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Issue: Vol. 595 No. 2: 5 May 2023
Type: Article
Published: 2023-05-05
DOI: 10.11646/phytotaxa.595.2.7
Page range: 209-218
Abstract views: 58
PDF downloaded: 5

Elucidating taxonomic status of Goodyera medogensis (Orchidaceae) based on morpho-molecular data

Botanical Survey of India, Central National Herbarium, Acharya Jagadish Chandra Bose Indian Botanic Garden, Howrah 711 103, West Bengal, India.
Orchid Research Centre, Tipi 790 114, Arunachal Pradesh, India.
Botanical Survey of India, Central National Herbarium, Acharya Jagadish Chandra Bose Indian Botanic Garden, Howrah 711 103, West Bengal, India.
Botanical Survey of India, Central National Herbarium, Acharya Jagadish Chandra Bose Indian Botanic Garden, Howrah 711 103, West Bengal, India.
Botanical Survey of India Headquarters, CGO Complex, 3rd MSO Building, Block F (5th and 6th Floor), DF Block, Sector I, Salt Lake City, Kolkata 700 064, West Bengal, India.
Goodyerinae jewel orchid molecular morphology phylogeny variety Monocots

Abstract

Goodyera medogensis H.Z. Tian, Y.H. Tong & B.M. Wang, a recently described species of ‘Jewel orchid’ from China is reduced as a variety under Goodyera alveolata Pradhan. The morphological differences between G. medogensis and G. alveolata are not enough to treat G. medogensis as a distinct species, but as a variety. Molecular phylogenetic results based on one nuclear (ITS) and two plastid markers (matK and trnL-F) also showed close affinity between these two taxa.

References

<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;"><span lang="en-GB">Bhattacharjee, A., Tsering, J. &amp; Rinya, K. (2022) On the first authentic report of </span></span><span style="color: #010003;"><em>Goodyera alveolata</em></span><span style="color: #010003;"> (Orchidaceae) from India. </span><span style="color: #010003;"><em>Nelumbo </em></span><span style="color: #010003;">64 (2): 187–191.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Hall, T.A. (1999) BioEdit: A User-Friendly Biological Sequence Alignment Editor and Analysis Program for Windows 95/98/NT. </span><span style="color: #010003;"><em>Nucleic Acids Symposium Series</em></span><span style="color: #010003;"> 41: 95–98.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Hu, C., Tian, H., Li, H., Hu, A., Xing, F., Bhattacharjee, A., Hsu, T., Kumar, P. &amp; Chung, S. (2016) Phylogenetic analysis of a ‘Jewel Orchid’ genus </span><span style="color: #010003;"><em>Goodyera</em></span><span style="color: #010003;"> (Orchidaceae) based on DNA sequence data from Nuclear and Plastid regions. </span><span style="color: #010003;"><em>PLoS ONE </em></span><span style="color: #010003;">11 (2): e0150366. https://doi.org/10.1371/journal.pone.0150366</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">King, G. &amp; Pantling, R. (1896) New Orchids from Sikkim. </span><span style="color: #010003;"><em>Journal of the Asiatic Society of Bengal, Part 2,&nbsp;Natural History</em></span><span style="color: #010003;"> 64: 329–344. </span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Lanfear, R., Frandsen, P.B., Wright, A.M., Senfeld, T. &amp; Calcott, B. (2017) PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. </span><span style="color: #010003;"><em>Molecular Biology and Evolution</em></span><span style="color: #010003;"> 34 (3): 772–773. https://doi.org/10.1093/molbev/msw260</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Nguyen, L.T., Schmidt, H.A., Von Haeseler, A. &amp; Minh, B.Q. (2015) IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. </span><span style="color: #010003;"><em>Molecular Biology and Evolution </em></span><span style="color: #010003;">32 (1): 268–274. https://doi.org/10.1093/molbev/msu300</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Pradhan, U.C. (1975) A New Species of </span><span style="color: #010003;"><em>Goodyera</em></span><span style="color: #010003;">. </span><span style="color: #010003;"><em>Orchid Digest</em></span><span style="color: #010003;"> 39 (4): 133. 1975.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Pradhan, U.C. (1979) </span><span style="color: #010003;"><em>Indian Orchids: Guide to Identification &amp; Culture, vol. 2.</em></span><span style="color: #010003;"> Self-Published, Kalimpong.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Rambaut, A. (2016) FigTree 1.4.3. Computer program distributed by the author. [http://tree.bio. ed.ac.uk/software/figtree]</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Ronquist, F., Teslenko, M., Van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. &amp; Huelsenbeck, J.P. (2012) MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. </span><span style="color: #010003;"><em>Systematic Biology</em></span><span style="color: #010003;"> 61 (3): 539–542. https://doi.org/10.1093/sysbio/sys029</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Talavera, G. &amp; Castresana, J. (2007) Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. </span><span style="color: #010003;"><em>Systematic Biology</em></span><span style="color: #010003;"> 56 (4): 564–577. https://doi.org/10.1080/10635150701472164</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Thompson, J.D., Higgins, D.G. &amp; Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. </span><span style="color: #010003;"><em>Nucleic Acids Research</em></span><span style="color: #010003;"> 22 (22): 4673–4680. https://doi.org/10.1093/nar/22.22.4673</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Tong, Y.H., Sun, M., Wang, B.M. &amp; Tian, H.Z. (2022) </span><span style="color: #010003;"><em>Goodyera medogensis</em></span><span style="color: #010003;"> (Orchidaceae), a new species from Tibet, China. </span><span style="color: #010003;"><em>PhytoKeys </em></span><span style="color: #010003;">189: 141–154. https://doi.org/10.3897/phytokeys.189.77374</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Toth, E.G., Tremblay, F., Housset, J.M., Bergeron, Y. &amp; Carcaillet, C. (2019) Geographic isolation and climatic variability contribute to genetic differentiation in fragmented populations of the long-lived subalpine conifer Pinus cembra L. in the western Alps. </span><span style="color: #010003;"><em>BMC Evolutionary Biology</em></span><span style="color: #010003;"> 19: 1–17. https://doi.org/10.1186/s12862-019-1510-4</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Jiang, X.L., An, M., Zheng, S.S., Deng, M. &amp; Su, Z.H. (2018) Geographical isolation and environmental heterogeneity contribute to the spatial genetic patterns of </span><span style="color: #010003;"><em>Quercus kerrii</em></span><span style="color: #010003;"> (Fagaceae). </span><span style="color: #010003;"><em>Heredity</em></span><span style="color: #010003;"> 120 (3): 219–233. https://doi.org/10.1038/s41437-017-0012-7</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Ye, M., Liu, W., Xue, Q., Hou, B., Luo, J. &amp; Ding, X. (2017) Phylogeography of the endangered orchid </span><span style="color: #010003;"><em>Dendrobium moniliforme</em></span><span style="color: #010003;"> in East Asia inferred from chloroplast DNA sequences. </span><span style="color: #010003;"><em>Mitochondrial DNA Part A</em></span><span style="color: #010003;"> 28 (6): 880–891. https://doi.org/10.1080/24701394.2016.1202942</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Pinheiro, F., Cozzolino, S., de Barros, F., Gouveia, T.M., Suzuki, R.M., Fay, M.F. &amp; Palma‐Silva, C. (2013) Phylogeographic structure and outbreeding depression reveal early stages of reproductive isolation in the Neotropical orchid </span><span style="color: #010003;"><em>Epidendrum denticulatum</em></span><span style="color: #010003;">. </span><span style="color: #010003;"><em>Evolution</em></span><span style="color: #010003;"> 67 (7): 2024–2039. https://doi.org/10.1111/evo.12085</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Nair, R.R., Karumathil, S., Udayan, P.S., Prakashkumar, R.P. &amp; Sérsic, A.N. (2019) Evolutionary history of </span><span style="color: #010003;"><em>Kingiodendron pinnatum</em></span><span style="color: #010003;"> (Fabaceae: Caesalpinoideae), an endangered species of the Western Ghats, India: a phylogeographical approach. </span><span style="color: #010003;"><em>Biological Journal of the Linnean Society</em></span><span style="color: #010003;"> 126 (4): 688–705. https://doi.org/10.1093/biolinnean/blz004</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Shaw, J., Shafer, H.L., Leonard, O.R., Kovach, M.J., Schorr, M. &amp; Morris, A.B. (2014) Chloroplast DNA sequence utility for the lowest phylogenetic and phylogeographic inferences in angiosperms: the tortoise and the hare IV. </span><span style="color: #010003;"><em>American Journal of Botany</em></span><span style="color: #010003;"> 101 (11): 1987–2004. https://doi.org/10.3732/ajb.1400398</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #010003;">Suetsugu, K., Hirota, S.K., Nakato, N., Suyama, Y. &amp; Serizawa, S. (2022) Morphological, ecological, and molecular phylogenetic approaches reveal species boundaries and evolutionary history of </span><span style="color: #010003;"><em>Goodyera crassifolia</em></span><span style="color: #010003;"> (Orchidaceae, Orchidoideae) and its closely related taxa. </span><span style="color: #010003;"><em>PhytoKeys</em></span><span style="color: #010003;"> 212: 111–134. https://doi.org/10.3897/phytokeys.212.91536</span></span></span></span></p>