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Issue: Vol. 607 No. 5: 14 Aug. 2023
Type: Article
Published: 2023-08-14
DOI: 10.11646/phytotaxa.607.5.2
Page range: 273-290
Abstract views: 113
PDF downloaded: 15

A phylogenetic reappraisal of Excipulariopsis narsapurensis in Wiesneriomycetaceae, Tubeufiales

National Fungal Culture Collection of India (NFCCI); Biodiversity and Palaeobiology (Fungi) Gr.; MACS Agharkar Research Institute; G. G. Agarkar Road; Pune; 411 004; Maharashtra; India
Department of Botany; Ramnarain Ruia Autonomous College of Arts; Science and Commerce; Dadar East; Matunga; 400 019; Mumbai; Maharashtra; India
National Fungal Culture Collection of India (NFCCI); Biodiversity and Palaeobiology (Fungi) Gr.; MACS Agharkar Research Institute; G. G. Agarkar Road; Pune; 411 004; Maharashtra; India; Faculty of Science; Savitribai Phule Pune University; Pune; 411 007; Maharashtra; India
Department of Plant Pathology; Punjab Agricultural University; Ludhiana; Punjab-141 004
Patanjali Herbal Research Department; Patanjali Research Institute; Haridwar; Uttharakhand; 249405; India
Department of Botany; Ramnarain Ruia Autonomous College of Arts; Science and Commerce; Dadar East; Matunga; 400 019; Mumbai; Maharashtra; India
Center for Yunnan Plateau Biological Resources Protection and Utilization; College of Biological Resource and Food Engineering; Qujing Normal University; Qujing; Yunnan; 655011; P. R. China; Section of Genetics; Institute for Research and Development in Health and Social Care; No: 393/3; Lily Avenue; Off Robert Gunawardane Mawatha; Battaramulla 10120; Sri Lanka
Center for Yunnan Plateau Biological Resources Protection and Utilization; College of Biological Resource and Food Engineering; Qujing Normal University; Qujing; Yunnan; 655011; P. R. China
Center for Yunnan Plateau Biological Resources Protection and Utilization; College of Biological Resource and Food Engineering; Qujing Normal University; Qujing; Yunnan; 655011; P. R. China
hyphomycetes phylogeny taxonomy Western Ghats Wiesneriomycetaceae India Fungi

Abstract

The monotypic genus Excipulariopsis, with type species E. narsapurensis, was established based on the emended generic characteristics of Excipularia narsapurensis. Excipulariopsis has non-cupulated superficial conidiomata arising directly from stroma surrounded by thick walled dark brown subulate setae. The conidia are dark brown, broadly fusoid, having thick septa and truncate base. Phylogenetic analyses using ITS, LSU, TEF1α and RPB2 sequences positioned Excipulariopsis allied to Speiropsis in the family Wiesneriomycetaceae, as a sister family to Tubeufiaceae within Tubeufiales. This study resolved a long-standing ambiguity about the phylogenetic status of this unique sporodochial setose hyphomycetes from India.

 

References

  1. Aljanabi, S.M. & Martinez, I. (1997) Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Research 25: 4692–4693. https://doi.org/10.1093/nar/25.22.4692
  2. Bezerra, J.D., Oliveira, R.J., Paiva, L.M., Silva, G.A., Groenewald, J.Z., Crous, P.W. & Souza-Motta, C.M. (2017) Bezerromycetales and Wiesneriomycetales ord. nov. (Class Dothideomycetes), with two novel genera to accommodate endophytic fungi from Brazilian cactus. Mycological Progress 16: 297–309. https://doi.org/10.1007/s11557-016-1254-0
  3. Bhunjun, C.S., Dong, Y., Jayawardena, R.S., Jeewon, R., Phukhamsakda, C., Bundhun, D., Hyde, K.D. & Sheng, J. (2020) A polyphasic approach to delineate species in Bipolaris. Fungal Diversity 102: 225–256. https://doi.org/10.1007/s13225-020-00446-6
  4. Boonmee, S., Ekanayaka, A.H., Hyde, K.D., Huseyin, E., Ekici, K. & Selçuk, F. (2016) Phylogenetic placement of Neorhamphoria garethjonesii gen. et sp. nov. (Tubeufiales, genus incertae sedis). Mycosphere 7 (9): 1447–1457. https://doi.org/10.5943/mycosphere/7/9/16
  5. Boonmee, S., Rossman, A.Y., Liu, J.K., Li, W.J., Dai, D.Q., Bhat, J.D., Jones, E.G., McKenzie, E.H., Xu, J.C. & Hyde, K.D. (2014) Tubeufiales, ord. nov., integrating sexual and asexual generic names. Fungal Diversity 68: 239–298. https://doi.org/10.1007/s13225-014-0304-7
  6. Boonmee, S., Zhang, Y., Chomnunti, P., Chukeatirote, E., Tsui, C.K., Bahkali, A.H. & Hyde, K.D. (2011) Revision of lignicolous Tubeufiaceae based on morphological reexamination and phylogenetic analysis. Fungal Diversity 51: 63–102. https://doi.org/10.1007/s13225-011-0147-4
  7. Brahamanage, R.S., Lu, Y.Z., Bhat, D.J., Wanasinghe, D.N., Yan, J.Y., Hyde, K.D. & Boonmee, S. (2017) Phylogenetic investigations on freshwater fungi in Tubeufiaceae (Tubeufiales) reveals the new genus Dictyospora and new species Chlamydotubeufia aquatica and Helicosporium flavum. Mycosphere 8: 917–933. https://doi.org/10.5943/mycosphere/8/7/8
  8. Chaiwan, N., Lu, Y.Z., Tibpromma, S., Bhat, D.J., Hyde, K.D. & Boonmee, S. (2017) Neotubeufia gen. nov. and Tubeufia guangxiensis sp. nov. (Tubeufiaceae) from freshwater habitats. Mycosphere 8: 1443–1456. https://doi.org/10.5943/mycosphere/8/9/9
  9. Chethana, K.T., Manawasinghe, I.S., Hurdeal, V.G., Bhunjun, C.S., Appadoo, M.A., Gentekaki, E., Raspé, O., Promputtha, I. & Hyde, K.D. (2021) What are fungal species and how to delineate them? Fungal Diversity 109 (1): 1–25. https://doi.org/10.1007/s13225-021-00483-9
  10. Crous, P.W., Wingfield, M.J., Richardson, D.M., Leroux, J.J., Strasberg, D., Edwards, J., Roets, F., Hubka, V., Taylor, P.W.J., Heykoop, M., Martín, M.P., Moreno, G., Sutton, D.A., Wiederhold, N.P., Barnes, C.W., Carlavilla, J.R., Gené, J., Giraldo, A., Guarnaccia, V., Guarro, J., Hernández-Restrepo, M., Kolařík, M., Manjón, J.L., Pascoe, I.G., Popov, E.S., Sandoval-Denis, M., Woudenberg, J.H.C., Acharya, K., Alexandrova, A.V., Alvarado, P., Barbosa, R.N., Baseia, I.G., Blanchette, R.A., Boekhout, T., Burgess, T.I., Cano-Lira, J.F., Čmoková, A., Dimitrov, R.A., Dyakov, M.Yu., Dueñas, M., Dutta, A.K., Esteve-Raventós, F., Fedosova, A.G., Fournier, J., Gamboa, P., Gouliamova, D.E., Grebenc, T., Groenewald, M., Hanse, B., Hardy, G.E.ST.J., Held, B.W., Jurjević, Ž, Kaewgrajang, T., Latha, K.P.D., Lombard, L., Luangsa-ard, J.J., Lysková, P., Mallátová, N., Manimohan, P., Miller, A.N., Mirabolfathy, M., Morozova, O.V., Obodai, M., Oliveira, N.T., Ordóñez, M.E., Otto, E.C., Paloi, S., Peterson, S.W., Phosri, C., Roux, J., Salazar, W.A., Sánchez, A., Sarria, G.A., Shin, H.-D., Silva, B.D.B., Silva, G.A., Smith, M.TH., Souza-Motta, C.M., Stchigel, A.M., Stoilova-Disheva, M.M., Sulzbacher, M.A., Telleria, M.T., Toapanta, C., Traba, J.M., Valenzuela-Lopez, N., Watling, R. & Groenewald, J.Z. (2016) Fungal Planet description sheets: 400–468. Persoonia 36 (1): 316–458. https://doi.org/10.3767/003158516X692185
  11. Dayarathne, M.C., Boonmee, S., Braun, U., Crous, P.W., Daranagama, D.A., Dissanayake, A.J., Ekanayaka, H., Jayawardena, R., Jones, E.B.G., Maharachchikumbura, S.S.N., Perera, R.H., Phillips, A.J.L., Stadler, M., Thambugala, K.M., Wanasinghe, D.N., Zhao, Q., Hyde, K.D. & Jeewon, R. (2016) Taxonomic utility of old names in current fungal classification and nomenclature: Conflicts, confusion & clarifications. Mycosphere 7 (11): 1622–1648. https://doi.org/10.5943/mycosphere/7/11/2
  12. Doilom, M., Dissanayake, A.J., Wanasinghe, D.N., Boonmee, S., Liu, J.K., Bhat, D.J., Taylor, J.E., Bahkali, A.H., McKenzie, E.H.C. & Hyde, K.D. (2017) Microfungi on Tectona grandis (teak) in Northern Thailand. Fungal Diversity 82: 107–182. https://doi.org/10.1007/s13225-016-0368-7
  13. Duong, L.M., Lumyong, S., Hyde, K.D. & Jeewon, R. (2004) Emarcea castanopsidicola gen. et sp. nov. from Thailand, a new xylariaceous taxon based on morphology and DNA sequences. Studies in Mycology 50: 253–260.
  14. Goh, T.K. & Kuo, C.H. (2018) A new species of Helicoön from Taiwan. Phytotaxa 346: 141–156. https://doi.org/10.11646/phytotaxa.346.2.2
  15. Gomdola, D., Bhunjun, C.S., Hyde, K.D., Jeewon, R., Pem, D. & Jayawardena, R.S. (2022) Ten important forest fungal pathogens: a review on their emergence and biology. Mycosphere 13 (1): 612–671. https://doi.org/10.5943/mycosphere/13/1/6
  16. Hall, T.A. (1999) BioEdit: a user- friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98.
  17. Hawksworth, D.L. & Lücking, R. (2017) Fungal diversity revisited: 2.2 to 3.8 million species. Microbiology spectrum 5 (4): 5–4. https://doi.org/10.1128/microbiolspec.FUNK-0052-2016
  18. Hongsanan, S., Hyde, K.D., Phookamsak, R., Wanasinghe, D.N., McKenzie, E.H.C., Sarma, V.V., Boonmee, S., Lücking, R., Bhat, D.J., Liu, N.G., Tennakoon, D.S. Pem, D., Karunarathna, A., Jiang, S.H., Jones, E.B.G., Phillips, A.J.L., Manawasinghe, I.S., Tibpromma, S., Jayasiri, S.C., Sandamali, D.S., Jayawardena, R.S., Wijayawardene, N.N., Ekanayaka, A.H., , Jeewon, R., Lu, Y.Z., Dissanayake, A.J., Zeng, X.Y., Luo, Z.L., Tian, Q., Phukhamsakda, C., Thambugala, K.M., Dai, D.Q., Chethana, K.W.T., Samarakoon, M.C., Ertz, D., Bao, D.F., Doilom, M., Liu, J.K., PérezOrtega, S., Suija, A., Senwanna, C., Wijesinghe, S.N., Konta, S., Niranjan, M., Zhang, S.N., Ariyawansa, H.A., Jiang, H.B., Zhang, J.F., Norphanphoun, C., de Silva, N.I., Thiyagaraja, V., Zhang, H., Bezerra, J.D.P, Miranda-González, R., Aptroot, A., Kashiwadani, H., Harishchandra, D., Sérusiaux, E., Aluthmuhandiram, J.V.S., Abeywickrama, P.D., Devadatha, B., Wu, H.X., Moon, K.H., Gueidan, C., Schumm, F., Bundhun, D., Mapook, A., Monkai, J., Chomnunti, P., Suetrong, S., Chaiwan, N., Dayarathne, M.C., Yang, J., Rathnayaka, A.R., Bhunjun, C.S., Xu, J.C., Zheng, J.S., Liu, G., Feng, Y. & Xie, N. (2020) Refined families of dothideomycetes: Dothideomycetidae and pleosporomycetidae. Mycosphere 11 (1): 1553–2107. https://doi.org/10.5943/mycosphere/11/1/13
  19. Hongsanan, S., Jeewon, R., Purahong, W., Xie, N., Liu, J.K., Jayawardena, R.S., Ekanayaka, A.H., Dissanayake, A., Raspé, O., Hyde, K.D. & Stadler, M., (2018) Can we use environmental DNA as holotypes?. Fungal Diversity 92: 1–30. https://doi.org/10.1007/s13225-018-0404-x
  20. Hyde, K.D., Dong, Y., Phookamsak, R., Jeewon, R., Bhat, D.J., Jones, E.B.G., Liu, N.G., Abeywickrama, P.D., Mapook, A., Wei, D., Perera, R.H., Manawasinghe, I.S., Pem, D., Bundhun, D., Karunarathna, A., Ekanayaka, A.H., Bao, D., Li, J., Samarakoon, M.C., Chaiwan, N., Lin, C., Phutthacharoen, K., Zhang, S., Senanayake, I.C., Goonasekara, I.D., Thambugala, K.M., Phukhamsakda, C., Tennakoon, D.S., Jiang, H.B., Yang, J., Zeng, M., Huanraluek, N., Liu, J.K., Wijesinghe, S.N., Tian, Q., Tibpromma, S., Brahmanage, R.S., Boonmee, S., Huang, S.K., Thiyagaraja, V., Lu, Y.Z., Jayawardena, R.S., Dong, W., Yang, E.F., Singh, S.K., Singh, S.M., Rana, S., Lad, S.S., Anand, G., Devadatha, B., Niranjan, M., Sarma, V.V., Liimatainen, K., Aguirre-Hudson, B., Niskanen, T., Overall, A., Alvarenga, R.L.M., Gibertoni, T.B., Pfliegler, W.P., Horváth, E., Imre, A., Alves, A.L., Santos, A.C.S., Tiago, P.V., Bulgakov, T.S., Wanasinghe, D.N., Bahkali, A.H., Doilom, M., Elgorban, A.M., Maharachchikumbura, S.S.N., Rajeshkumar, K.C., Haelewaters, D., Mortimer, P.E., Zhao, Q., Lumyong, S., Xu, J. & Sheng, J. (2020) Fungal diversity notes 1151–1276: taxonomic and phylogenetic contributions on genera and species of fungal taxa. Fungal diversity 100: 5–277. https://doi.org/10.1007/s13225-020-00439-5
  21. Hyde, K.D., Jones, E.G., Liu, J.K., Ariyawansa, H., Boehm, E., Boonmee, S., Braun, U., Chomnunti, P., Crous, P.W., Dai, D.Q. & Diederich, P. (2013) Families of Dothideomycetes. Fungal Diversity 63: 1–313. http://dx.doi.org/10.1007/s13225-013-0263-4
  22. Hyde, K.D., Norphanphoun, C., Chen, J., Dissanayake, A.J., Doilom, M., Hongsanan, S., Jayawardena, R.S., Jeewon, R., Perera, R.H., Thongbai, B. & Wanasinghe, D.N. (2018) Thailand’s amazing diversity: up to 96% of fungi in northern Thailand may be novel. Fungal diversity 93: 215–239. https://doi.org/10.1007/s13225-018-0415-7
  23. Hyde, K.D., Xu, J., Rapior, S., Jeewon, R., Lumyong, S., Niego, A.G.T., Abeywickrama, P.D., Aluthmuhandiram, J.V., Brahamanage, R.S., Brooks, S. & Chaiyasen, A. (2019) The amazing potential of fungi: 50 ways we can exploit fungi industrially. Fungal Diversity 97: 1–136. https://doi.org/10.1007/s13225-019-00430-9
  24. Jayasiri, S.C., Hyde, K.D., Ariyawansa, H.A., Bhat, J., Buyck, B., Cai, L., Dai, Y.C., Abd-Elsalam, K.A., Ertz, D., Hidayat, I., Jeewon, R., Jones, E.B.G., Bahkali, A.H., Karunarathna, S.C., Liu, J.K., Luangsa-ard, J.J., Lumbsch, H.T., Maharachchikumbura, S.S.N., McKenzie, E.H.C., Moncalvo, J.M., Nejhad, M.G., Nilsson, H., Pang, K.L., Pereira, O.L., Phillips, A.J.L., Raspé, O., Rollins, A.W., Romero, A.I., Etayo, J., Selçuk, F., Stephenson, S.L., Suetrong, S., Taylor, J.E., Tsui, C.K.M., Vizzini, A., Abdel-Wahab, M.A., Wen, T., Boonmee, S., Dai, D.Q., Daranagama, D.A., Dissanayake, A.J., Ekanayaka, A.H., Fryar, S.C., Hongsanan, S., Jayawardena, R.S., Li, W., Perera, R.H., Phookamsak, R., de Silva, N.I., Thambugala, K.M., Tian, Q., Wijayawardene, N.N., Zhao, R., Zhao, Q., Kang, J. & Promputtha, I. (2015) The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. Fungal diversity 74: 3–18. https://doi.org/10.1007/s13225-015-0351-8
  25. Jayasiri, S.C., Hyde, K.D., Jones, E.B.G., McKenzie, E.H.C., Jeewon, R., Phillips, A.J.L., Bhat, D.J., Wanasinghe, D.N., Liu, J.K., Lu, Y.Z. & Kang, J.C. (2019) Diversity, morphology and molecular phylogeny of Dothideomycetes on decaying wild seed pods and fruits. Mycosphere 10: 1–186. https://doi.org/10.5943/mycosphere/10/1/1
  26. Jayawardena, R.S., Hyde, K.D., Jeewon, R., Li, X.H., Liu, M. & Yan, J.Y. (2016) Mycosphere Essay 6: Why is it important to correctly name Colletotrichum species. Mycosphere 7 (8): 1076–1092. https://doi.org/10.5943/mycosphere/si/2c/1
  27. Jeewon, R. & Hyde, K.D. (2016) Establishing species boundaries and new taxa among fungi: recommendations to resolve taxonomic ambiguities. Mycosphere 7 (11): 1669–1677. https://doi.org/10.5943/mycosphere/7/11/4
  28. Jeewon, R., Cai, L., Liew, E.C.Y., Zhang, K.Q. & Hyde, K.D. (2003) Dyrithiopsis lakefuxianensis gen. et sp. nov. from Fuxian Lake, Yunnan, China, and notes on the taxonomic confusion surrounding Dyrithium. Mycologia 95 (5): 911–920. https://doi.org/10.1080/15572536.2004.11833050
  29. Jeewon, R., Luckhun, A.B., Bhoyroo, V., Sadeer, N.B., Mahomoodally, M.F., Rampadarath, S., Puchooa, D., Sarma, V.V., Durairajan, S.S.K. & Hyde, K.D. (2019) Pharmaceutical potential of marine fungal endophytes. In: Endophytes and Secondary Metabolites. pp. 1–23. https://doi.org/10.1007/978-3-319-76900-4_6-1
  30. Jeewon, R., Subramanya, R. & Hyde, K.D. (2008) Microorganisms as potential biotechnological and biocontrol agents. In: Text Book on Molecular Biotechnology (Basics, Applications and Modern Methods).
  31. Jeewon, R., Wanasinghe, D.N., Rampadaruth, S., Puchooa, D., Li-Gang, Zhou., AiRong, Liu. & Hong-Kai, Wang. (2017) Nomenclatural and identification pitfalls of endophytic mycota based on DNA sequence analyses of ribosomal and protein genes phylogenetic markers: A taxonomic dead end? Mycosphere 8 (10): 1802–1817. https://doi.org/10.5943/mycosphere/8/10/7
  32. Jeewon, R., Yeung, Q.S., Wannasinghe, D.N., Rampadarath, S., Puchooa, D., Wang, H.K. & Hyde, K.D. (2018) Hidden mycota of pine needles: Molecular signatures from PCR-DGGE and Ribosomal DNA phylogenetic characterization of novel phylotypes. Scientific reports 8 (1): 18053. https://doi.org/10.1038/s41598-018-36573-z
  33. Kalyaanamoorthy, S., Minh, B.Q., Wong, T.K.F., von Haeseler, A. & Jermiin, L.S. (2017) ModelFinder: Fast model selection for accurate phylogenetic estimates. Nat Methods 14: 587–589. https://doi.org/10.1038/nmeth.4285
  34. Katoh, K., Rozewicki, J. & Yamada, K.D. (2017) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20 (4): 1160–1166. https://doi.org/10.1093/bib/bbx108
  35. Koorders, S.H. (1907) Botanische Untersuchungen. Verhandelingen Koninklijke Nederlandse Akademie van Wetenschappen Afdeling Natuurkunde 13 (4): 1–264.
  36. Kornerup, A. & Wanscher, J.H. (1978) Methuen Handbook of Colour. 3rd edn. London: E. Methuen, London, 252 pp.
  37. Kumar, S., Stecher, G. & Tamura, K. (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular biology and evolution 33 (7): 1870–1874. https://doi.org/10.1093/molbev/msw054
  38. Lad, S., Rajeshkumar, K.C., Sruthi, O.P., Ashtekar, N., Ansil, A.P., Verma, R.K. & Wijayawardene, N.N. (2022) Resolving the phylogenetic placement of Gangliostilbe in the family Xenospadicoidaceae (Xenospadicoidales). MycoAsia 2022/01. https://doi.org/10.59265/mycoasia.2022-01
  39. Larsson, A. (2014) Aliview a fast and lightweight alignment viewer and editor for large data sets. Bioinformatics 30 (22): 3267–3278. https://doi.org/10.1093/bioinformatics/btu531
  40. Liu, J.K., Hyde, K.D., Jeewon, R., Phillips, A.J., Maharachchikumbura, S.S., Ryberg, M., Liu, Z.Y. & Zhao, Q. (2017) Ranking higher taxa using divergence times: a case study in Dothideomycetes. Fungal Diversity 84: 75–99. https://doi.org/10.1007/s13225-017-0385-1
  41. Liu, N.G., Lu, Y.Z., Bhat, D.J., McKenzie, E.H., Lumyong, S., Jumpathong, J. & Liu, J.K. (2019) Kevinhydea brevistipitata gen. et sp. nov. and Helicoma hydei sp. nov., (Tubeufiaceae) from decaying wood habitats. Mycological progress 18: 671–682. https://doi.org/10.1007/s11557-019-01480-8
  42. Liu, Y.J., Whelen, S. & Hall, B.D. (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Molecular biology and evolution 16 (12): 1799–1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092
  43. Lu, Y.Z., Boonmee, S., Bhat, D.J., Hyde, K.D. & Kang, J.C. (2017) Helicosporium luteosporum sp. nov. and Acanthohelicospora aurea (Tubeufiaceae, Tubeufiales) from terrestrial habitats. Phytotaxa 319: 241–253. https://doi.org/10.11646/phytotaxa.319.3.3
  44. Lu, Y.Z., Boonmee, S., Liu, J.K., Hyde, K.D., McKenzie, E.H., Eungwanichayapant, P.D. & Kang, J.C. (2018a) Multi-gene phylogenetic analyses reveals Neohelicosporium gen. nov. and five new species of helicosporous hyphomycetes from aquatic habitats. Mycological Progress 17: 631–646. https://doi.org/10.1007/s11557-017-1366-1
  45. Lu, Y.Z., Liu, J.K., Hyde, K.D., Jeewon, R., Kang, J.C., Fan, C., Boonmee, S., Bhat, D.J., Luo, Z.L., Lin, C.G. & Eungwanichayapant, P.D. (2018b) A taxonomic reassessment of Tubeufiales based on multi-locus phylogeny and morphology. Fungal Diversity 92: 131–344. https://doi.org/10.1007/s13225-018-0411-y
  46. Luo, Z.L., Bhat, D.J., Jeewon, R., Boonmee, S., Bao, D.F., Zhao, Y.C., Chai, H.M., Su, H.Y., Su, X.J. & Hyde, K.D. (2017) Molecular phylogeny and morphological characterization of asexual fungi (Tubeufiaceae) from freshwater habitats in Yunnan, China. Cryptogamie Mycologie 38 (1): 27–53. https://doi.org/10.7872/crym/v38.iss1.2017.27
  47. Minh, B.Q., Schmidt, H.A., Chernomor, O., Schrempf, D., Woodhams, M.D., Von Haeseler, A. & Lanfear, R. (2020) IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Molecular biology and evolution 37 (5): 1530–1534. https://doi.org/10.1093/molbev/msaa015
  48. Morgulis, A., Coulouris, G., Raytselis, Y., Madden, T.L., Agarwala, R. & Schäffer, A.A. (2008) Database indexing for production MegaBLAST searches. Bioinformatics 24 (16): 1757–1764. https://doi.org/10.1093/bioinformatics/btn322
  49. Nguyen, L.T., Schmidt, H.A., von Haeseler, A. & Minh, B.Q. (2015) IQ-TREE: a fast and efective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32 (1): 268–274. https://doi.org/10.1093/molbev/msu300
  50. Nawawi, A. & Webster, J. (1982) Phalangispora constricta gen. et sp.nov., a sporodochial hyphomycete with branched conidia. Transactions of the British Mycological Society 79 (1): 65–68. https://doi.org/10.1016/S0007-1536(82)80191-5
  51. Pem, D., Hyde, K.D., Doilom, M., Camporesi, E., Hongsanan, S., Rampadarath, S., Bhoyroo, V. & Jeewon, R. (2019) Multigene phylogenetic analyses to establish new Valsaria species and taxonomic significance of spore ornamentation. PloS one 14 (6): e0217982. https://doi.org/10.1371/journal.pone.0217982
  52. Pem, D., Jeewon, R., Chethana, K.W.T., Hongsanan, S., Doilom, M., Suwannarach, N. & Hyde, K.D. (2021) Species concepts of Dothideomycetes: classification, phylogenetic inconsistencies and taxonomic standardization. Fungal Diversity 109 (1): 283–319. https://doi.org/10.1007/s13225-021-00485-7
  53. Phadke, C.H. & Rao, V.G. (1980) Pseudogliophragma, a new genus of Hyphomycetes. Norwegian journal of botany 27: 127–130.
  54. Phookamsak, R., Lu, Y.Z., Hyde, K.D., Jeewon, R., Li, J.F., Doilom, M., Boonmee, S. & Promputtha, I. (2018) Phylogenetic characterization of two novel Kamalomyces species in Tubeufiaceae (Tubeufiales). Mycological Progress 17: 647–660. https://doi.org/10.1007/s11557-017-1365-2
  55. Pinnoi, A., Jeewon, R., Sakayaroj, J., Hyde, K.D. & Jones, E.G. (2007) Berkleasmium crunisia sp. nov. and its phylogenetic affinities to the Pleosporales based on 18S and 28S rDNA sequence analyses. Mycologia 99 (3): 378–384. https://doi.org/10.3852/mycologia.99.3.378
  56. Pratibha, J., Bhat, D.J. & Prabhugaonkar, A. (2016) Molecular phylogeny of Speiropsis pedatospora. Mycosphere 7 (5): 679–686. https://doi.org/10.5943/mycosphere/7/5/12
  57. Pratibha, J., Nguyen, H.D., Mel’nik, V.A., Bhat, D.J., White, G.P. & Seifert, K.A. (2014) Lectotypification, epitypification, and molecular phylogeny of the synnematous hyphomycete Pseudogliophragma indicum, the second genus in the Wiesneriomycetaceae. Mycoscience 56 (4): 387–395. https://doi.org/10.1016/j.myc.2014.12.002
  58. Promputtha, I. & Miller, A.N. (2010) Three new species of Acanthostigma (Tubeufiaceae, Dothideomycetes) from Great Smoky Mountains National Park. Mycologia 102: 574–587. https://doi.org/10.3852/09-051
  59. Rajeshkumar, K.C. & Sharma, R. (2013) Tamhinispora a new genus belongs to family Tubeufiaceae from the Western Ghats, India based on morphology and phylogenetic analysis. Mycosphere 4 (2): 165–174. https://doi.org/10.5943/mycosphere/4/2/2
  60. Rajeshkumar, K.C. & Singh, S.K. (2012) Manoharachariella indica sp. nov. from the Western Ghats, India. Mycotaxon 120 (1): 43–48. https://doi.org/10.5248/120.43
  61. Rajeshkumar, K.C., Bhat, D.J., Lad, S.S., Wijayawardene, N.W., Singh, S.K., Pandkar, M.R., Maurya, D.K., Ashtekar, N.D. & Hyde, K.D. (2018) Morphology and phylogeny of Tamhinispora srinivasanii sp. nov. (Tubeufiaceae) from northern Western Ghats, India. Phytotaxa 346 (1): 113–120. https://doi.org/10.11646/phytotaxa.346.1.7
  62. Rajeshkumar, K.C., Braun, U., Groenewald, J.Z., Lad, S.S., Ashtekar, N., Fatima, S. & Anand, G. (2021) Phylogenetic placement and reassessment of Asperisporium pongamiae as Pedrocrousiella pongamiae gen. et comb. nov. (Mycosphaerellaceae). Fungal Systematics and Evolution 7 (1): 165–176. https://doi.org/10.3114/fuse.2021.07.08
  63. Rajeshkumar, K.C., Crous, P.W., Groenewald, J.Z. & Seifert, K.A. (2016) Resolving the phylogenetic placement of Porobeltraniella and allied genera in the Beltraniaceae. Mycological Progress 15: 1119–1136. https://doi.org/10.1007/s11557-016-1234-4
  64. Rajeshkumar, K.C., Hyde, K.D., Wijayawardene, N.N., Madrid, H., Lad, S.S., Boonmee, S. & Fatima, S. (2019) Tubeufia sahyadriensis (Tubeufiaceae), a new dictyosporous anamorph from the Western Ghats, India. Phytotaxa 423 (3): 171–181. https://doi.org/10.11646/phytotaxa.423.3.5
  65. Rambaut, A. (2010) FigTree v1. 3.1. Institute of Evolutionary Biology. University of Edinburgh, Edinburgh, United Kingdom. Available from: http://tree.bio.ed.ac.uk/software/figtree/ (accessed 14 August 2023)
  66. Rampadarath, S., Puchooa, D. & Jeewon, R. (2016) Jatropha curcas L: Phytochemical, antimicrobial and larvicidal properties. Asian Pacific Journal of Tropical Biomedicine 6 (10): 858–865. https://doi.org/10.1016/j.apjtb.2016.01.019
  67. Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic biology 61 (3): 539–542. https://doi.org/10.1093/sysbio/sys029
  68. Rossman, A.Y., Crous, P.W., Hyde, K.D., Hawksworth, D.L., Aptroot, A., Bezerra, J.L., Bhat, J.D., Boehm, E., Braun, U., Boonmee, S. & Camporesi, E. (2015) Recommended names for pleomorphic genera in Dothideomycetes. IMA fungus 6 (2): 507–523. https://doi.org/10.5598/imafungus.2015.06.02.14
  69. Santos, T.A.B. (2015) Relações Filogenéticas dos Complexos Stachybotrys-Memmoniella e Phalangispora-Speiropsis-Wiesneriomyces. Master’s thesis, Universidade Federal de Pernambuco, Brazil.
  70. Schoch, C.L., Shoemaker, R.A., Seifert, K.A., Hambleton, S., Spatafora, J.W. & Crous, P.W. (2006) A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia 98 (6): 1041–1052. https://doi.org/10.3852/mycologia.98.6.1041
  71. Seifert, K.A. & Gams, W. (2011) The genera of Hyphomycetes–2011 update. Persoonia 27 (1): 119–129. https://doi.org/10.3767/003158511x617435
  72. Senanayake, I.C., Jeewon, R., Chomnunti, P., Wanasinghe, D.N., Norphanphoun, C., Karunarathna, A., Pem, D., Perera, R.H., Camporesi, E., McKenzie, E.H. & Hyde, K.D. (2018) Taxonomic circumscription of Diaporthales based on multigene phylogeny and morphology. Fungal Diversity 93: 241– 443. https://doi.org/10.1007/s13225-018-0410-z
  73. Senanayake, I.C., Rathnayaka, A.R., Marasinghe, D.S., Calabon, M.S., Gentekaki, E., Lee, H.B., Hurdeal, V.G., Pem, D., Dissanayake, L.S., Wijesinghe, S.N. & Bundhun, D., (2020) Morphological approaches in studying fungi: Collection, examination, isolation, sporulation and preservation. Mycosphere 11 (1): 2678–2754. https://doi.org/10.5943/mycosphere/11/1/20
  74. Shaw, D.E. & Sutton, B.C. (1985) A new aero-aquatic hyphomycete from Papua New Guinea and Australia. Botanical journal of the Linnean Society 91 (1–2): 25–36. https://doi.org/10.1111/j.1095-8339.1985.tb01131.x
  75. Sivanesan, A. & Hsieh, W.H. (1989) Kentingia and Setocampanula, two new ascomycete genera. Mycological Research 93 (1): 83–90. https://doi.org/10.1016/s0953-7562(89)80141-8
  76. Spooner, B.M. & Kirk, P.M. (1982) Taxonomic notes on Excipularia and Scolicosporium. Transactions of the British Mycological Society 78 (2): 247–257. https://doi.org/10.1016/s0007-1536(82)80007-7
  77. Stamatakis, A. (2014) RAxML Version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312–1313. https://doi.org/10.1093/bioinformatics/btu033
  78. Suetrong, S., Rungjindamai, N., Sommai, S., Rung-Areerate, P., Sommrithipol, S. & Jones, E.G. (2014) Wiesneriomyces a new lineage of Dothideomycetes (Ascomycota) basal to Tubeufiales. Phytotaxa 176 (1): 283–297. https://doi.org/10.11646/phytotaxa.176.1.27
  79. Tanney, J. & Miller, A.N. (2017) Asexual-sexual morph connection in the type species of Berkleasmium. IMA Fungus 8: 99–105 https://doi.org/10.5598/imafungus.2017.08.01.07
  80. Tian, X., Karunarathna, S.C., Xu, R., Lu, Y., Suwannarach, N., Mapook, A., Bao, D., Xu, J. & Tibpromma, S. (2022) Three new species, two new records and four new collections of Tubeufiaceae from Thailand and China. Journal of Fungi 8 (2): 206. https://doi.org/10.3390/jof8020206
  81. Tsui, C.K.M., Berbee, M.L., Jeewon, R. & Hyde, K.D. (2006a) Molecular phylogeny of Dictyosporium and allied genera inferred from ribosomal DNA. Fungal Diversity 21: 157–166.
  82. Tsui, C.K.M., Sivichai, S. & Berbee, M.L. (2006b) Molecular systematics of Helicoma, Helicomyces and Helicosporium and their teleomorphs inferred from rDNA sequences. Mycologia 98 (1): 94–104. https://doi.org/10.3852/mycologia.98.1.94
  83. Tubaki, K. (1958) Studies on the Japanese Hyphomycetes. V. Leaf & stem group with a discussion of the classification of the Hyphomycetes and their perfect stages. Journal of the Hattori Botanical Laboratory 20: 142–244.
  84. Vaidya, G., Lohman, D.J. & Meier, R. (2011) SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information. Cladistics 27: 171–180. https://doi.org/10.1111/j.1096-0031.2010.00329.x
  85. Vu, D., Groenewald, M. & De Vries, M. (2019) Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. Studies in mycology 92 (1): 135–154. https://doi.org/10.1016/j.simyco.2018.05.001
  86. Wanasinghe, D.N., Bezerra, J.D., Xu, J. & Mortimer, P.E. (2023) Honghemyces pterolobii, gen. et sp. nov. (Bezerromycetaceae, Tubeufiales), a new ascomycetous fungus from Pterolobium macropterum in Honghe, China. Sydowia 75: 13.
  87. White, T.J., Bruns, T., Lee, J. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR protocols: a guide to methods and applications. Academic Press, San Diego, pp. 315–322. https://doi.org/10.1016/b978-0-12-372180-8.50042-1
  88. Wijayawardene, N.N., Hyde, K.D., Al-Ani, L.K.T., Tedersoo, L., Rajeshkumar, K.C., Zhao, R.L., Aptroot, A., Leontyev, D.V., Saxena, R.K., Tokarev, Y.S., Dai, D.Q., Letcher, P.M., Stephenson, S.L., Ertz, D., Lumbsch, H.T., Haelewaters, D., Bensch, K., Madrid, H., Kukwa, M., Issi, I.V., Lateef, A.A., Phillips, A.J.L., Selbmann, L., Pfiegler, W.P., Horváth, E., Pereira, O.L., Kirk, P.M., Kolaříková, Z., Raja, H.A., Radek, R., Papp, V., Dima, B., Ma, J., Malosso, E., Takamatsu, S., Rambold, G., Gannibal, P.B., Triebel, D., Gautam, A.K., Avasthi, S., Suetrong, S., Timdal, E., Fryar, S.C., Delgado, G., Réblová, M., Doilom, M., Dolatabadi, S., Pawłowska, J., Humber, R.A., Kodsueb, R., Sánchez-Castro, I., Goto, B.T., Silva, D.K.A., de Souza, F.A., Oehl, F., Santos da Silva, G.A., Silva, I.R., Błaszkowski, J., Jobim, K., Maia, L.C., Barbosa, F.R., Fiuza, P.O., Divakar, P.K., Shenoy, B.D., Castañeda-Ruiz, R.F., Somrithipo, S., Karunarathna, S.C., Tibpromma, S., Mortimer, P.E., Wanasinghe, D.N., Phookamsak, R., Xu, J.C., Wang, Y., Fenghua, T., Alvarado, P., Li, D.W., Kušan, I., Matočec, N., Maharachchikumbura, S.S.N., Papizadeh, M., Heredia, G., Wartchow, F., Bakhshi, M., Boehm, E., Youssef, N., Hustad, V.P., Lawrey, J.D., Santiago, ALCMA, Bezerra, J.D.P., Souza-Motta, C.M., Firmino, A.L., Tian, Q., Houbraken, J., Hongsanan, S., Tanaka, K., Dissanayake, A.J., Monteiro, J.S., Grossart, H.P., Suija, A., Weerakoon, G., Etayo, J., Tsurykau, A., Kuhnert, E., Vázquez, V., Mungai, P., Damm, U., Li, Q.R., Zhang, H., Boonmee, S., Lu, Y.Z., Becerra, A.G., Kendrick, B., Brearley, F.Q., Motiejűnaitë, J., Sharma, B., Khare, R., Gaikwad, S., Wijesundara, D.S.A., Tang, L.Z., He, M.Q., Flakus, A., RodriguezFlakus, P., Zhurbenko, M.P., McKenzie, E.H.C., Stadler, M., Bhat, D.J., Liu, J.K., Raza, M., Jeewon, R., Nassonova, E.S., Prieto, M., Jayalal, R.G.U., Yurkov, A., Schnittler, M., Shchepin, O.N., Novozhilov, Y.K., Liu, P., Cavender, J.C., Kang, Y.Q., Mohammad, S., Zhang, L.F., Xu, R.F., Li, Y.M., Dayarathne, M.C., Ekanayaka, A.H., Wen, T.C., Deng, C.Y. & Navathe, S. (2020) Outline of Fungi and fungus-like taxa. Mycosphere 11 (1): 1060–1456.
  89. Wijayawardene, N.N., Hyde, K.D., Rajeshkumar, K.C., Hawksworth, D.L., Madrid, H., Kirk, P.M., Braun, U., Singh, R.V., Crous, P.W., Kukwa, M., Lücking, R., Kurtzman, C.P., Yurkov, A., Haelewaters, D., Aptroot, A., Lumbsch, H.T., Timdal, E., Ertz, D., Etayo, J., Phillips, A.J.L., Groenewald, J.Z., Papizadeh, M., Selbmann, L., Dayarathne, M.C., Weerakoon, G., Jones, E.B.G., Suetrong, S., Tian, Q., Castañeda-Ruiz, R.F., Bahkali, A.H., Pang, K.L., Tanaka, K., Dai, D.Q., Sakayaroj, J., Hujslová, M., Lombard, L., Shenoy, B.D., Suija, A., Maharachchikumbura, S.S.N., Thambugala, K.M., Wanasinghe, D.N., Sharma, B.O., Gaikwad, S., Pandit, G., Zucconi, L., Onofri, S., Egidi, E., Raja, H.A., Kodsueb, R., Cáceres, M.E.S., Pérez-Ortega, S., Fiuza, P.O., Monteiro, J.S., Vasilyeva, L.N., Shivas, R.G., Prieto, M., Wedin, M., Olariaga, I., Lateef, A.A., Agrawal, Y., Fazeli, S.A.S., Amoozegar, M.A., Zhao, G.Z., Pfliegler, W.P., Sharma, G., Oset, M., Abdel-Wahab, M.A., Takamatsu, S., Bensch, K., de-Silva, N.I., Kesel, A.D., Karunarathna, A., Boonmee, S., Pfister, D.H., Lu, Y.Z., Luo, Z.L., Boonyuen, N., Daranagama, D.A., Senanayake, I.C., Jayasiri, S.C., Samarakoon, M.C., Zeng, X.Y., Doilom, D., Quijada, L., Rampadarath, S., Heredia, G., Dissanayake, A.J., Jayawardana, R.S., Perera, R.H., Tang, L.Z., Phukhamsakda, C., Hernández-Restrepo, M., Ma, X., Tibpromma, S., Gusmao, L.F.P., Weerahewa, D. & Karunarathna, S.C. (2017) Notes for genera: Ascomycota. Fungal Diversity 86: 1–594. https://doi.org/10.1007/s13225-017-0386-0
  90. Wijayawardene, N.N., Phillips, A.J.L., Tibpromma, S., Dai, D.Q., Selbmann, L., Monteiro, J.S., Aptroot, A., Flakus, A., Rajeshkumar, K.C., Coleine, C., Pereira, D.S., Fan, X., Zhang, L., Maharachchikumbura, S.S.N., Souza, M.F., Kukwa, M., Suwannarach, N., Rodriguez-Flakus, P., Ashtekar, N., Dauner, L., Tang, L.Z., Jin, X.C. & Karunarathna, S.C. (2021) Looking for the undiscovered asexual taxa: case studies from lesser studied life modes and habitats. Mycosphere 12 (1): 1186–1229. https://doi.org/10.5943/mycosphere/12/1/17
  91. Wijayawardene, N.N., Phillips, A.J.L., Pereira, D.S., Dai, D.Q., Aptroot, A., Monteiro, J.S., Druzhinina, I.S., Cai, F., Fan, X., Selbmann, L., Coleine, C., Castañeda‑Ruiz, R.F., Kukwa, M., Flakus, A., Fiuza, P.O., Kirk, P.M., Rajesh Kumar, K.C., Arachchi, I.S.L., Suwannarach, N., Tang, L.Z., Boekhout, T. , Tan, C.S., Jayasinghe, R.P.P.K. & Thines, M. (2022) Forecasting the number of species of asexually reproducing fungi (Ascomycota and Basidiomycota). Fungal Diversity 114 (1): 463–490. https://doi.org/10.1007/s13225-022-00500-5
  92. Xiao, Y.P., Wen, T.C., Hongsanan, S., Jeewon, R., Luangsa-Ard, J.J., Brooks, S., Wanasinghe, D.N., Long, F.Y. & Hyde, K.D. (2018) Multigene phylogenetics of Polycephalomyces (Ophiocordycipitaceae, Hypocreales), with two new species from Thailand. Scientific Reports 8 (1): 18087. https://doi.org/10.1038/s41598-018-36792-4
  93. Xu, R., Hyde, K.D., Karunarathna, S.C., Xu, J.C., Mortimer, P.E. & Tibpromma, S. (2022) Morphology and multi-gene phylogeny reveal a new fungal genus and species from Hevea brasiliensis latex in Yunnan, China. Phytotaxa 530 (1): 65–76. https://doi.org/10.11646/phytotaxa.530.1.5
  94. Yadav, S.K., Ir, R., Jeewon, R., Doble, M., Hyde, K.D., Kaliappan, I., Jeyaraman, R., Reddi, R.N., Krishnan, J., Li, M. & Durairajan, S.S.K. (2020) A mechanistic review on medicinal mushrooms-derived bioactive compounds: Potential mycotherapy candidates for alleviating neurological disorders. Planta Medica 86 (16): 1161–1175. https://doi.org/10.1055/a-1177-4834
  95. Yang, E.F., Dai, D.Q., Bhat, J.D., Dawoud, T.M., Promputtha, I., Adikaram, N., Stephenson, S.L., Karunarathna, S.C. & Tibpromma, S. (2023) Taxonomic and Phylogenetic Studies of Saprobic Fungi Associated with Mangifera indica in Yunnan, China. Journal of Fungi 9 (6): 680. https://doi.org/10.3390/jof9060680
  96. Zhang, N., Castlebury, L.A., Miller, A.N., Huhndorf, S.M., Schoch, C.L., Seifert, K.A., Rossman, A.Y., Rogers, J.D., Kohlmeyer, J., Volkmann-Kohlmeyer, B. & Sung, G.H. (2006) An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny. Mycologia 98 (6): 1076–1087. https://doi.org/10.3852/mycologia.98.6.1076
  97. Zhang, Y., Crous, P.W., Schoch, C.L. & Hyde, K.D. (2012) Pleosporales. Fungal Diversity 53: 1–221. https://doi.org/10.1007/s13225-011-0117-x
  98. Zhang, Y., Crous, P.W., Schoch, C.L., Bahkali, A.H., Guo, L.D. & Hyde, K.D. (2011) A molecular, morphological and ecological re-appraisal of Venturiales-a new order of Dothideomycetes. Fungal Diversity 51: 249–277. https://doi.org/10.1007/s13225-011-0141-x
  99. Zhao, R.L., Jeewon, R., Desjardin, D.E., Soytong, K. & Hyde, K.D. (2007) Ribosomal DNA phylogenies of Cyathus: is the current infrageneric classification appropriate?. Mycologia 99 (3): 385–395. https://doi.org/10.3852/mycologia.99.3.385