Indocalamus chongzhouensis (Poaceae: Bambusoideae), a new synonym of I. emeiensis: evidence from morphology and complete chloroplast genome data

LI-QIN GAO; YONG-LONG LI; CHUN-CE GUO; GUANG-YAO YANG; WEN-GEN ZHANG

doi:10.11646/phytotaxa.542.1.4

Issue: Vol. 542 No. 1: 1 April 2022

Type: Article

Published: 2022-04-01

DOI: 10.11646/phytotaxa.542.1.4

Page range: 53-63

Abstract views: 22

PDF downloaded: 1

Indocalamus chongzhouensis (Poaceae: Bambusoideae), a new synonym of I. emeiensis: evidence from morphology and complete chloroplast genome data

LI-QIN GAO⁺⁻
YONG-LONG LI⁺⁻
CHUN-CE GUO⁺⁻
GUANG-YAO YANG⁺⁻
WEN-GEN ZHANG⁺⁻

Jiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and Utilization, Forestry College, Jiangxi Agricultural University, Nanchang 330045, P. R. China; Nanchang Business College, Jiangxi Agricultural University, Gongqingcheng 332020, P. R. China

Jiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and Utilization, Forestry College, Jiangxi Agricultural University, Nanchang 330045, P. R. China

Gramineae Arundinarieae phylogeny SEM synonymization Monocots

Requires Subscription or Fee PDF (7MB)

Requires Subscription or Fee Supplemental file (XLSX)

Abstract

Based on evidence from morphology, micromorphology of the abaxial leaf epidermis and phylogenetic analysis by using complete chloroplast genome data, it was found that Indocalamus chongzhouensis is conspecific with I. emeiensis, and should be synonymized with the latter. An updated description, illustrations, and a distribution map are also provided.

References

Attigala, L., Wysocki, W.P., Duvall, M.R., Clark, L.G. (2016) Phylogenetic estimation and morphological evolution of Arundinarieae (Bambusoideae: Poaceae) based on plastome phylogenomic analysis. Molecular Phylogenetics and Evolution 101: 111–121. https://dx.doi.org/10.1016/j.ympev.2016.05.008
Bankevich, A., Nurk, S., Antipov, D., Gurevich, A.A., Dvorkin, M., Kulikov, A.S., Lesin, V.M., Nikolenko, S.I., Pham, S. & Prjibelski, A.D. (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. Journal of Computational Biology 19 (5): 455–477.  https://doi.org/10.1089/cmb.2012.0021
Chao, Q.S. & Chu, Z.D. (1981) New taxa and combinations of Bambusoideae in China. Journal of Nanjing Technological College of Forest Products 3: 33–44.
Chao, Q.S., Chu, Z.D. & Hsiung, W.Y. (1980) A revision of some genera and species of Chinese bamboos. Acta Phytotaxonomica Sinica 18 (1): 24–26.
Chen, X.Y., Hu, C.H., Yu, F.G. & Ruan, J.P. (1993) Micromorphology of leaf epidermis of Chimonobambusa (Bambusoideae, Gramineae). Acta Phytotaxonomica Sinica 31 (3): 227–235.
Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012) jModelTest 2: more models, new heuristics and parallel computing Nature Methods 9: 772.  https://doi.org/10.1038/nmeth.2109
Ellis, R.P. (1979) A procedure for standardizing comparative leaf anatomy in the Poaceae. II The epidermis as seen in surface view. Bothalia 12: 641–671.  https://dx.doi.org/10.4102/abc.v12i4.1441
Franchet, M.A. (1893) Fargesia, nouveau genre de Bambuseés de la Chine. Bulletin Mensuel de la Société Linnéenne de Paris 2: 1067–1069.
Gao, L.Q., Li, Y.L., Zhang, W.G. & Yang, G.Y. (2021) The complete chloroplast genome of Phyllostachys edulis f. curviculmis (Bambusoideae): a newly ornamental bamboo endemic to China. Mitochondrial DNA Part B 6 (3): 941–942.  https://doi.org/10.1080/23802359.2021.1888663
Guo, C., Guo, Z.H. & Li, D.Z. (2019) Phylogenomic analyses reveal intractable evolutionary history of a temperate bamboo genus (Poaceae: Bambusoideae). Plant Diversity 41: 213–219.  https://doi.org/10.1016/j.pld.2019.05.003
Guo, C., Ma, P.F., Yang, G.Q., Ye, X.Y., Guo, Y., Liu, J.X., Liu, Y.L., Deren, A.R., Guo, Z.H. & Li, D.Z. (2021) Parallel ddRAD and Genome Skimming Analyses Reveal a Radiative and Reticulate Evolutionary History of the Temperate Bamboos. Systematic Biology 70 (4): 756–773.  https://doi.org/10.1093/sysbio/syaa076
Hatusima, S. (1967) A new bamboo from southern Kyûsyû. The Journal of Geobotany 15 (4): 86–87.
Chia, L.Z. & Fung, X.L. (1980) On the validity of the genera Sinocalamus McClure and Lingnania McClure. Acta Phytotaxonomica Sinica 18 (2): 211–216.
Keng, P.C. (1957) One new genus and two new species of Chinese bamboos. Acta Phytotaxonomica Sinica 6 (4): 355–360.
Keng, P.C. & Hsueh, J.R. (1982) Ferrocalamus Hsueh & Keng f., a new bamboo genus in China. Journal of Bamboo Research 2 (1): 1–5.
Keng, Y.L. (1959) Flora Illustrata Plantarum Primarum Sinicarum (Gramineae), Version 1. Beijing: Science Press, pp. 13–21. [In Chinese]
Leandro, T.D., Scatena, V.L. & Clark, L.G. (2019) Comparative leaf blade anatomy and micromorphology in the systematics and phylogeny of Bambusoideae (Poaceae: Poales). Botanical Journal of the Linnean Society 192 (1): 165–183.  https://doi.org/10.1093/botlinnean/boz074
Ma, P.F., Vorontsova, M.S., Nanjarisoa, O.P., Razanatsoa, J., Guo, Z.H., Haevermans, T. & Li, D.Z. (2017) Negative correlation between rates of molecular evolution and flowering cycles in temperate woody bamboos revealed by plastid phylogenomics. BMC Plant Biology 17 (1): 260–275.  https://doi.org/10.1186/s12870-017-1199-8
Ma, P.F., Zhang, Y.X., Zeng, C.X., Guo, Z.H. & Li, D.Z. (2014) Chloroplast phylogenomic analyses resolve deep-level relationships of an intractable bamboo tribe Arundinarieae (Poaceae). Systematic Biology 63: 933–950.  https://doi.org/10.1093/sysbio/syu054
McClure, F.A. (1941) On some new and imperfectly known species of Chinese bamboos. Sunyatsenia 6: 32–35.
Munro, W. (1868) A monograph of the Bambusaceae, including descriptions of all the species. Transactions of the Linnean Society of London 26 (1): 152–153.
Murray, M.G. & Thompson, W.F. (1980) Rapid isolation of high weight plant DNA. Nucleic Acids Research 19 (8): 4321–4326.  https://doi.org/10.1093/nar/8.19.4321
Nakai, T. (1925) Two new genera of Bambusaceae, with special remarks on the related genera growing in eastern Asia. Journal of the Arnold Arboretum 6: 145–153.
Nguyen, L.T, Schmidt, H.A, Haeseler, A. & Minh, B.Q. (2014) IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology Evolution 32 (1): 268–274.  https://doi.org/10.1093/molbev/msu300
Qin, Q.M., Tong, Y.H., Zheng, X.R., Ni, J.B. & Xia, N.H. (2020) Sinosasa (Poaceae: Bambusoideae), a new genus from China. Taxon 70 (1): 1–21. https://doi.org/10.1002/tax.12422
Rendle, A.B. (1904) Gramineae. Journal of the Linnean Society. Botany 36: 437–438.
Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (12): 1572–1574.  https://doi.org/10.1093/bioinformatics/btg180
Shi, L.C., Chen, H.M., Jiang, M., Wang, L.J., Wu, X., Huang, L.F. & Liu, C. (2019) CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Research 47 (W1): W65–73.  https://doi.org/10.1093/nar/gkz345
Siebold, P.F. & Zuccarini, J.G. (1843) Plantarum quas in Japonia Collegit Dr. Ph. Fr. de Siebold Genera Nova, notis characteristicis delinaeationibusque illustrata proponunt. Abhandlungen der Mathematisch-Physikalischen Classe der Königlich Bayerischen Akademie der Wissenschaften 3 (3): 745–746.
Soderstrom, T.R. & Calderón, Cleofé E. (1978) The species of Chusquea (Poaceae: Bambusoideae) with verticillate buds. Brittonia 30 (2): 156–158.
Stapleton, C.M.A. (2004) Sarocalamus, a new Sino-Himalayan bamboo genus (Poaceae: Bambusoideae). Novon 14 (3): 346–347.
Stapleton, C.M.A. (2006) New taxa and combinations in cultivated bamboos (Poaceae: Bambusoideae) Sida 22 (1): 332.
Wang, Z.P. & Stapleton, C. (2006) Indocalamus. In: Wu, Z.Y., Raven, P.H. & Hong, D.Y. (Eds.) Flora of China, vol. 22. Beijing: Science Press; St. Louis: Missouri Botanical Garden Press, pp. 135–143.
Wen, T.H. (1982) A new genus and some new species of Bambusoideae from China. Journal of Bamboo Research 1 (1): 20–45.
Yang, B.M. (1981) A new species of Indocalamus from Hunan. Acta Phytotaxonomica Sinica 19 (2): 259–260.
Yang, Y.L. (1987) A revision of the genus Indocalamus of Bambusoideae from the world (Ⅰ). Journal of Nanjing University (Natural Sciences Edition) 23 (3): 453–462.
Yang, Y.L. (1993) The endemic genus of China: geographical distribution of Indocalamus Nakai. Journal of Plant Resources and Environment 2 (1): 41–44.
Yi, T.P., Shi, J.Y., Ma, L.S., Yang, L. & Wang, H.T. (2007) Indocalamus jingpingensis T. P. Yi & J. Y. Shi, a new species of the Gramineae from South Yunnan, China. Acta Phytotaxonomic Sinica 45 (5): 693–695.
Yi, T.P., Shi, J.Y., Ma, L.S., Wang, H.T. & Yang, L. (2008) Iconogra phia Bambusoidearum Sinicarum. Beijing: Science Press.
Yi, T.P. & Yang, L. (2004) A new species of Indocalamus Nakai from western Sichuan of China. Journal of Bamboo Research 23: 13–15.
Zhang, X.Z., Zeng, C.X., Ma, P.F., Haevermans, T., Zhang, Y.X., Zhang, L.N., Guo, Z.H. & Li, D.Z. (2016) Multi-locus plastid phylogenetic biogeography supports the Asian hypothesis of the temperate woody bamboos (Poaceae: Bambusoideae). Molecular Phylogenetics and Evolution 96: 118–129.  https://doi.org/10.1016/j.ympev.2015.11.025
Zhou, Y., Zhang, Y.Q., Hou, X.Q., Huang, L., Kang, J.Q., Zhang, J.Q. & Ren, Y. (2019) Phylogeny of Fargesia (Poaceae: Bambusoideae) and infrageneric adaptive divergence inferred from three cpDNA and nrITS sequence data. Plant Systematics and Evolution 305: 61–75.  https://doi.org/10.1007/s00606-018-1551-y
Zhang, Y.X., Guo, C. & Li, D.Z. (2020) A new subtribal classification of Arundinarieae (Poaceae, Bambusoideae) with the description of a new genus. Plant Diversity 42 (3): 127–134.  https://doi.org/10.1016/j.pld.2020.03.004
Zhang, Y.X., Zeng, C.X. & Li, D.Z. (2014) Scanning electron microscopy of the leaf epidermis in Arundinarieae (Poaceae: Bambusoideae): evolutionary implications of selected micromorphological features. Botanical Journal of the Linnean Society 176 (1): 46–65. https://doi.org/10.1111/boj.12192
Zhao, H.R. & Yang, Y.L. (1996) Bambusoideae. In: Keng, P.C. & Wang, Z.P. (Eds.) Flora Reipublicae Popularis Sinicae, vol. 9 (1). Beijing: Science Press, pp. 676–704.