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Type: Article
Published: 2023-02-27
Page range: 135–144
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Hymenagaricus siamensis (Agaricaceae, Agaricales), a novel macrofungus from northern Thailand

Research Center of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand, Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
Research Center of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand, Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
Research Center of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand, Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
Research Center of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand, Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
Research Center of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand, Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand, Academy of Science, the Royal Society of Thailand, Bangkok, 10300, Thailand
Fungi Gilled fungus phylogeny saprotrophic fungus taxonomy tropic

Abstract

A new macro-fungal species, described herein as Hymenagaricus siamensis, was collected from northern Thailand during the period from 2020 to 2022. This species is characterized by its small-sized basidiomata, a squamulose pileipellis consisting of pseudoparenchymatous tissue, yellowish-brown basidiospores and an absence of pleurocystidia and clamp connections. However, it is clearly distinguishable from H. nigroviolaceus by the presence of larger basidiospores and smaller pseudoparenchymatous cells in the squamulose pileus. Phylogenetic analysis of internal transcribed spacers (ITS) and large subunit (nrLSU) of the nuclear ribosomal DNA (rDNA) also revealed that the position of H. siamensis is well-supported within the genus Hymenagaricus, but distinct from other sequenced species. A full description, color photographs, illustrations and a phylogenetic tree showing the position of H. siamensis are provided. Comparisons between morphologically similar and related species have also been made and are discussed.

References

<p>Alfaro, M.E., Zoller, S. &amp; Lutzoni, F. (2003) Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov Chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. <em>Molecular Biology and Evolution </em>20: 255–266. https://doi.org/10.1093/molbev/msg028</p>
<p>Al-Kharousi, M., Hussain, S., Al-Muharabi, M.A., Al-Shabibi, Z., Al-Maqbali, D., Al-Balushi, A.H., Al-Yahyaei, M.N., Al-Saady, N., Velazhahan, R. &amp; Al-Sadi, A.M. (2022) The genus <em>Xanthagaricus</em>: an updated global species distribution and phylogeny with the description of two new species from Oman. <em>Journal of Fungi</em> 8: 173.&nbsp; https://doi.org/10.3390/jof8020173</p>
<p>Chandrasrikul, A. Suwanarit, P., Sangwanit, U., Lumyong, S., Payapanon, A., Sanoamuang, N., Pukahuta, C., Petcharat, V., Sardsud, U., Duengkae, K., Klinhom, U., Thongkantha, S. &amp; Thongklam, S. (2011) Mushroom (basidiomycetes) in Thailand. Office of Natural Resources and Environmental Policy and Planning, Bangkok.</p>
<p>Darriba, D., Taboada, G.L., Doallo, R. &amp; Posada, D. (2012) jModelTest 2: more models, new heuristics and parallel computing. <em>Nature Methods</em> 9: 772. https://doi.org/10.1038/nmeth.2109</p>
<p>Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. <em>Nucleic Acids Research </em>32: 1792–1797. https://doi.org/10.1093/nar/gkh340</p>
<p>Felsenstein, J. (1985) Confidence intervals on phylogenetics: an approach using bootstrap. <em>Evolution </em>39: 783–791. https://doi.org/10.1111/j.1558-5646.1985.tb00420.x</p>
<p>Ge, Z.W., Chen, C.M. &amp; Yang, Z.L. (2008) A new species of <em>Hymenagaricus</em> from Taiwan and its phylogenetic position inferred from ITS and nLSU sequences. <em>Cryptogamie Mycologie</em> 29: 259–265.</p>
<p>Ge, Z.W. &amp; Yang, Z.L. (2017) <em>Pseudolepiota zangmui</em> gen. et sp. nov. (Agaricaceae, Basidiomycota), a new white-spored mushroom from China. <em>Phytotaxa</em> 312 (2): 247–255.&nbsp; https://doi.org/10.11646/phytotaxa.312.2.7</p>
<p>He, M.Q., Zhao, R.L., Hyde, K.D., Begerow, D., Kemler, M., Yurkov, A., McKenzie, E.H.C., Raspé, O., Kakishima, M., Sánchez-Ramírez, S., Vellinga, E.C., Halling, R., Papp, V., Zmitrovich, I.V., Buyck, B., Ertz, D., Wijayawardene, N.N., Cui, B.K., Schoutteten, N., Liu, X.Z., Li, T.H., Yao, Y.J., Zhu, X.Y., Liu, A.Q., Li, G.J., Zhang, M.Z., Ling, Z.L., Cao, B., Antonín, V., Boekhout, T., Da Silva, B.D.B., De Crop, E., Decock, C., Dima, B., Dutta, A.K., Fell, J.W., Geml, J., Ghobad-Nejhad, M., Giachini, A.J., Gibertoni, T.B., Gorjón, S.P., Haelewaters, D., He, S.H., Hodkinson, B.P., Horak, E., Hoshino, T., Justo, A., Lim, Y.W., Menolli Jr, N., Mešić, A., Moncalvo, J.M., Mueller, G.M., Nagy, L.G., Nilsson, R.H., Noordeloos, M., Nuytinck, J., Orihara, T., Ratchadawan, C., Rajchenberg, M., Silva- Filho, A.G.S., Sulzbacher, M.A., Tkalčec, Z., Valenzuela, R., Verbeken, A., Vizzini, A., Wartchow, F., Wei, T.Z., Weiß, M., Zhao, C.L. &amp; Kirk, P.M. (2019) Notes, outline and divergence times of Basidiomycota. <em>Fungal Diversity</em> 99: 105–367. https://doi.org/10.1007/s13225-019-00435-4</p>
<p>Hall, T. (2004) BioEdit. Ibis Therapeutics, Carlsbad, CA, 92008, USA. Available from: http://www.mbio.ncsu.edu/BioEdit/bioedit.html (accessed 31 December 2021)</p>
<p>Heinemann, P. (1956) Champignons récoltés au Congo Belge par Madame M. Goossens-Fontana II. <em>Agaricus</em> Fries s.s. <em>Bulletin du Jardin Botanique de l’État à Bruxelles</em> 26: 1–127.</p>
<p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; https://dx.doi.org/10.2307/3667096</p>
<p>Heinemann, P. (1981) <em>Hymenagaricus</em> Heinem. gen. nov. (Agaricaceae). <em>Bulletin du Jardin Botanique National de Belgique</em> 51: 465–466. https://dx.doi.org/10.2307/3668081</p>
<p>Heinemann, P. (1984) <em>Hymenagaricus kivuensis</em> Heinem. sp. nov. <em>Bulletin du Jardin Botanique National de Belgique</em> 54: 290–291.&nbsp; https://dx.doi.org/10.2307/3667880</p>
<p>Heinemann, P. (1985) <em>Hymenagarici novi</em>. <em>Bulletin du Jardin Botanique National de Belgique</em> 55: 492–494.&nbsp; https://dx.doi.org/10.2307/3667969</p>
<p>Heinemann, P. &amp; Little Flower, S.R. (1984) <em>Hymenagaricus</em> (Agaricaceae) de Kerala (Inde) et de Sri Lanka. <em>Bulletin du Jardin Botanique National de Belgique</em> 54: 151–182. https://doi.org/10.2307/3667871</p>
<p>Hillis, D.M. &amp; Bull, J.J. (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. <em>Systematic Biology </em>42: 182–192.&nbsp; https://doi.org/10.1093/sysbio/42.2.182</p>
<p>Hosen, M.I., Song, Z., Gates, G. &amp; Li, T. (2017a) <em>Xathagaricus careuleus</em>, a new species with ink-blue lamellae from southeast China. <em>Mycoscience</em> 59: 188–192. https://doi.org/10.1016/j.myc.2017.10.003</p>
<p>Hosen, M.I., Song, Z., Gates, G., Karunarathna, S.C., Salahuddin, M., Chowdhuey, M. &amp; Li, T. (2017b) Two new species of <em>Xanthagaricus</em> and some notes on <em>Heinemannomyces</em> from Asia. <em>Mycokeys</em> 28: 1–18. https://dx.doi.org/ 10.3897/mycokeys.28.21029</p>
<p>Hosen, M.I. &amp; Yang, Z.L. (2013) <em>Coniolepiota spongodes</em> (Agaricaceae, Basidiomycota) in Bangladesh and China. <em>Mycotaxon </em>124: 341–347. https://dx<em>.</em>doi.org/10.5248/124.341</p>
<p>Hussain, S., Afshan, N., Ahmad, H., Sher, H. &amp; Khalid, A.N. (2017) <em>Xanthagaricus pakistanicus</em> sp. nov. (Agaricaceae): first report of the genus from Pakistan. <em>Turkish Journal of Botany</em> 41: 1–11. https://doi.org/10.3906/bot-1705-21</p>
<p>Hyde, K.D., Hongsanan, S., Jeewon, R., Bhat, D.J., McKenzie, E.H.C., Jones, E.B.G., Phookamsak, R., Ariyawansa, H.A., Boonmee, S., Zhao, Q., Abdel-Aziz, F.A., Abdel-Wahab, M., Banmai, S., Chomnunti, P., Cui, B.K., Daranagama, D.A., Das, K., Dayarathne, M.C., De Silva, N.I., Dissanayake, A.J., Doilom, M., Ekanayaka, A.H., Gibertoni, T.B., Góes-Neto, A., Huang, S.K., Jayasiri, S.C., Jayawardena, R.S., Konta, S., Lee, H.B., Li, W.J., Lin, C.G., Liu, J.K., Lu, Y.Z., Luo, Z.L., Manawasinghe, I.S., Manimohan, P., Mapook, A., Niskanen, T., Norphanphoun, C., Papizadeh, M., Perera, R.H., Phukhamsakda, C., Richter, C., De Santiago, A.L.C.M., Drechsler-Santos, E.R., Senanayake, I.C. &amp; Tanaka, K. (2016) Fungal diversity notes 367–490: taxonomic and phylogenetic contributions to fungal taxa. <em>Fungal Diversity </em>80: 1–270. https://doi.org/10.1007/s13225-016-0373-x</p>
<p>Jeewon, R. &amp; Hyde, K.D. (2016) Establishing species boundaries and new taxa among fungi: Recommendations to resolve taxonomic ambiguities. <em>Mycosphere</em> 7: 1669–1677.&nbsp; https://doi.org/10.5943/mycosphere/7/11/4</p>
<p>Kirk, P.M., Cannon, P.F., Minter, D. &amp; Stalpers, J.A. (Eds.) (2008) <em>Dictionary of the fungi</em>, 10th ed. CAB International, Wallingford.</p>
<p>Kornerup, A. &amp; Wanscher, J.H. (1978) <em>Methuen handbook of colour</em>, 3rd ed. Eyre Methuen, London, 252 pp.</p>
<p>Kumla, J., Suwannarach, N., Sri-Ngernyuang, K. &amp; Lumyong, S. (2018) <em>Xanthagaricus thailandensis</em> sp. nov. (Agaricales, Basidiomycota), from northern Thailand. <em>Phytotaxa</em> 348 (2): 109–117. https://doi.org/10.11646/phytotaxa.348.2.5</p>
<p>Kumla, J., Suwannarach, N. &amp; Wannathes, N. (2021) <em>Hymenagaricus saisamornae</em> sp. nov. (Agaricales, Basidiomycota) from Northern Thailand. <em>Chiang Mai Journal of Science</em> 48: 827–836.</p>
<p>Little Flower S.R., Hosagoudar, V.B. &amp; Abraham, T.K. (1997) <em>Xanthagaricus</em>, a new generic name in the family Agaricaceae. <em>New Botanist</em> 24: 93–100.</p>
<p>Liu, Y.S., Liu, J.K., Sysouphanthong, P., Hyde, K.D. &amp; Lumyong, S. (2020) <em>Xanthagaricus siamensis</em> sp. nov. (Agaricaceae), a new species with dull green lamellae from northern Thailand. <em>Phytotaxa</em> 437 (1): 14–22. https://doi.org/10.11646/phytotaxa.437.1.2</p>
<p>Liu, Y.S., Kumla, J., Suwannarach, N., Sysouphanthong, P. &amp; Lumyong, S. (2022) Three species of <em>Amanita</em> section <em>Lepidella</em> (<em>Amanitaceae</em>, <em>Agaricales</em>) from northern Thailand. <em>Phytotaxa</em> 570 (1): 16–28. https://doi.org/10.11646/phytotaxa.570.1.2</p>
<p>Mwanga, Z.N. &amp; Tibuhwa, D.D. (2014) Morphology and molecular taxonomy of <em>Hymenagaricus mlimaniensis</em> species nov: a new Basidiomycota mushroom from Mlimani main campus, Tanzania. <em>Journal of Yeast and Fungal Research</em> 5: 96–102. https://doi.org/10.5897/JYFR2014.0144</p>
<p>Pegler, D.N. (1977) A preliminary agaric flora of East Africa. <em>Kew Bulletin Additional Series</em> 6: 1–615.</p>
<p>Pegler, D.N. (1986) <em>Agaric flora of Sri Lanka. Kew Bulletin Additional Series XII</em>. Her Majesty’s Stationery Office, London.</p>
<p>Reid, D.A. &amp; Eicker, A. (1995) The genus <em>Hymenagaricus</em> Heinem. in South Africa. <em>South African Journal of Botany</em> 61: 293–297.&nbsp; https://doi.org/10.1016/S0254-6299(15)30549-4</p>
<p>Reid, D.A. &amp; Eicker, A. (1998) South African Fungi 8. Three new species of <em>Hymenagaricus</em> from South Africa, with a revised key to South African taxa. <em>South African Journal of Botany</em> 64: 256–360.&nbsp; https://doi.org/10.1016/S0254-6299(15)30924-8 https://dx.doi.org/10.1016/S0254-6299(15)30924-8</p>
<p>Reid, D.A. &amp; Eicker, A (1999) South African fungi 10: new species, new records and some new observations. <em>Mycotaxon</em> 73: 169–197.</p>
<p>Ronquist, F., Teslenko, M., Van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. &amp; Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. <em>Systematic Biology</em> 61: 539–542. https://doi.org/10.1093/sysbio/sys029</p>
<p>Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. <em>Bioinformatics</em> 22: 2688–2690. https://doi.org/10.1093/bioinformatics/btl446</p>
<p>Suwannarach, N., Kumla, J., Khuna, S., Wannathes, N., Thongklang, N., Sysouphanthong, P., Luangharn, T., Wongkanoun, S., Karunarathna, S.C., Liu, Y.S., Boonpratuang, T., Wiriyathanawudhiwong, N., Choeyklin, R., Hyde, K.D. &amp; Lumyong, S. (2022) History of Thai mycology and resolution of taxonomy for Thai macrofungi confused with Europe and American names. <em>Chiang Mai Journal of Science</em> 49: 654–683. https://doi.org/10.12982/CMJS.2022.052</p>
<p>Sysouphanthong, P., Thongklang, N., Liu, J.K. &amp; Vellinga, E.C. (2021) Description of lepiotaceous fungal species of the genera <em>Chlorophyllum</em>, <em>Clarkeinda</em>, <em>Macrolepiota</em>, <em>Pseudolepiota</em>, and <em>Xanthagaricus</em>, from Laos and Thailand. <em>Diversity</em> 13: 666. https://doi.org/10.3390/d13120666</p>
<p>Tamura, K., Stecher, G., Petersen, D., Filipsky, A. &amp; Kumar, S. (2013). MEGE 6: molecular evolutionary genetics analysis version 6.0. <em>Molecular Biology and Evolutionary</em> 30: 2725–2729. https://doi.org/10.1093/molbev/mst197</p>
<p>Tibuhwa, D.D. &amp; Mwanga, Z.N. (2014) A comprehensive study on Agaricus-like mushrooms from Mwalimu JK Nyerere Mlimani Campus, Tanzania. <em>Journal of Biology, Agriculture and Healthcare</em> 4: 70–78.</p>
<p>Vellinga, E.C., Noordeloos, M.E. (2001) Glossary. <em>In</em>: Noordeloos, M.E., Kuyper, T.W. &amp; Vellinga, E.C. (Eds.) .<em>Flora Agaricina Neerlandica</em>, Vol. 5. A.A. Balkema Tokyo, Japan, pp. 6–11.</p>
<p>Vellinga, E.C., Sysouphanthong, P. &amp; Hyde, K.D. (2011) The family Agaricaceae: phylogenies and two new white-spored genera. <em>Mycologia</em> 103: 494–509. https://doi.org/10.3852/10-204</p>
<p>Vilgalys, R. &amp; Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several <em>Cryptococcus </em>species. <em>Journal of Bacteriology </em>172: 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990</p>
<p>Wannathes, N., Suwannarach, N., Khuna, S. &amp; Kumla, J. (2022) Two novel species and two new records within the genus <em>Pluteus</em> (Agaricomycetes, Agaricales) from Thailand. <em>Diversity</em> 14: 156. https://doi.org/10.3390/d14030156</p>
<p>White, T.J., Burns, T., Lee, S. &amp; Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. <em>In</em>: Innis, M.A., Gelfand, D.H., Sninsky, J.J. &amp; Whitish, T.J. (Eds.) <em>PCR Protocols, a Guide to Methods and Applications</em>. Academic Press, San Diego. https://doi.org/10.1016/B978-0-12-372180-8.50042-1</p>
<p>Zhao, R., Karunarathna, S., Raspé, O., Parra, L.A., Guinberteau, J., Moinard, M., De Kesel, A., Barroso, G., Courtecuisse, R., Hyde, K.D., Guelly, A.K., Desjardin, D.E. &amp; Callac, P. (2011) Major clades in tropical <em>Agaricus</em>. <em>Fungal Diversity</em> 51: 279–296. https://doi.org/10.1007/s13225-011-0136-7</p>
<p>Zhao, R., Desjardin, D.E., Soytong, K., Perry, B.A. &amp; Hyde, K.D. (2010) A monograph of <em>Micropsalliota</em> in northern Thailand based on morphological and molecular data. <em>Fungal Diversity </em>45: 33–79. https://doi.org/10.1007/s13225-010-0050-4</p>