K., Pérez‑Ortega, S., Suija, A., Senwanna, C., Wijesinghe, S.N., Niranjan, M., Zhang, S.N., Ariyawansa, H.A., Jiang, H.B., Zhang, J.F., Norphanphoun, C., de Silva, N.I., Thiyagaraja, V., Zhang, H., Bezerra, J.D.P., Miranda‑González, R., Aptroot, A., Kashiwadani, H., Harishchandra, D., Sérusiaux, E., Abeywickrama, P.D., Bao, D.F., Devadatha, B., Wu, H.X., Moon, K.H., Gueidan, C., Schumm, F., Bundhu, D., Mapook, A., Monkai, J., Bhunjun, C.S., Chomnunti, P., Suetrong, S., Chaiwan, N., Dayarathne, M.C., Yang, J., Rathnayaka, A.R., Xu, J.C., Zheng, J.S., Liu, G., Feng, Y. & Xie, N. (2020b). Refined families of Dothideomycetes: orders and families incertae sedis in Dothideomycetes. Fungal Diversity 105: 17–318. https://doi.org/10.1007/s13225-020-00462-6
  27. Hyde, K.D., Jones, E.B.G., Liu, J.K., Ariyawansa, H., Boehm, E., Boonmee, S., Braun, U., Chomnunti, P., Crous, P.W., Dai, D.Q., Diederich, P., Dissanayake, A., Doilom, M., Doveri, F., Hongsanan, S., Jayawardena, R., Lawrey, J.D., Li, Y.M., Liu, Y.X., Lücking, R., Monkai, J., Muggia, L., Nelsen, M.P., Pang, K.L., Phookamsak, R., Senanayake, I.C., Shearer, C.A., Suetrong, S., Tanaka, K., Thambugala, K.M., Wijayawardene, N.N., Wikee, S., Wu, H.X., Zhang, Y., Aguirre-Hudson, B., Alias, S.A., Aptroot, A., Bahkali, A.H., Bezerra, J.L., Bhat, D.J., Camporesi, E., Chukeatirote, E., Gueidan, C., Hawksworth, D.L., Hirayama, K., de Hoog, S., Kang, J.C., Knudsen, K., Li, W.J., Li, X.H., Liu, Z.Y., Mapook, A., McKenzie, E.H.C., Miller, A.N., Mortimer, P.E., Phillips, A.J.L., Raja, H.A., Scheuer, C., Schumm, F., Taylor, J.E., Tian, Q., Tibpromma, S., Wanasinghe, D.N., Wang, Y., Xu, J.C., Yacharoen, S., Yan, J.Y. & Zhang, M. (2013) Families of Dothideomycetes. Fungal Diversity 63: 1–313. https://doi.org/10.1007/s13225-013-0263-4
  28. Index Fungorum (2024) Available from: http://www.indexfungorum.org (accessed: 2 January 2024).
  29. Jaklitsch, W.M. & Voglmayr, H. (2016) Hidden diversity in Thyridaria and a new circumscription of the Thyridariaceae. Studies in Mycology 85: 35–64. http://dx.doi.org/10.1016/j.simyco.2016.09.002
  30. Janex-Favre, M.C. (1971) Recherches sur l’ontogenie, l’organisation et les asques de quelques pyrenolichens. Revue Bryologique et Lichénologique 37: 421–469.
  31. Jayasiri, S.C., Hyde, K.D., Ariyawansa, H.A., Bhat, J., Buyck, B., Cai, L., Dai, Y.C., Abd-Elsalam, K.A., Ertz, D., Hidayat, I., Jeewon, R., Jones, E.B.G., Bahkali, A.H., Karunarathna, S.C., Liu, J.K., Luangsa-ard, J.J., Lumbsch, H.T., Maharachchikumbura, S.S.N., McKenzie, E.H.C., Moncalvo, J.M., Ghobad-Nejhad, M., Nilsson, H., Pang, K.A., Pereira, O.L., Phillips, A.J.L., Raspé, O., Rollins, A.W., Romero, A.I., Etayo, J., Selçuk, F., Stephenson, S.L., Suetrong, S., Taylor, J.E., Tsui, C.K.M., Vizzini, A., Abdel-Wahab, M.A., Wen, T.C., Boonmee, S., Dai, D.Q., Daranagama, D.A., Dissanayake, A.J., Ekanayaka, A.H., Fryar, S.C., Hongsanan, S., Jayawardena, R.S., Li, W.J., Perera, R.H., Phookamsak, R., de Silva, N.I., Thambugala, K.M., Tian, Q., Wijayawarden, N.N., Zhao, R.L., Zhao, Q., Kang, J.C. & Promputtha, I. (2015) The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. Fungal Diversity 74: 3–18. https://doi.org/10.1007/s13225-015-0351-8
  32. Jayasiri, S.C., Hyde, K.D., Jones, E.B.G., McKenzie, E.H.C., Jeewon, R., Phillips, A.J.L., Bhat, D.J., Wanasinghe, D.N., Liu, J.K., Lu, Y.Z., Kang, J.C., Xu, J. & Karunarathna, S.C. (2019) Diversity, morphology and molecular phylogeny of Dothideomycetes on decaying wild seed pods and fruits. Mycosphere 10: 1–186. https://doi.org/10.5943/mycosphere/10/1/1
  33. Jiang, H.B., Phookamsak, R., Hyde, K.D., Mortimer, P.E., Xu, J.C., Kakumyan, P., Karunarathna, S.C. & Kumla, J. (2021) A taxonomic appraisal of bambusicolous fungi in Occultibambusaceae (Pleosporales, Dothideomycetes) with new collections from Yunnan Province, China. Life 11: 932. https://doi.org/10.3390/life11090932
  34. Katoh, K. & Standley, D.M. (2016) A simple method to control overalignment in the MAFFT multiple sequence alignment program. Bioinformatics 32: 1933–1942. https://doi.org/10.1093/bioinformatics/btw108
  35. Larsson, A. (2014) AliView: a fast and lightweight alignment viewer and editor for large data sets. Bioinformatics 30: 3276–3278. http://dx.doi.org/10.1093/bioinformatics/btu531
  36. Letrouit-Galinou, M.A., Parguey-Leduc, A. & Janex-Favre, M.C. (1994) Ascoma structure and ontogenesis in ascomycete systematics. In: Hawksworth, D.L. (Ed.) Ascomycete systematics. Problems and perspectives in the nineties. NATO ASI, vol. 269. Plenum Press, New York and London, pp. 23–36.
  37. Luttrell, E.S. (1955) The ascostromatic Ascomycetes. Mycologia 47: 511–532.
  38. Liu, J.K., Hyde, K.D., Jeewon, R., Phillips, A.J., Maharachchikumbura, S.S.N., Ryberg, M., Liu, Z.Y. & Zhao, Q. (2017) Ranking higher taxa using divergence times: a case study in Dothideomycetes. Fungal Diversity 84: 75–99. https://doi.org/10.1007/s13225-017-0385-1
  39. Liu, Y.J. & Hall, D.B. (2004) Body plan evolution of ascomycetes, as inferred from an RNA polymerase II Phylogeny. Proceedings of the National Academy of Sciences 101: 4507–4512. https://doi.org/10.1073/pnas.0400938101
  40. Liu, Y.J., Whelen, S. & Hall, B.D. (1999) Phylogenetic relationships among Ascomycetes: Evidence from an RNA polymerase II subunit. Molecular biology and evolution 16: 1799–1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092
  41. Lu, L., Tibpromma, S., Karunarathna, S.C., Jayawardena, R.S., Lumyong, S., Xu, J.C. & Hyde, K.D. (2022a) Comprehensive review of fungi on coffee. Pathogens 11: 411. https://doi.org/10.3390/pathogens11040411
  42. Lu, L., Karunarathna, S.C., Dai, D.Q., Jayawardena, R.S., Suwannarach, N. & Tibpromma, S. (2022b) Three new species of Nigrograna (Dothideomycetes, Pleosporales) associated with Arabica coffee from Yunnan Province, China. MycoKeys 94: 51–71. https://doi.org/10.3897/mycokeys.94.95751
  43. Lu, L., Karunarathna, S.C., Hyde, K.D., Bhat, D.J., Dai, D.Q., Jayawardena, R.S. & Tibpromma, S. (2022c) Crassiparies yunnanensis sp. nov. (Neohendersoniaceae, Pleosporales) from dead twigs of Coffea arabica in China. Phytotaxa 543: 244–254. https://doi.org/10.11646/phytotaxa.543.4.4
  44. Lu, L., Karunarathna, S.C., Dai, D.Q., Xiong, Y.R., Suwannarach, N., Stephenson, S.L., Elgorban, A.M., Al-Rejaie, S., Jayawardena, R.S. & Tibpromma, S. (2022d) Description of Four Novel Species in Pleosporales Associated with Coffee in Yunnan, China. Journal of Fungi 8: 1113. https://doi.org/10.3390/jof8101113
  45. Ma, J., Li, J., He, H., Jin, X., Cesarino, I., Zeng, W. & Li, Z. (2022) Characterization of Sensory Properties of Yunnan Coffee. Current Research in Food Science 5: 1205–1215. https://doi.org/10.1016/j.crfs.2022.07.010
  46. Mapook, A., Hyde, K.D., McKenzie, E.H.C., Jones, E.B.G., Bhat, D., Jeewon, R., Stadler, M., Samarakoon, M.C., Malaithong, M., Tanunchai, B., Buscot, F., Wubet, T. & Purahong, W. (2020) Taxonomic and phylogenetic contributions to fungi associated with the invasive weed Chromolaena odorata (Siam weed). Fungal Diversity 101: 1–175. https://doi.org/10.1007/s13225-020-00444-8
  47. Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the gateway computing environments workshop (GCE). Institute of Electrical and Electronics Engineers, New Orleans, pp. 1–8. https://doi.org/10.1109/GCE.2010.5676129
  48. Muller, R.A., Berry, D., Avelino, J. & Bieysse, D. (2009) Coffee diseases. In: Coffee: Growing, Processing, Sustainable Production. A Guidebook for Growers, Processors, Traders and Researchers. Germany Wiley-VCH Verlag GmbH & Co.: Weinheim, Germany pp. 495–549.
  49. Nannfeldt, J.A. (1932) Studien uber die Morphologie und Systematik der nicht–lichenisierten, inoperkulaten Discomyceten. Nova acta Regiae Societatis Scientiarum Upsaliensis IV 8: 1–368.
  50. Nylander, J.A.A. (2004) MrModeltest V2. Program distributed by the author. In Evolutionary Biology Centre; Uppsala University: Uppsala, Sweden.
  51. Pem, D., Jeewon, R., Chethana, K.W.T., Hongsanan, S., Doilom, M., Suwannarach, N. & Hyde, K.D. (2021) Species concepts of Dothideomycetes: classification, phylogenetic inconsistencies and taxonomic standardization. Fungal Diversity 109: 283–319. https://doi.org/10.1007/s13225-021-00485-7
  52. Phookamsak, R., Hyde, K.D., Jeewon, R., Bhat, D.J., Jones, E.G., Maharachchikumbura, S.S., Raspe, O., Karunarathna, S.C., Wanasinghe, D.N., Hongsanan, S., Doilom, M., Tennakoon, D.S., Machado, AR., Firmino, A.L., Ghosh, A., Karunarathna, A., Mešić, A., Dutta, A.K., Thongbai, B., Devadatha, B., Norphanphoun, C., Senwanna, C., Wei, D.P., Pem, D., Ackah, F.K., Wang, G.N., Jiang, H.B., Madrid, H., Lee, H.B., Goonasekara, I.D., Manawasinghe, I.S., Kušan, I., Cano, J., Gené, J., Li, J.F., Das, K., Acharya, K., Anil Raj, K.N., Latha, K.P.D., Chethana, K.W.T., He, M.Q., Dueñas, M., Jadan, M., Martín, M.P., Samarakoon, M.C., Dayarathne, M.C., Raza, M., Park, M.S., Telleria, M.T., Chaiwan1, N., Matočec, N., de Silva, N.I., Pereira, O.L., Singh, P.N., Manimohan, P., Uniyal, P., Shang, Q.J., Bhatt, R.P., Perera, R.H., Alvarenga, R.L.M., Nogal-Prata, S., Singh, S.K., Vadthanarat, S., Oh, S.Y., Huang, S.K., Rana, S., Konta, S., Paloi, S., Jayasiri, S.C., Jeon, S.J., Mehmood, T., Gibertoni, T.B., Nguyen, T.T.T., Singh, U., Thiyagaraja, V., Sarma,V.V., Dong, W., Yu, X.D., Lu, Y.Z., Lim, Y.W., Chen,Y., Tkalčec, Z., Zhang, Z.F., Luo, Z.L., Daranagama, D.A., Thambugala, K.M., Tibpromma, S., Camporesi, E., Bulgakov, T.S., Dissanayake, A.J., Senanayake, I.C., Dai, D.Q., Tang, L.Z., Khan, S., Zhang, H., Promputtha, I., Cai, L., Chomnunti, P., Zhao, R.L., Lumyong, S., Boonmee, S., Wen, T.C., Mortimer, P.E. & Xu, J.C. (2019) Fungal diversity notes 929–1035: taxonomic and phylogenetic contributions on genera and species of fungi. Fungal diversity 95: 1–273. https://doi.org/10.1007/s13225-019-00421-w
  53. Phukhamsakda, C., McKenzie, E.H., Phillips, A.J., Jones, E.B.G., Bhat, D.J., Stadler, M., Bhunjun, C.S., Wanasinghe, D.N., Benjarong, T., Camporesi, E., Ertz, D., Jayawardena, R.S., Perera, R.H., Ekanayake, A.H., Tibpromma, S., Doilom, M., Xu, J.C. & Hyde, K.D. (2020) Microfungi associated with Clematis (Ranunculaceae) with an integrated approach to delimiting species boundaries. Fungal Diversity 102: 1–203. https://doi.org/10.1007/s13225-020-00448-4
  54. Poli, A., Bovio, E., Ranieri, L., Varese, G.C. & Prigione, V. (2020) News from the sea: a new genus and seven new species in the Pleosporalean families Roussoellaceae and Thyridariaceae. Diversity 12: 144. https://doi.org/10.3390/d12040144
  55. PSDC (2023) Plant Science Data Center. Available from: https://www.plantplus.cn/cn (accessed: 8 September 2023).
  56. Rannala, B. & Yang, Z. (1996) Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Journal of Molecular Evolution 43: 304–311. https://doi.org/10.1007/BF02338839
  57. Rehner, S.A. & Samuels, G.J. (1994) Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunit ribosomal DNA sequences. Mycological progress 98: 625–634.
  58. Reynolds, D.R. (1971) The sooty mold ascomycetes genus Limacinula. Mycologia 63: 1173–1209.
  59. Ribeyre, F. & Avelino, J. (2012) Impact of field pests and diseases on coffee quality. In: Oberthür, T., Läderach, P., Pohlan, H.A.J. & Cock, J.H. (eds.) Specialty Coffee: Managing Coffee. International Plant Nutrition Institute; IPNI [Southeast Asia]: Penang, Malaysia pp. 151–176.
  60. Rutherford, M.A. & Phiri, N. (2006) Pests and Diseases of Coffee in Eastern Africa: A Technical and Advisory Manual. CAB International: Wallingford, UK.
  61. Schoch, C.L., Ciufo, S., Domrachev, M., Hotton, C.L., Kannan, S., Khovanskaya, R., Leipe, D., Mcveigh, R., O’Neill, K., Robbertse, B., Sharma, S., Soussov, V., Sullivan, J.P., Sun, L., Turner, S. & Karsch-Mizrachi, I. (2020) NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database 2020: 1–21. https://doi.org/10.1093/database/baaa062
  62. Schoch, C.L., Crous, P.W., Groenewald, J.Z., Boehm, E.W.A., Burgess, T.I., de Gruyter, J., de Hoog, G.S., Dixon, L.J., Grube, M., Gueidan, C., Harada, Y., Hatakeyama, S., Hirayama, K., Hosoya, T., Huhndorf, S.M., Hyde, K.D., Jones, E.B.G., Kohlmeyer, J., Kruys, A., Li, Y.M., Lücking, R., Lumbsch, H.T., Marvanová, L., Mbatchou, J.S., McVay, A.H., Miller, A.N., Mugambi, G.K., Muggia, L., Nelsen, M.P., Nelson, P., Owensby, C.A., Phillips, A.J., Phongpaichit, S., Pointing, S.B., Pujade-Renaud, V., Raja, H.A., Plata, E.R., Robbertse, B., Ruibal, C., Sakayaroj, J., Sano, T., Selbmann, L., Shearer, C.A., Shirouzu, T., Slippers, B., Suetrong, S., Tanaka, K., Volkmann-Kohlmeyer, B., Wingfield, M.J., Wood, A.R., Woudenberg, J.H., Yonezawa, H., Zhang, Y. & Spatafora, J.W. (2009) A class-wide phylogenetic assessment of Dothideomycetes. Studies in Mycology 64: 1–15. https://doi.org/10.3114/sim.2009.64.01
  63. Senanayake, I.C., Rathnayake, A.R., Marasinghe, D.S., Calabon, M.S., Gentekaki, E., Lee, H.B., Hurdeal, V.G., Pem, D., Dissanayake, L.S., Wijesinghe, S.N., Bundhun, D., Nguyen, T.T., Goonasekara, I.D., Abeywickrama, P.D., Bhunjun, C.S., Jayawardena, R.S., Wanasinghe, D.N., Jeewon, R., Bhat, D.J. & Xiang, M.M. (2020) Morphological approaches in studying fungi: collection, examination, isolation, sporulation and preservation. Mycosphere 11: 2678–2754. https://doi.org/10.5943/mycosphere/11/1/20
  64. Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analysis with thousands of taxa and mixed models. Bioinformatics 22: 2688–2690. https://doi.org/10.1093/bioinformatics/btl446
  65. Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312–1313. https://doi.org/10.1093/bioinformatics/btu033
  66. Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web servers. Systematic biology 57: 758–771. https://doi.org/10.1080/10635150802429642
  67. Tehler, A. (1990) A new approach to the phylogeny of Euascomycetes with a cladistic outline of Arthoniales focussing on Roccellaceae. Canadian Journal of Botany 68: 2458–2492.
  68. Tehler, A. (1995) Morphological data, molecular data, and total evidence in phylogenetic analysis. Canadian Journal of Botany 73: 667–676.
  69. Tibpromma, S., Hyde, K.D., McKenzie, E.H.C., Bhat, D.J., Phillips, A.J.L., Wanasinghe, D.N., Samarakoon, M.C., Jayawardena, R.S., Dissanayake, A.J., Tennakoon, D.S., Doilom, M., Phookamsak, R., Tang, A.M.C., Xu, J.C., Mortimer, P.E., Promputtha, I., Maharachchikumbura, S.S.N., Khan, S. & Karunarathna, S.C. (2018) Fungal diversity notes 840–928: Micro-fungi 4 associated with Pandanaceae. Fungal Diversity 93: 1–160. https://doi.org/10.1007/s13225-018-0408-6
  70. Vaidya, G., Lohman, D.J. & Meier, R. (2011) SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information. Cladistics 27: 171–180. https://doi.org/10.1111/j.1096-0031.2010.00329.x
  71. Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
  72. Wanasinghe, D.N., Phukhamsakda, C., Hyde, K.D., Jeewon, R., Lee, H.B., Jones, E.B.G., Tibpromma, S., Tennakoon, D.S., Dissanayake, A.J., Jayasiri, S.C., Gafforov, Y., Camporesi, E., Bulgakov, T.S., Ekanayake, A.H., Perera, R.H., Samarakoon, M.C., Goonasekara, I.D., Mapook, A., Li, W.J., Senanayake, I.C., Li, J.F., Norphanphoun, C., Doilom, M., Bahkali, A.H., Xu, J.C., Mortimer, P.E., Tibell, L., Tibell, S. & Karunarathna, S.C. (2018) Fungal diversity notes 709–839: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on Rosaceae. Fungal Diversity 89: 1–236. https://doi.org/10.1007/s13225-018-0395-7
  73. Wanasinghe, D.N., Wijayawardene, N.N., Xu, J.C., Cheewangkoon, R. & Mortimer, P.E. (2020) Taxonomic novelties in Magnolia-associated pleosporalean fungi in the Kunming Botanical Gardens (Yunnan, China). PLoS ONE 15: e0235855. https://doi.org/10.1371/journal.pone.0235855
  74. White, T.J., Bruns, T., Lee, S.J.W.T. & Taylor, J.L. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR protocols: a guide to methods and applications 18: 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
  75. Wijayawardene, N.N., Hyde, K.D., Al-Ani, L.K.T., Tedersoo, L., Haelewaters, D., Rajeshkumar, K.C., Zhao, R.L., Aptroot, A., Leontyev, D.V., Saxena, R.K., Tokarev, Y.S., Dai, D.Q., Letcher, P.M., Stephenson, S.L., Ertz, D., Lumbsch, H.T., Kukwa, M., Issi, I.V., Madrid, H., Phillips, A.J.L., Selbmann, L., Pfliegler, W.P., Horváth, E., Bensch, K., Kirk, P.M., Kolaříková, K., Raja, H.A., Radek, R., Papp, V., Dima, V., Ma, J., Malosso, E., Takamatsu, S., Rambold, G., Gannibal, P.B., Triebel, D., Gautam, A.K., Avasthi, S., Suetrong, S., Timdal, E., Fryar, S.C., Delgado, G., Réblová, M., Doilom, M., Dolatabadi, S., Pawłowska, J.Z., Humber, R.A., Kodsueb, R., Sánchez-Castro, I., Goto, B.T., Silva, D.K.A., de Souza, F.A., Oehl, F., da Silva, G.A., Silva, I.R., Błaszkowski, J., Jobim, K., Maia, L.C., Barbosa, F.R., Fiuza, P.O., Divakar, P.K., Shenoy, B.D., Castañeda-Ruiz, R.F., Somrithipol, S., Lateef, A.A., Karunarathna, S.C., Tibpromma, S., Mortimer, P.E., Wanasinghe, D.N., Phookamsak, R., Xu, J.C., Wang, Y., Tian, F., Alvarado, P., Li, D.W., Kušan, I., Matočec, N., Mešić, A., Tkalčec, Z., Maharachchikumbura, S.S.N., Papizadeh, M., Heredia, G., Wartchow, F., Bakhshi, M., Boehm, E., Youssef, N., Hustad, V.P., Lawrey, J.D., Santiago, A.L.C.M.A., Bezerra, J.D.P., Souza-Motta, C.M., Firmino, A.L., Tian, Q., Houbraken, J., Hongsanan, S., Tanaka, K., Dissanayake, A.J., Monteiro, J.S., Grossart, H.P., Suija, A., Weerakoon, G., Etayo, J., Tsurykau, A., Vázquez, V., Mungai, P., Damm, U., Li, Q.R., Zhang, H., Boonmee, S., Lu, Y.Z., Becerra, A.G., Kendrick, B., Brearley, F.Q., Motiejűnaitë, J., Sharma, B., Khare, R., Gaikwad, S., Wijesundara, D.S.A., Tang, L.Z., He, M.Q., Flakus, A., Rodriguez-Flakus, P., Zhurbenko, M.P., McKenzie, E.H.C., Stadler, M., Bhat, D.J., Liu, J.K., Raza, M., Jeewon, R., Nassonova, E.S., Prieto, M., Jayalal, R.G.U., Erdoðdu, M., Yurkov, A., Schnittler, M., Shchepin, O.N., Novozhilov, Y.K., Silva-Filho, A.G.S., Gentekaki, E., Liu, P., Cavender, J.C., Kang, Y., Mohammad, S., Zhang, L.F., Xu, R.F., Li, Y.M., Dayarathne, M.C., Ekanayaka, A.H., Wen, T.C., Deng, C.Y., Pereira, O.L., Navathe, S., Hawksworth, D.L., Fan, X.L., Dissanayake, L.S., Kuhnert, E., Grossart, H.P. & Thines, M. (2020) Outline of Fungi and fungus-like taxa. Mycosphere 11: 1060–1456. https://doi.org/10.5943/mycosphere/11/1/8
  76. Wijayawardene, N.N., Hyde, K.D., Dai, D.Q., Sánchez-García, M., Goto, B.T., Saxena, R.K., Erdoğdu, M., Selçuk, F., Rajeshkumar, K.C., Aptroot, A., Błaszkowski, J., Boonyuen, N., da Silva, G.A., de Souza, F.A., Dong,W., Ertz, D., Haelewaters, D., Jones, E.B.G., Karunarathna, S.C., Kirk, P.M., Kukwa, M., Kumla, J., Leontyev, D.V., Lumbsch, H.T., Maharachchikumbura, S.S.N., Marguno, F., Martínez-Rodríguez, P., Mešić, A., Monteiro, J.S., Oehl, F., Pawłowska, J., Pem, D., Pfliegler, W.P., Phillips, A.J.L., Pošta, A., He, M.Q., Li, J.X., Raza, M., Sruthi, O.P., Suetrong, S., Suwannarach, N., Tedersoo, L., Thiyagaraja, V., Tibpromma, S., Tkalčec, Z., Tokarev, Y.S., Wanasinghe, D.N., Wijesundara, D.S.A., Wimalaseana, S.D.M.K., Madrid, H., Zhang, G.Q., Gao, Y., Sánchez-Castro, I., Tang, L.Z., Stadler, M., Yurkov, A. & Thines, M. (2022) Outline of Fungi and fungus-like taxa – 2021. Mycosphere 13: 53–453. https://doi.org/10.5943/mycosphere/13/1/2
  77. Yu, X.D., Zhang, S.N., Cheewangkoon, R. & Liu, J.K. (2021) Additions to Occultibambusaceae (Pleosporales, Dothideomycetes): Unrevealing palmicolous fungi in China. Diversity 13: 516. https://doi.org/10.3390/d13110516
  78. Yu, X.D., Zhang, S.N. & Liu, J.K. (2022) Morpho-Phylogenetic evidence reveals novel Pleosporalean taxa from Sichuan Province, China. Journal of Fungi 8: 720. https://doi.org/10.3390/jof8070720
  79. Zhang, H., Li, J., Zhou, H., Chen, Z., Song, G., Peng, Z., Pereira, A.P., Silva, M.C. & Varzea, V.M. (2014) Arabica coffee production in the Yunnan Province of China. In: Proceedings of the 24th International Conference on Coffee Science (ASIC).
  80. Zhang, Y., Crous, P.W., Schoch, C.L. & Hyde, K.D. (2012) Pleosporales. Fungal Diversity 53: 1–221. https://doi.org/10.1007/s13225-011-0117-x
  81. Zhang, S., Liu, X., Wang, X., Gao, Y. & Yang, Q. (2021) Evaluation of coffee ecological adaptability using Fuzzy, AHP, and GIS in Yunnan Province, China. Arabian Journal of Geosciences 14: 1366. https://doi.org/10.1007/s12517-021-07795-9
  82. Zhaxybayeva, O. & Gogarten, J.P. (2002) Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. BioMed Central genomics 3: 1–4. https://doi.org/10.1186/1471-2164-3-4