Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2022-10-04
Page range: 162-172
Abstract views: 56
PDF downloaded: 1

A new host record of Diaporthe rosae on Rambutan (Nephelium lappaceum L.)

Center of Excellence in fungal research, Mae Fah Luang University, Chiang Rai, Thailand
Center of Excellence in fungal research, Mae Fah Luang University, Chiang Rai, Thailand
Center of Excellence in fungal research, Mae Fah Luang University, Chiang Rai, Thailand; School of Science, Mae Fah Luang University, Chiang Rai, Thailand
branches diseases endophytes Morphology plant pathogens phylogenetic saprobes Eudicots

Abstract

Rambutan (Nephelium lappaceum L.) is one of the most popular tropical fruits in Thailand. There is less number of studies associated with rambutan associated fungi in Thailand. During a survey to identify fungi associated with rambutan we identified D. rosae using multi-locus phylogeny (ITS-tub2-tef1-α-cal) and morphology. In this study, we provide the first report of Diaporthe rosae associated with branches of N. lappaceum in Thailand and in the world. This study provides a new host and a distribution record of D. rosae with an aim of promoting future studies in plant pathology. Identification of potential plant pathogens can help the rambutan growers to take precautions and control the disease at an early stage.

References

<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span style="color: #131413;"><span lang="en-GB">Augustin, M.A. &amp; Chua, B.C. (1998) Composition of rambutan seed. </span></span><span lang="en-GB"><em>Pertanika</em></span><span lang="en-GB"> 11: 211–215.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Castillo-Vera, A., López-Guillén, G. &amp; Sandoval-Esquivez, A. (2017) LA historia del CULTIVO de Rambután (</span><span lang="en-GB"><em>Nephelium lapacceum L</em></span><span lang="en-GB">.) en méxico. HISTORY OF the rambutan crop (</span><span lang="en-GB"><em>Nephelium lappacceum</em></span><span lang="en-GB">) IN Mexico. </span><span lang="en-GB"><em>Agro Productividad</em></span><span lang="en-GB"> 10 (9): 53</span>–<span lang="en-GB">57.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Dissanayake, A.J., Phillips, A.J.L., Hyde, K.D. &amp; Yan, J.Y. (2017) The current status of species in </span><span lang="en-GB"><em>Diaporthe</em></span><span lang="en-GB">. </span><span lang="en-GB"><em>Mycosphere</em></span><span lang="en-GB"> 8 (5): 1106–1156. https://doi.org/10.5943/mycosphere/8/5/5</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Farr, D.F. &amp; Rossman, A.Y. (2022) Fungal Databases, U.S. National Fungus Collection, ARS, USDA. Available from: http://nt.ars-grin.gov/fungaldatabases/ (Retrieved 8 March 2022)</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Fernando, A.F. &amp; Richard, T.H. (1996) Morphological and RAPD analyses of </span><span lang="en-GB"><em>Diaporthe phaseolorum</em></span><span lang="en-GB"> from soybean. </span><span lang="en-GB"><em>Mycologia</em></span><span lang="en-GB"> 88: 425–440. https://doi.org/10.1080/00275514.1996.12026670</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Gao, Y.H., Lui, F., Duan, W., Crous, P.W. &amp; Cai, L. (2017) </span><span lang="en-GB"><em>Diaporthe</em></span><span lang="en-GB"> is paraphyletic. </span><span lang="en-GB"><em>International Mycological Association Fungus</em></span><span lang="en-GB"> 8: 153–187. https://doi.org/10.5598/imafungus.2017.08.01.11</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Glass, N.L. &amp; Donaldson, G.C. (1995) Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. </span><span lang="en-GB"><em>Applied and Environmental Microbiology</em></span><span lang="en-GB"> 61: 1323–1330. https://doi.org/10.1128/aem.61.4.1323-1330.1995</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Gomes,R.R., Glienke, C., Videira, S.I.R., Lombard, L., Groenewald, J.Z. &amp; Crous, P.W. (2013) </span><span lang="en-GB"><em>Diaporthe</em></span><span lang="en-GB">: a genus of endophytic, saprobic and plant pathogenic fungi. </span><span lang="en-GB"><em>Persoonia </em></span><span lang="en-GB">31: 1–41. https://doi.org/10.3767/003158513X666844</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Hall, T.A. (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. </span><span lang="en-GB"><em>Nucleic Acids Symposium Series</em></span><span lang="en-GB"> 41: 95–98.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Hernández-Hernández, C., Aguilar, C.N., Rodríguez-Herrera, R., Flores-Gallegos, A.C., Morlett-Chávez, J., Govea-Salas, M. &amp; Ascacio-Valdés, J.A. (2019) Rambutan (</span><span lang="en-GB"><em>Nephelium lappaceum L</em></span><span lang="en-GB">.): Nutritional and functional properties. </span><span lang="en-GB"><em>Trends in food science &amp; technology</em></span><span lang="en-GB"> 85: Z201–210. https://doi.org/10.1016/j.tifs.2019.01.018</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Hillis, D.M. &amp; Bull, J. (1993) An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis. </span><span lang="en-GB"><em>Systematic Biology</em></span><span lang="en-GB"> 42 (2): 182–192. https://doi.org/10.1093/sysbio/42.2.182</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Jayawardena, R.S., Hyde, K.D., McKenzie, E.H.C., Jeewon, R., Phillips, A.J.L., Perera, R.H., Silva, N.I.de, Maharachchikumburua, S.S.N., Samarakoon, M.C., Ekanayake, A.H., Tennakoon, D.S., Dissanayake, A.J., Norphanphoun, C., Lin ChuangEn, Manawasinghe, I.S., Tian Qian, Brahmanage, R., Chomnunti, P., Hongsanan, S., Jayasiri, S.C., Halleen, F., Bhunjun, C.S., Karunarathna, A. &amp; Wang Yong (2019) One stop shop III: taxonomic update with molecular phylogeny for important phytopathogenic genera: 51–75 (2019). </span><span lang="en-GB"><em>Fungal Diversity</em></span><span lang="en-GB"> 98: 77–160. https://doi.org/10.1007/s13225-019-00433-6</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Jayasiri, S.C., Hyde, K.D., Ariyawansa, H.A., Bhat, J., Buyck, B., Cai, L., Dai, Y.C., Abd-Elsalam, K.A., Ertz, D., Hidayat, I., Jeewon, R., Jones, E.B.G., Bahkali, A.H., Karunarathna, S.C., Liu, J.K., Luangsa-ard, J.J., Lumbsch, H.T., Maharachchikumbura, S.S.N., McKenzie</span>,<span lang="en-GB"> E.H.C., Moncalvo Jean-Marc, Ghobad-Nejhad, M., Nilsson, H., Pang, Ka-Lai., Pereira, O.L., Phillips, A.J.L., Raspé, O., Rollins, A.W., Romero, A.I., Etayo, J., Selçuk, F., Stephenson, S.L., Suetrong, S., Taylor, J.E., Tsui, C.K.M., Vizzini, A., Abdel-Wahab, M.A., Wen, Ting-Chi, Boonmee, S., Dai, Dong-Qin., Daranagama, D.A., Dissanayake, A.J., Ekanayaka, A.H., Fryar, S.C., Hongsanan, S., Jayawardena, R.S., Li, Wen-Jing., Perera, R.H., Phookamsak, R., Silva, N.I.de., Thambugala, K.M., Tian, Q., Wijayawardene, N.N., Zhao, Rui-Lin., Zhao</span>,<span lang="en-GB"> Q., Kang Ji-Chuan. &amp; Promputtha, I. (2015) The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. </span><span lang="en-GB"><em>Fungal Diversity</em></span><span lang="en-GB"> 74: 3–18. https://doi.org/10.1007/s13225-015-0351-8</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Elfar, K., Torres, R., Díaz, G.A. &amp; Latorre, B.A. (2013) Characterization of </span><span lang="en-GB"><em>Diaporthe australafricana </em></span><span lang="en-GB">and </span><span lang="en-GB"><em>Diaporthe </em></span><span lang="en-GB">spp. Associated with Stem Canker of Blueberry in Chile. </span><span lang="en-GB"><em>The American Phytopathological Society</em></span><span lang="en-GB"> 97: 1042–1050. </span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB"> Doi 10.1094/PDIS-11-12-1030-RE</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Kishino, H. &amp; Hasegawa, M. (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea. </span><span lang="en-GB"><em>Journal of Molecular Evolution</em></span><span lang="en-GB"> 29: 170–179. https://doi.org/10.1007/BF02100115</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Maharachchikumbura, S.S.N., Guo, L.D., Cai, L., Chukeatirote, E., Wu, W.P., Sun, X., Crous, P.W., Bhat, D.J., McKenzie, E.H.C., Bahkali, A.H. &amp; Hyde, K.D. (2012) A multi-locus backbone tree for </span><span lang="en-GB"><em>Pestalotiopsis</em></span><span lang="en-GB">, with a polyphasic characterization of 14 new species. </span><span lang="en-GB"><em>Fungal Diversity</em></span><span lang="en-GB"> 56: 95–129. https://doi.org/10.1007/s13225-012-0198-1</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Morton</span>,<span lang="en-GB"> J.F. (1987) Rambutan.</span><span lang="en-GB"><em> In: </em></span><span lang="en-GB">Morton, J.F. (ed.) </span><span lang="en-GB"><em>Fruits of Warm Climates.</em></span><span lang="en-GB"> Julia F. Morton, Miami, FL pp. 262–265.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Nylander</span>,<span lang="en-GB"> J.A.A. (2004) MrModeltest v2.2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">O’donnell, K. &amp; Cigelnik, E. (1997) Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. </span><span lang="en-GB"><em>Molecular Phylogenetics and Evolution</em></span><span lang="en-GB"> 7: 103–116. https://doi.org/10.1006/mpev.1996.0376</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Perera, R.H., Hyde, K.D., Perŝoh, D., Jones, E.B.G., Liu, J.K. &amp; Liu, Z.Y. (2018) Additions to wild seed and fruit fungi 1: the sexual morph of </span><span lang="en-GB"><em>Diaporthe rosae</em></span><span lang="en-GB"> on </span><span lang="en-GB"><em>Magnolia champaca</em></span><span lang="en-GB"> and Senna siamea fruits in Thailand. </span><span lang="en-GB"><em>Mycosphere</em></span><span lang="en-GB"> 9 (2): 256–270. https://doi.org/10.5943/mycosphere/9/2/7</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Rambaut, A. &amp; Drummond, A.J. (2008) FigTree: Tree figure drawing tool, version 1.2. 2.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Ronquist, F., Huelsenbeck, J. &amp; Teslenko, M. (2011) Draft MrBayes version 3.2. Manual: tutorials and model summaries. </span><span lang="en-GB"><em>Bioinformatics </em></span><span lang="en-GB">85–131.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Salakpetch, S. (2005) Rambutan Production in Thailand. </span><span lang="en-GB"><em>International Society for Horticultural Science</em></span><span lang="en-GB"> 665: 67–72. https://doi.org/10.17660/ActaHortic.2005.665.7</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Santos, J.M., Vrandečić, K., Ćosić, J., Duvnjak, T. &amp; Phillips, A.J.L. (2011) Resolving the </span><span lang="en-GB"><em>Diaporthe </em></span><span lang="en-GB">species occurring on soybean in Croatia. </span><span lang="en-GB"><em>Persoonia </em></span><span lang="en-GB">27: 9–19. https://doi.org/10.3767/003158511X603719</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Sebastiane, F.L.S., Lacava, P.T., Fávaro, L.C.L., Rodrigues, M.B.C. Araújo, W.L., Azevedo, J.L. &amp; Pizzirani-Kleiner, A.A. (2011) Genetic transformation of </span><span lang="en-GB"><em>Diaporthe phaseolorum</em></span><span lang="en-GB">, an endophytic fungus found in mangrove forests, mediated by Agrobacterium tumefaciens. </span><span lang="en-GB"><em>Current Genetics</em></span><span lang="en-GB"> 58: 21–33. https://doi.org/10.1007/s00294-011-0362-2</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Silvestro, D. &amp; Michalak, I. (2011) raxmlGUI: a graphical front-end for RAxML. </span><span lang="en-GB"><em>Organisms Diversity &amp; Evolution </em></span><span lang="en-GB">12: 335–337. https://doi.org/10.1007/s13127-011-0056-0</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Swofford, D. (2002) PAUP*: phylogenetic analysis using parsimony (*and other methods) Version 4.0b10. Sinauer, Sunderland.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Waiyawuthanapoom, P. &amp; Tirastittam, P. (2019) </span><span lang="en-GB"><em>The critical success factor of fruit distribution: case study of ratchaburi province, thailand.</em></span><span lang="en-GB"> The 2019 International Academic Multidisciplines Research Conference in Hokkaido 276.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Wanasinghe, D.N., Phukhamsakda, C., Hyde</span>,<span lang="en-GB"> K.D., Jeewon, R., Lee, H.B., Jones, E.B.G., Tibpromma, S., Tennakoon, D.S., Asha, J.D., Jayasiri, S.C., Gafforov, Y., Camporesi, E., Bulgakov, T.S., Ekanayake, A.H., Perera, R.H., Samarakoon, M.C., Goonasekara, I.D., Mapook, A., Li, Wen-Jing., Senanayake, I.C., Li, J., Norphanphoun, C., Doilom, M., Bahkali, A.H., Xu, J., Mortimer, P.E., Tibell, L., Tibell, S. &amp; Karunarathna, S.C. (2018) Fungal diversity notes 709–839: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on </span><span lang="en-GB"><em>Rosaceae</em></span><span lang="en-GB">. </span><span lang="en-GB"><em>Fungal Diversity</em></span><span lang="en-GB"> 89: 1–236. https://doi.org/10.1007/s13225-018-0395-7</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">White, T.J, Bruns, T., Lee</span>,<span lang="en-GB"> S. &amp; Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics.</span><span lang="en-GB"><em> In: </em></span><span lang="en-GB">Innis, MA, Gelfand, DH, Sninsky, J.J. &amp; White, T.J. (Eds.) </span><span lang="en-GB"><em>PCR protocols: a guide to methods and applications. </em></span><span lang="en-GB">Academic Press, New York, pp. 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1</span></span></span></span></p>