Phylogeny, distribution and time divergence of Fuscoporia (Hymenochaetaceae, Basidiomycota) with the description of a new species from Dhofar region, southern part of Oman

SHAH HUSSAIN; MOZA AL-KHAROUSI; MARWA A. AL-MUHARABI; DUA’A AL-MAQBALI; ZAHRA AL-SHABIBI; ABDULLAH H. AL-BALUSHI; MOHAMED N. AL-YAHYA’EI; NADIYA AL SAADY; RETHINASAMY VELAZHAHAN; ABDULLAH M. AL-SADI

doi:10.11646/phytotaxa.570.2.3

Issue: Vol. 570 No. 2: 27 October 2022

Type: Article

Published: 2022-10-27

DOI: 10.11646/phytotaxa.570.2.3

Page range: 150-164

Abstract views: 103

PDF downloaded: 5

**Phylogeny, distribution and time divergence of Fuscoporia (Hymenochaetaceae, Basidiomycota) with the description of a new species from Dhofar region, southern part of Oman**

SHAH HUSSAIN⁺⁻
MOZA AL-KHAROUSI⁺⁻
MARWA A. AL-MUHARABI⁺⁻
DUA’A AL-MAQBALI⁺⁻
ZAHRA AL-SHABIBI⁺⁻
ABDULLAH H. AL-BALUSHI⁺⁻
MOHAMED N. AL-YAHYA’EI⁺⁻
NADIYA AL SAADY⁺⁻
RETHINASAMY VELAZHAHAN⁺⁻
ABDULLAH M. AL-SADI⁺⁻

Oman Animal and Plant Genetic Resources Center (Mawarid), Ministry of Higher Education, Research and Innovation, P.O. Box 515, P.C. 123, Muscat, Sultanate of Oman; Department of Plant Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, PO Box 34, AlKhoud 123, Sultanate of Oman

Oman Animal and Plant Genetic Resources Center (Mawarid), Ministry of Higher Education, Research and Innovation, P.O. Box 515, P.C. 123, Muscat, Sultanate of Oman

Oman Animal and Plant Genetic Resources Center (Mawarid), Ministry of Higher Education, Research and Innovation, P.O. Box 515, P.C. 123, Muscat, Sultanate of Oman; Sultan Qaboos Comprehensive Cancer Care & Research Center, P.O. Box 566, P.C. 123, Muscat, Sultanate of Oman

Oman Animal and Plant Genetic Resources Center (Mawarid), Ministry of Higher Education, Research and Innovation, P.O. Box 515, P.C. 123, Muscat, Sultanate of Oman

Department of Plant Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, PO Box 34, AlKhoud 123, Sultanate of Oman

Dhofar new species phylogeny taxonomy Fungi

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Abstract

Fuscoporia is a large genus with approximately 80 known species, distributed in various climates from subtropical to temperate, across the all continents except Antarctica. Divergence times of Fuscoporia was estimated for the first time, using BEAST v. 1.8.4, with three internal calibration points. Using three DNA regions: internal transcribed spacers (ITS1-5.8S-ITS2 = ITS), D1/D2 domain of large subunit of nuclear ribosomal DNA (28S) and translation elongation factor 1 alpha gene (TEF1α), the ancestral age of the genus was estimated around 77 Myr (million years). Molecular clock analyses also indicate the presence of six major clades, and the stem ages of each were estimated below 50 Myr. These six clades could be used for infrageneric classification of Fuscoporia. Further, we also discussed the distribution of Fuscoporia species in various climates. We hypothesized that the ancestral species of the genus evolved during late Cretaceous period with resupinate fruiting body in subtropics of Southern Asia. Furthermore, we also described a new species in the genus, Fuscoporia dhofarensis from Dhofar region, located in the southern part of Oman. Species description is based on morphological characteristics of fruiting body and phylogenetic analyses of ITS, 28S and TEF1α regions. The new species is characterized by a pileate fruiting body, with dimitic hyphal system, broadly ellipsoid basidiospores.

References

Al-Kharousi, M., Hussain, S., Al-Muharabi, M.A., Al-Shabibi, Z., Al-Maqbali, D.A., Al-Balushi, A.H., Al-Yahya’ei, M.N., Al-Saady, N., Velazhahan, R. & Al-Sadi, A.M. (2022a) The genus Xanthagaricus: an updated global species distribution and phylogeny with the description of two new species from Oman. Journal of Fungi 8 (2): 173. https://doi.org/10.3390/jof8020173
Al-Kharousi, M., Hussain, S., Al-Muharabi, M.A., Al-Shabibi, Z., Al-Maqbali, D.A., Al-Balushi, A.H., Al-Yahya’ei, M.N., Al-Saady, N., Velazhahan, R. & Al-Sadi, A.M. (2022b) Notes on the genus Micropsalliota (Agaricales, Basidiomycota) and the description of a new species from Southern Oman. Phytotaxa 543 (2): 113–126. https://doi.org/10.11646/phytotaxa.543.2.2
Bakshi, B.K., Sen, M. & Singh, B. (1970) Cultural diagnosis of Indian Polyporaceae. 2. Genera Fomes and Trametes. Indian Forest Records 2: 245–276.Belda, M., Holtanová, E., Halenka, T. & Kalvová, J. (2014) Climate classification revisited: From Köppen to Trewartha. Climate Research 59: 1–13. https://doi.org/10.3354/cr012 04
Bookhagen, B., Thiede, R.C. & Strecker, M.R. (2005) Abnormal monsoon years and their control on erosion and sediment flux in the high, arid northwest Himalaya. Earth Planetary Science Letters 231: 131–146. https://doi.org/10.1016/j.epsl.2004.11.014
Carranza, S., Xipell, M., Tarroso, P., Gardner, A., Arnold, E.N., Robinson, M.D., Simó-Riudalbas, M., Vasconcelos, R., de Pous, P., Amat, F. & Šmíd, J. (2018) Diversity, distribution and conservation of the terrestrial reptiles of Oman (Sauropsida, Squamata). PloS one 13 (2): e0190389. https://doi.org/10.1371/journal.pone.0190389
Chen, Q. & Dai, Y.C. (2019) Two new species of Fuscoporia (Hymenochaetales, Basidiomycota) from southern China based on morphological characters and molecular evidence. Mycokeys 61: 75–89. https://doi.org/10.3897/mycokeys.61.46799
Chen, Q., Du, P., Vlasaìk, J., Wu, F. & Dai, Y.C. (2020) Global diversity and phylogeny of Fuscoporia (Hymenochaetales, Basidiomycota). Mycosphere 11: 1477–1513. https://doi.org/10.5943/mycosphere/11/1/10
Chen, Q., Liu, L., Zhang, D.S. & Dong, L.L. (2022) Fuscoporia hainanensis sp. nov. (Hymenochaetales, Basidiomycota), a new member of the F. contigua group. Phytotaxa 558: 251–262. https://doi.org/10.11646/phytotaxa.558.3.1
Chen, Q., Wu, F., Ji, X.H., Si, J., Zhou, L.W., Tian, X.M., Vlasák, J. & Dai, Y.C. (2019) Phylogeny of the genus Fuscoporia and taxonomic assessment of the F. contigua group. Mycologia 111: 423–444. https://doi.org/10.1080/00275514.2019.1570749
Cubeta, M.A., Echandi, E., Abernethy, T. & Vilgalys, R. (1991) Characterization of anastomosis groups of binucleate Rhizoctonia species using restriction analysis of an amplified ribosomal RNA gene. Phytopathology 81: 1395–1400.
Dai, Y.C. (2000) A checklist of polypores from Northeast China. Karstenia 40: 23–29. https://doi.org/10.29203/ka.2000.347
Dai, Y.C. (2010) Hymenochaetaceae (Basidiomycota) in China. Fungal Diversity 45: 131–343.
Dai, Y.C., Cui, B.K., Yuan, H.S. & Li, B.D. (2007) Pathogenic wood-decaying fungi in China. Forest Pathology 37: 105–120. https://doi.org/10.1111/j.1439-0329.2007.00485.x
Donk, M.A. (1960) The generic names proposed for Polyporaceae. Persoonia 1: 173–302.
Drummond, A.J. & Rambaut, A. (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214. https://doi.org/10.1186/1471−2148−7−214
Drummond, A.J., Suchard, M.A., Xie, D. & Rambaut, A. (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29: 1969–1973. https://doi.org/10.1093/molbe v/mss075
Du, P., Chen, Q. & Vlasak, J. (2020) Fuscoporia ambigua sp. nov., a new species from America and China. Phytotaxa 456. 175–185. https://doi.org/10.11646/phytotaxa.456.2.5
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792–1797.
Fiasson, J.L. & Niemelä, T. (1984) The Hymenochaetales: a revision of the European poroid taxa. Karstenia 24: 14–28. https://doi.org/10.29203/ka.1984.224
Gardes, M., Bruns, T.D. (1993) ITS primers with enhanced specificity for basidiomycetes, application to the identification of mycorrhizae and rusts. Molecular Ecology 2: 113–118. https://doi.org/10.1111/j.1365-294X.1993.tb00005.x
Gernhard, T. (2008) The conditioned reconstructed process. Journal of Theoretical Biology 253: 769–778.
Groposo, C., Loguercio-Leite, C. & Góes-Neto, A. (2007) Fuscoporia Murrill (Basidiomycota, Hymenochaetales) in Southern Brazil. Mycotaxon 101: 55–63.
Hall, T.A. (1999) BioEdit 5.0.9: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98. https://doi.org/10.1007/s13225-010-0066-9
Hibbett, D.S. (2004) Trends in morphological evolution in homobasidiomycetes inferred using maximum likelihood: a comparison of binary and multistate approaches. Systematic Biology 53 (6): 889–903. https://doi.org/10.1080/10635150490522610
Hibbett, D.S. (2007) After the gold rush, or before the flood? Evolutionary morphology of mushroom-forming fungi (Agaricomycetes) in the early 21st century. Mycological research 111 (9): 1001–1018. https://doi.org/10.1016/j.mycres.2007.01.012
Hibbett, D.S. & Binder, M. (2002) Evolution of complex fruiting–body morphologies in homobasidiomycetes. Proceedings of the Royal Society of London. Series B: Biological Sciences 269 (1504): 1963–1969. https://doi.org/10.1098/rspb.2002.2123
Hibbett, D.S., Grimaldi, D. & Donoghue, M.J. (1997) Fossil mushrooms from Miocene and Cretaceous ambers and the evolution of Homobasidiomycetes. American Journal of Botany 84 (7): 981–991. https://doi.org/10.2307/2446289
Hussain, S., Al-Kharousi, M., Al-Muharabi, M.A., Al-Maqbali, D., Al-Shabibi, Z., Al-Balushi, A.H., Al-Yahya’ei, M.N., Al Saady, N., Abdel-Jalil, R., Velazhahan, R. & Al-Sadi, A.M. (2022) Phylogeny of Agaricus subgenus Pseudochitonia with the description of a new section and a new species from Oman. Mycological Progress 21 (8): 1–13. https://doi.org/10.1007/s11557-022-01819-8
Kalyaanamoorthy, K., Minh, B.Q., Wong, T.K.F., von Haeseler, A. & Jermiin, L.S. (2017) ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature Methods 14: 587–589. https://doi.org/10.1038/nmeth.4285
Larsen, M.J. & Cobb-Poulle, L.A. (1990) Phellinus (Hymenochaetaceae): a survey of the world taxa. Synopsis Fungorum 3: 1–206.
Madeira, F., Park, Y.M., Lee, J., Buso, N., Gur, T., Madhusoodanan, N., Basutkar, P., Tivey, A.R., Potter, S.C., Finn, R.D. & Lopez, R. (2019) The EMBLEBI search and sequence analysis tools APIs in 2019. Nucleic Acids Research 47 (W1): W636–W641. https://doi.org/10.1093/nar/gkz268
Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the cipres science gateway for inference of large phylogenetic trees. In: Proceedings of the 2010 Gateway Computing Environments Workshop (GCE), New Orleans, LA, USA, 14 November 2010. IEEE: Manhattan, NY, USA. pp. 1–8.
Murrill, W.A. (1907) Polyporaceae, Part 1. North American Flora 9: 1–72.
Peel, M.C., Finlayson, B.L. & McMahon, T.A. (2007) Updated world map of the Köppen-Geiger climate classification. Hydrology and Earth System Sciences 11: 1633–1644. https://doi.org/10.5194/hess-11-1633-2007
Rambaut, A. (2012) FigTree Tree Figure Drawing Tool Version 131, Institute of Evolutionary 623 Biology, University of Edinburgh. Available online: http://treebioedacuk/software/figtree/ (accessed 3 January 2022).
Rambaut, A., Suchard, M.A., Xie, D. & Drummond, A.J. (2014) TRACER v 1.6. Computer program and documentation distributed by the authors. Available from: http://beast.bio.ed.ac.uk/Tracer (accessed 3 January 2022).
Rehner, S.A. & Buckley, E. (2005) A Beauveria phylogeny inferred from nuclear ITS and EF1-a sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97: 84–98. https://doi.org/10.3852/mycologia.97.1.84
Reid, D.A. (1975) Type studies of the larger Basidiomycetes described from South Africa. Contributions from the Bolus Herbarium 7: 1–255.
Ryvarden, L. & Gilbertson, R.L. (1994) European polypores 2. Synopsis Fungorum 7: 394–743.
Ryvarden, L. & Melo, I. (2017) Poroid fungi of Europe, 2nd edition. Synopsis Fungorum 37: 1–431.
Ryvarden, L. & Johansen, I. (1980) A preliminary polypore flora of East Africa. Fungiflora, Norway, pp. 1–636.
Smith, S.Y., Currah, R.S. & Stockey, R.A. (2004) Cretaceous and Eocene poroid hymenophores from Vancouver Island, British Columbia. Mycologia 96: 180–186. https://doi.org/10.1080/15572536.2005.11833010
Stadler, T. (2009) On incomplete sampling under birth-death models and connections to the sampling-based coalescent. Journal of Theoretical Biology 261: 58–66. https://doi.org/10.1016/j.jtbi.2009.07.018
Taylor, T.N., Hass, H., Kerp, H., Krings, M. & Hanlin, R.T. (2005) Perithecial ascomycetes from the 400 million year old Rhynie chert: an example of ancestral polymorphism. Mycologia 97: 269–285. https://doi.org/10.1080/15572536.2006.11832862
Varga, T., Krizsan, K., Foldi, C., Dima, B., Sanchez-Garcia, M., Sanchez-Ramirez, S., Szollosi, G.J., Szarkandi, J.G., Papp, V., Albert, L., Andreopoulos, W., Angelini, C., Antonin, V., Barry, K.W., Bougher, N.L., Buchanan, P., Buyck, B., Bense, V., Catcheside, P., Chovatia, M., Cooper, J., Damon, W., Desjardin, D., Finy, P., Geml, J., Haridas, S., Hughes, K., Justo, A., Karasinski, D., Kautmanova, I., Kiss, B., Kocsube, S., Kotiranta, H., LaButti, K.M., Lechner, B.E., Liimatainen, K., Lipzen, A., Lukacs, Z., Mihaltcheva, S., Morgado, L.N., Niskanen, T., Noordeloos, M.E., Ohm, R.A., Ortiz-Santana, B., Ovrebo, C., Racz, N., Riley, R., Savchenko, A., Shiryaev, A., Soop, K., Spirin, V., Szebenyi, C., Tomsovsky, M., Tulloss, R.E., Uehling, J., Grigoriev, I.V., Vagvolgyi, C., Papp, T., Martin, F.M., Miettinen, O., Hibbett, D.S. & Nagy, L.G. (2019) Megaphylogeny resolves global patterns of mushroom evolution. Nature ecology & evolution 3 (4): 668–678. https://doi.org/10.1038/s41559-019-0834-1
Wagner, T. & Fischer, M. (2001) Natural groups and a revised system for the European poroid Hymenochaetales (Basidiomycota) supported by nLSU rDNA sequence data. Mycological Research 105: 773–782. https://doi.org/10.1017/S0953756201004257
Wagner, T. & Fischer, M. (2002) Proceedings towards a natural classification of the worldwide taxa Phellinus s.l. and Inonotus s.l., and phylogenetic relationships of allied genera. Mycologia 94: 998–1016. https://doi.org/10.1080/15572536.2003.11833156
White, T.J., Bruns, T., Lee, S., Taylor, J.W. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR Protocols: A Guide to Methods and Applications. Academic Press: San Diego, CA, USA. pp. 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
Wu, F., Zhou, L.W., Vlasák, J. & Dai, Y.C. (2022) Global diversity and systematics of Hymenochaetaceae with poroid hymenophore. Fungal Diversity 113. 1–192. https://doi.org/10.1007/s13225-021-00496-4
Wu, F., Zhou, L.W., Yang, Z.L., Bau, T., Li, T.H. & Dai, Y.C. (2019) Resource diversity of Chinese macrofungi: edible, medicinal and poisonous species. Fungal Diversity 98: 1–76. https://doi.org/10.1007/s13225-019-00432-7
Zhao, R.L., Zhou, J.L., Chen, J., Margaritescu, S., Sánchez-Ramírez, S., Hyde, K.D., Callac, P., Parra, L.A., Li, G.J. & Moncalvo, J.M. (2016) Towards standardizing taxonomic ranks using divergence times – a case study for reconstruction of the Agaricus taxonomic system. Fungal Diversity 78 : 239–292. https://doi.org/10.1007/s13225-016-0357-x
Zhao, H., Zhou, M., Liu, X.Y., Wu, F. & Dai, Y.C. (2022) Phylogeny, Divergence Time Estimation and Biogeography of the Genus Onnia (Basidiomycota, Hymenochaetaceae). Frontiers in Microbiology 13. 907961. https://doi.org/10.3389/fmicb.2022.907961