Abstract
Dead stems of Hibiscus rosa-sinensis and Tithonia diversifolia were collected from Chiang Rai Province, in northern Thailand and examined for microfungi. Two species of Acrocalymma were observed. Multigene phylogenetic analyses of LSU, SSU and ITS sequences support their placement within Acrocalymmaceae. Acrocalymmaceae (Pleosporales), which includes the single genus, Acrocalymma. This genus is globally distributed and associated with diverse hosts. Acrocalymma is characterized by ostiolate ascomata, furcate, pedicellate asci, and hyaline to brown or pale reddish-brown, obovoid to ellipsoid ascospores. The asexual morph has smooth-walled conidiogenous cells and cylindric-clavate to fusiform, guttulate conidia with a helmet-shaped mucilaginous appendage at the apex. Based on morphology and molecular data, we report the new species Acrocalymma hibisci on H. rosa-sinensis and a new host record of A. medicaginis on T. diversifolia. Acrocalymma hibisci differs from other species by having seven-septate conidia. This study presents comprehensive descriptions and micrographs of the isolates along with multigene phylogenetic data.
References
- Alcorn, J.L. & Irwin, J.A.G. (1987) Acrocalymma medicaginis gen. et sp. nov. causing root and crown rot of Medicago sativa in Australia. Transactions of the British Mycological Society 88 (2): 163–167. https://doi.org/10.1016/S0007-1536(87)80211-5
- Ameen, F., AlNAdhari, S. & Al-Homaidan, A.A. (2022) Marine fungi showing multifunctional activity against human pathogenic microbes and cancer. Plos one 17 (11): e0276926. https://doi.org/10.1371/journal.pone.0276926
- Ariyawansa, H.A., Hyde, K.D., Jayasiri, S.C., Buyck, B., Chethana, K.W.T., Dai, D.Q., Dai, Y.C., Daranagama, D.A., Jayawardena, R.S., Lücking, R., Ghobad‑Nejhad, M., Niskanen, T., Thambugala, K.M., Voigt, K., Zhao, R.L., Li, G.J., Doilom, M., Boonmee, S., Yang, Z.L., Cai, Q., Cui, Y.Y., Bahkali, A.H., Chen, J., Cui, B.K., Chen, J.J., Dayarathne, M.C., Dissanayake, A.J., Ekanayaka, A.H., Hashimoto, A., Hongsanan, S., Jones, E.B.G., Larsson, E., Li, W.J., Li, Q.R., Liu, J.K., Luo, Z.L., Maharachchikumbura, S.S.N., Mapook, A., McKenzie, E.H.C., Norphanphoun, C., Konta, S., Pang, K.L., Perera, R.H., Phookamsak, R., Phukhamsakda, C., Pinruan, U., Randrianjohany, E., Singtripop, C., Tanaka, K., Tian, C.M., Tibpromma, S., Abdel‑Wahab, M.A., Wanasinghe, D.N., Wijayawardene, N.N., Zhang, J.F., Zhang, H., Abdel‑Aziz, F.A., Wedin, M., Westberg, M., Ammirati, J.F., Bulgakov, T.S., Lima, D.X., Callaghan, T.M., Callac, P., Chang, C.H., Coca, L.F., Dal‑Forno, M., Dollhofer, V., Fliegerová, K., Greiner, K., Griffith, G.W., Ho, H.M., Hofstetter, V., Jeewon, R., Kang, J.C., Kirk, P.M., Kytövuori, I., Lawrey, J.D., Xing, J., Li, H., Liu, Z.Y., Liu, X.Z., Liimatainen, K., Lumbsch, H.T., Matsumura, M., Moncada, B., Nuankaew, S., Parnmen, S., de Azevedo Santiago, A.L.C.M., Sommai, S., Song, Y., de Souza, C.A.F., de Souza‑Motta, C.M., Su, H.Y., Suetrong, S., Wang, Y., Wei, S.F., Wen, T.C., Yuan, H.S., Zhou, L.W., Réblová, M., Fournier, J., Camporesi, E., Luangsa‑ard, J.J., Tasanathai, K., Khonsanit, A., Thanakitpipattana, D., Somrithipol, S., Diederich, P., Millanes, A.M., Common, R.S., Stadler, M., Yan, J.Y., Li, X.H., Lee, H.W., Nguyen, T.T.T., Lee, H.B., Battistin, E., Marsico, O., Vizzini, A., Vila, J., Ercole, E., Eberhardt, U., Simonini, G., Wen, H.A., Chen, X.H., Miettinen, O., Spirin, V., Hernawati (2015) Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity 75: 27–274. https://doi.org/10.1007/s13225-015-0346-5
- Aveskamp, M.M., de Gruyter, J., Woudenberg, J.H.C., Verkley, G.J.M. & Crous, P.W. (2010) Highlights of the Didymellaceae: a polyphasic approach to characterise Phoma and related pleosporalean genera. Studies in Mycology 65 (1): 1–60. https://doi.org/10.3114/sim.2010.65.01
- Berbee, M.L., Strullu-Derrien, C., Delaux, P.M., Strother, P.K., Kenrick, P., Selosse, M.A. & Taylor, J.W. (2020) Genomic and fossil windows into the secret lives of the most ancient fungi. Nature Reviews Microbiology 18 (12): 717–730. https://doi.org/10.1038/s41579-020-0426-8
- Bhunjun, C.S., Phukhamsakda, C., Hyde, K.D., McKenzie, E.H.C., Saxena, R.K. & Li, Q. (2024) Do all fungi have ancestors with endophytic lifestyles? Fungal Diversity 125 (1): 73–98. https://doi.org/10.1007/s13225-023-00516-5
- Calabon, M.S., Jones, E.G., Boonmee, S., Li, W.J., Xiao, Y.P. & Hyde, K.D. (2023) Acrocalymmaceae (Pleosporales) from freshwater habitats in Thailand with the introduction of Acrocalymma bilobatum sp. nov. Studies in Fungi 8 (1). https://doi.org/10.48130/SIF-2023-0011
- Capella-Gutiérrez, S., Silla-Martínez, J.M. & Gabaldón, T. (2009) trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25 (15): 1972–1973. https://doi.org/10.1093/bioinformatics/btp348
- Chaiwan, N., Gomdola, D., Wang, S., Monkai, J., Tibpromma, S., Doilom, M., Wanasinghe, D.N., Motimer, P.E., Lumyong, S. & Hyde, K.D. (2021) An online database providing updated information of microfungi in the Greater Mekong Subregion. Mycosphere 12 (1): 1513–1526. https://doi.org/10.5943/mycosphere/12/1/19
- Chen, K.L. & Kirschner, R. (2018) Fungi from leaves of lotus (Nelumbo nucifera). Mycological Progress 17: 275–293. https://doi.org/10.1007/s11557-017-1324-y
- Chen, Q., Jiang, J.R., Zhang, G.Z., Cai, L. & Crous, P.W. (2015) Resolving the Phoma enigma. Studies in Mycology 82: 137–217. https://doi.org/10.1016/j.simyco.2015.10.003
- Chethana, K.W.T., Rathnayaka, A.R., Samarakoon, B.C., Wu, N., Wijesinghe, S.N., Yasanthika, W.A.E., Sysouphanthong, P., Thiyagaraja, V., Armand, A., Lestari, A.S., Madagammana, A.D., Ediriweera, A.N., Prematunga, C., Li, C.J.Y., Tennakoon, D.S., Gomdola, D., Marasinghe, D.S., Bundhun, D., Pem, D., Ren, G., Zhao, H. & Su, H.L. (2023) AJOM new records and collections of fungi: 151–200. Asian Journal of Mycology 6 (2): 89–243. https://doi.org/10.5943/ajom/6/2/7
- Crous, P.W., Shivas, R.G., Quaedvlieg, W., Van der Bank, M., Zhang, Y., Summerell, B.A., Guarro, J., Wingfield, M.J., Wood, A.R., Alfenas, A.C., Braun, U., Cano-Lira, J.F., García, D., Marin-Felix, Y., Alvarado, P., Andrade, J.P., Armengol, J., Assefa, A., den Breeÿen, A., Camele, I., Cheewangkoon, R., De Souza, J.T., Duong, T.A., Esteve-Raventós, F., Fournier, J., Frisullo, S., García-Jiménez, J., Gardiennet, A., Gené, J., Hernández-Restrepo, M., Hirooka, Y., Hospenthal, D.R., King, A., Lechat, C., Lombard, L., Mang, S.M., Marbach, P.A.S., Marincowitz, S., Marin-Felix, Y., Montaño-Mata, N.J., Moreno, G., Perez, C.A., Pérez Sierra, A.M., Robertson, J.L., Roux, J., Rubio, E., Schumacher, R.K., Stchigel, A.M., Sutton, D.A., Tan, Y.P., Thompson, E.H., Van der Linde, E., Walker, A.K., Walker, D.M., Wickes, B.L., Wong, P.T.W. & Groenewald, J.Z. (2014) Fungal Planet description sheets: 214–280. Persoonia 32 (1): 184–306. https://doi.org/10.3767/003158514X682395
- Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012) jModelTest 2: more models, new heuristics and high-performance computing. Nature Methods 9 (8): 772. https://doi.org/10.1038/nmeth.2109
- Das, K., Lee, S.Y., Choi, H.W., Eom, A.H., Cho, Y.J. & Jung, H.Y. (2020) Taxonomy of Arthrinium minutisporum sp. nov., Pezicula neosporulosa, and Acrocalymma pterocarpi: new records from soil in Korea. Mycobiology 48 (6): 450–463. https://doi.org/10.1080/12298093.2020.1830741
- De Gruyter, J., Aveskamp, M.M., Woudenberg, J.H., Verkley, G.J. & Crous, P.W. (2009) Molecular phylogeny of Phoma and allied anamorph genera: towards a reclassification of the Phoma complex. Mycological Research 113 (4): 508–519. https://doi.org/10.1016/j.mycres.2009.01.002
- de Silva, N.I., Hyde, K.D., Lumyong, S., Phillips, A.J.L., Bhat, D.J, Maharachchikumbura, S.S.N., Thambugala, K.M., Tennakoon, D.S., Suwannarach, N. & Karunarathna, S.C. (2022) Morphology, phylogeny, host association and geography of fungi associated with plants of Annonaceae, Apocynaceae and Magnoliaceae. Mycosphere 13 (1): 955–1076. https://doi.org/10.5943/mycosphere/13/1/12
- Dong, W., Wang, B., Hyde, K.D., McKenzie, E.H.C., Raja, H.A., Tanaka, K., Abdel‑Wahab, M.A., Abdel‑Aziz, F.A., Doilom, M., Phookamsak, R., Hongsanan, H., Wanasinghe, D.N., Yu, X.D., Wang, G.N., Yang, H., Yang, J., Thambugala, K.M., Tian, Q., Luo, Z.L., Yang, J.B., Miller, A.N., Fournier, J., Boonmee, S., Hu, D.M., Nalumpang, S. & Zhang, H. (2020) Freshwater Dothideomycetes. Fungal Diversity 105: 319–575. https://doi.org/10.1007/s13225-020-00463-5
- Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41 (41): 95–98.
- Hongsanan, S., Hyde, K.D., Phookamsak, R., Wanasinghe, D.N., McKenzie, E.H.C., Sarma, V.V., Boonmee, S., Lücking, R., Bhat, D.J., Liu, N.G., Tennakoon, D.S., Pem, D., Karunarathna, A., Jiang, S.H., Jones, E.B.G., Phillips, A.J.L., Manawasinghe, I.S., Tibpromma, S., Jayasiri, S.C., Sandamali, D.S., Jayawardena, R.S., Wijayawardene, N.N., Ekanayaka, A.H., Jeewon, R., Lu, Y.Z., Dissanayake, A.J., Zeng, X.Y., Luo, Z.L., Tian, Q., Phukhamsakda, C., Thambugala, K.M., Dai, D.Q., Chethana, K.W.T., Samarakoon, M.C., Ertz, D., Bao, D.F., Doilom, M., Liu, J.K., Pérez-Ortega, S., Suija, A., Senwanna, C., Wijesinghe, S.N., Konta, S., Niranjan, M., Zhang, S.N., Ariyawansa, H.A., Jiang, H.B., Zhang, J.F., Norphanphoun, C., de Silva, N.I., Thiyagaraja, V., Zhang, H., Bezerra, J.D.P., Miranda-González, R., Aptroot, A., Kashiwadani, H., Harishchandra, D., Sérusiaux, E., Aluthmuhandiram, J.V.S., Abeywickrama, P.D., Devadatha, B., Wu, H.X., Moon, K.H., Gueidan, C., Schumm, F., Bundhun, D., Mapook, A., Monkai, J., Chomnunti, P., Suetrong, S., Chaiwan, N., Dayarathne, M.C., Yang, J., Rathnayaka, A.R., Bhunjun, C.S., Xu, J.C., Zheng, J.S., Liu, G., Feng, Y. & Xie, N. (2020a) Refined families of Dothideomycetes: Dothideomycetidae and Pleosporomycetidae. Mycosphere 11 (1): 1553–2107. https://doi.org/10.5943/mycosphere/11/1/13
- Hongsanan, S., Hyde, K.D., Phookamsak, R., Wanasinghe, D.N., McKenzie, E.H.C., Sarma, V.V., Lücking, R., Boonmee, S., Bhat, J.D., Liu, N.G., Tennakoon, D.S., Pem, D., Karunarathna, A., Jiang, S.H., Jones, G.E.B., Phillips, A.J.L., Manawasinghe, I.S., Tibpromma, S., Jayasiri, S.C., Sandamali, D., Jayawardena, R.S., Wijayawardene, N.N, Ekanayaka, A.H., Jeewon, R., Lu, Y.Z., Phukhamsakda, C., Dissanayake, A.J., Zeng, X.Y., Luo, Z.L., Tian, Q., Thambugala, K.M., Dai, D., Samarakoon, M.C., Chethana, K.W.T., Ertz, D., Doilom, M., Liu, J.K., Pérez‑Ortega, S., Suija, A., Senwanna, C., Wijesinghe, S.N., Niranjan, M., Zhang, S.N., Ariyawansa, H.A., Jiang, H.B., Zhang, J.F., Norphanphoun, C., de Silva, N.I., Thiyagaraja, V., Zhang, H., Bezerra, J.D.P., Miranda‑González, R., Aptroot, A., Kashiwadani, H., Harishchandra, D., Sérusiaux, E., Abeywickrama, P.D., Bao, D.F., Devadatha, B., Wu, H.X., Moon, K.H., Gueidan, C., Schumm, F., Bundhun, D., Mapook, A., Monkai, J., Bhunjun, C.S., Chomnunti, P., Suetrong, S., Chaiwan, N., Dayarathne, M.C., Yang, J., Rathnayaka, A.R., Xu, J.C., Zheng, J., Liu, G., Feng, Y. & Xie, N. (2020b) Refined families of Dothideomycetes: orders and families incertae sedis in Dothideomycetes. Fungal Diversity 105: 17–318. https://doi.org/10.1007/s13225-020-00462-6
- Hyde, K.D., Jeewon, R., Chen, Y.J., Bhunjun, C.S., Calabon, M.S., Jiang, H.B., Lin, C.G., Norphanphoun, C., Sysouphanthong, P., Pem, D., Tibpromma, S., Zhang, Q., Doilom, M., Jayawardena, R.S., Liu, J.K., Maharachchikumbura, S.S.N., Phukhamsakda, C., Phookamsak, R., Al‑Sadi, A.M., Thongklang, N., Wang, Y., Gaforov, Y., Jones, E.B.G. & Lumyong, S. (2020) The numbers of fungi: is the descriptive curve flattening? Fungal Diversity 103: 219–271. https://doi.org/10.1007/s13225-020-00458-2
- Hyde, K.D, Anujani, G., Ashani, D.M., Bhunjun, C.S, Apurillo, C.S, Aumentado, H.D, Deecksha,G., Entaj, T., Liu, J.K., Xiao, Y., Faruk, S., Wang, Y., Achala, J.G, Linn, M.M., Tharindu, B., Merve, U., Naruemon, W., Naruemon, H.E, Pem, D., Nalin, N.W., Sergey, A.K, Madhara,K.W, Ishika, B., Loule, Marasinghe, D.S., Sinang, H., Nizamani, M.M., Meng, Q.F., Yasanthika, W.A.E., Vinodhini, T., Naritsada, T., Hongli, S., Ishara, S.M, Thilini, K.W.C., Li, C.J.Y., Liu, N.G., Lin, C.G., Chada, N., Maryam, F., Asghari, R., Ruvishika, S.J, Phukhamsakda, C., Calabon, M.S., Niranjan, M., Sarma, V.V., Nuwa, Samhita, M., Samhit, Doilom, M., Li, Y.X, Sajini, Soujit, S., Zaw, L.T., Saowaluck, T., Thakshila, S.A.D., Qing, T., Yinru, X., Senanayake, I.C, Thatsanee, L., Sabin, K., Veenavee, S., Dai, D.Q. & Le, L. (2023) Fungalpedia, an online database for the fungi and fungus-like taxa. Mycosphere 14: 1835–1959. https://doi.org/10.5943/mycosphere/14/1/22
- Hyde, K.D., Noorabadi, M.T., Thiyagaraja, V., He, M.Q., Johnston, P.R., Wijesinghe, S.N., Armand, A., Biketova, A.Y., Chethana, K.W.T., Erdoğdu, M., Ge, Z.W., Groenewald, J.Z., Hongsanan, S., Kušan, I., Leontyev, D.V., Li, D.W., Lin, C.G., Liu, N.G., Maharachchikumbura, S.S.N., Matočec, N., May, T.W., McKenzie, E.H.C., Mešić, A., Perera, R.H., Phukhamsakda, C., Piątek, M., Samarakoon, M.C., Selcuk, F., Senanayake, I.C., Tanney, J.B., Tian, Q., Vizzini, A., Wanasinghe, D.N., Wannasawang, N., Wijayawardene, N.N., Zhao, R.L., Abdel-Wahab, M.A., Abdollahzadeh, J., Abeywickrama, P.D., Abhinav, Absalan, S., Acharya, K., Afshari, N., Afshan, N.S., Afzalinia, S., Ahmadpour, S.A., Akulov, O., Alizadeh, A., Alizadeh, M., Al-Sadi, A.M., Alves, A., Alves, V.C.S., Alves-Silva, G., Antonín, V., Aouali, S., Aptroot, A., Apurillo, C.C.S., Arias, R.M., Asgari, B., Asghari, R., Assis, D.M.A., Assyov, B., Atienza, V., Aumentado, H.D.R., Avasthi, S., Azevedo, E., Bakhshi, M., Bao, D.F., Baral, H.O., Barata, M., Barbosa, K.D., Barbosa, R.N., Barbosa, F.R., Baroncelli, R., Barreto, G.G., Baschien, C., Bennett, R.M., Bera, I., Bezerra, J.D.P., Bhunjun, C.S., Bianchinotti, M.V., Błaszkowski, J., Boekhout, T., Bonito, G.M., Boonmee, S., Boonyuen, N., Bortnikov, F.M., Bregant, C., Bundhun, D., Burgaud, G., Buyck, B., Caeiro, M.F., Cabarroi-Hernández, M., Cai, M.F., Cai, L., Calabon, M.S., Calaça, F.J.S., Callalli, M., Câmara, M.P.S., Cano-Lira, J., Cao, B., Carlavilla, J.R., Carvalho, A., Carvalho, T.G., Castañeda-Ruiz, R.F., Catania, M.D.V., Cazabonne, J., Cedeño-Sanchez, M., Chaharmiri-Dokhaharani, S., Chaiwan, N., Chakraborty, N., Cheewankoon, R., Chen, C., Chen, J., Chen, Q., Chen, Y.P., Chinaglia, S., Coelho-Nascimento, C.C., Coleine, C., CostaRezende, D.H., Cortés-Pérez, A., Crouch, J.A., Crous, P.W., Cruz, R.H.S.F., Czachura, P., Damm, U., Darmostuk, V., Daroodi, Z., Das, K., Das, K., Davoodian, N., Davydov, E.A., da Silva, G.A., da Silva, I.R., da Silva, R.M.F., da Silva Santos, A.C., Dai, D.Q., Dai, Y.C., de Groot, D., De Kesel, A., De Lange, R., de Medeiros, E.V., de Souza, C.F.A., de Souza, F.A., dela Cruz, T.E.E., Decock, C., Delgado, G., Denchev, C.M., Denchev, T.T., Deng, Y.L., Dentinger, B.T.M., Devadatha, B., Dianese, J.C., Dima, B., Doilom, M., Dissanayake, A.J., Dissanayake, D.M.L.S., Dissanayake, L.S., Diniz, A.G., Dolatabadi, S., Dong, J.H., Dong, W., Dong, Z.Y., Drechsler-Santos, E.R., Druzhinina, I.S., Du, T.Y., Dubey, M.K., Dutta, A.K., Elliott, T.F., Elshahed, M.S., Egidi, E., Eisvand, P., Fan, L., Fan, X., Fan, X.L., Fedosova, A.G., Ferro, L.O., Fiuza, P.O., Flakus, A., Fonseca, E.O.W., Fryar, S.C., Gabaldón, T., Gajanayake, A.J., Gannibal, P.B., Gao, F., García-Sánchez, D., García-Sandoval, R., Garrido-Benavent, I., Garzoli, L., Gasca-Pineda, J., Gautam, A.K., Gené, J., Ghobad-Nejhad, M., Ghosh, A., Giachini, A.J., Gibertoni, T.B., Gentekaki, E., Gmoshinskiy, V.I., Góes-Neto, A., Gomdola, D., Gorjón, S.P., Goto, B.T., Granados-Montero, M.M., Griffith, G.W., Groenewald, M., Grossart, H.P., Gu, Z.R., Gueidan, C., Gunarathne, A., Gunaseelan, S., Guo, S.L., Gusmão, L.F.P., Gutierrez, A.C., Guzmán-Dávalos, L., Haelewaters, D., Haituk, H., Halling, R.E., He, S.C., Heredia, G., Hernández-Restrepo, M., Hosoya, T., Hoog, S.D., Horak, E., Hou, C.L., Houbraken, J., Htet, Z.H., Huang, S.K., Huang, W.J., Hurdeal, V.G., Hustad, V.P., Inácio, C.A., Janik, P., Jayalal, R.G.U., Jayasiri, S.C., Jayawardena, R.S., Jeewon, R., Jerónimo, G.H., Jin, J., Jones, E.B.G., Joshi, Y., Jurjević, Ž., Justo, A., Kakishima, M., Kaliyaperumal, M., Kang, G.P., Kang, J.C., Karimi, O., Karunarathna, S.C., Karpov, S.A., Kezo, K., Khalid, A.N., Khan, M.K., Khuna, S., Khyaju, S., Kirchmair, M., Klawonn, I., Kraisitudomsook, N., Kukwa, M., Kularathnage, N.D., Kumar, S., Lachance, M.A., Lado, C., Latha, K.P.D., Lee, H.B., Leonardi, M., Lestari, A.S., Li, C., Li, H., Li, J., Li, Q., Li, Y., Li, Y.C., Li, Y.X., Liao, C.F., Lima, J.L.R., Lima, J.M.S., Lima, N.B., Lin, L., Linaldeddu, B.T., Linn, M.M., Liu, F., Liu, J.K., Liu, J.W., Liu, S., Liu, S.L., Liu, X.F., Liu, X.Y., Longcore, J.E., Luangharn, T., Luangsa-ard, J.J., Lu, L., Lu, Y.Z., Lumbsch, H.T., Luo, L., Luo, M., Luo, Z.L., Ma, J., Madagammana, A.D., Madhushan, A., Madrid, H., Magurno, F., Magyar, D., Mahadevakumar, S., Malosso, E., Malysh, J.M., Mamarabadi, M., Manawasinghe, I.S., Manfrino, R.G., Manimohan, P., Mao, N., Mapook, A., Marchese, P., Marasinghe, D.S., Mardones, M., Marin-Felix, Y., Masigol, H., Mehrabi, M., Mehrabi-Koushki, M., Meiras-Ottoni, A., Melo, R.F.R., Mendes-Alvarenga, R.L., Mendieta, S., Meng, Q.F., Menkis, A., Menolli Jr, N., Mikšík, M., Miller, S.L., Moncada, B., Moncalvo, J.M., Monteiro, J.S., Monteiro, M., Mora-Montes, H.M., Moroz, E.L., Moura, J.C., Muhammad, U., Mukhopadhyay, S., Nagy, G.L., Najam ul Sehar, A., Najafiniya, M., Nanayakkara, C.M., Naseer, A., Nascimento, E.C.R., Nascimento, S.S., Neuhauser, S., Neves, M.A., Niazi, A.R., Yong, N., Nilsson, R.H., Nogueira, P.T.S., Novozhilov, Y.K., Noordeloos, M., Norphanphoun, C., Nuñez-Otaño, N., O’Donnell, R.P., Oehl, F., Oliveira, J.A., Oliveira Junior, I., Oliveira, N.V.L., Oliveira, P.H.F., Orihara, T., Oset, M., Pang, K.L., Papp, V., Pathirana, L.S., Peintner, U., Pem, D., Pereira, O.L., Pérez-Moreno, J., Pérez-Ortega, S., Péter, G., Pires-Zottarelli, C.L.A., Phonemany, M., Phongeun, S., Pošta, A., Prazeres, J.F.S.A., Quan, Y., Quandt, C.A., Queiroz, M.B., Radek, R., Rahnama, K., Raj, K.N.A., Rajeshkumar, K.C., Soumyadeep, R., Ralaiveloarisoa, A.B., Rämä, T., Ramírez-Cruz, V., Rambold, G., Rathnayaka, A.R., Raza, M., Ren, G.C., Rinaldi, A.C., Rivas-Ferreiro, M., Robledo, G.L., Ronikier, A., Rossi, W., Rusevska, K., Ryberg, M., Safi, A., Salimi, F., Salvador-Montoya, C.A., Samant, B., Samaradiwakara, N.P., Sánchez-Castro, I., Sandoval-Denis, M., Santiago, A.L.C.M.A., Santos, A.C.D.S., Santos, L.A. dos, Sarma, V.V., Sarwar, S., Savchenko, A., Savchenko, K., Saxena, R.K., Schoutteten, N., Selbmann, L., Ševčíková, H., Sharma, A., Shen, H.W., Shen, Y.M., Shu, Y.X., Silva, H.F., Silva-Filho, A.G.S., Silva, V.S.H., Simmons, D.R., Singh, R., Sir, E.B., Sohrabi, M., Souza, F.A., Souza-Motta, C.M., Sriindrasutdhi, V., Sruthi, O.P., Stadler, M., Stemler, J., Stephenson, S.L., Stoyneva-Gaertner, M.P., Strassert, J.F.H., Stryjak-Bogacka, M., Su, H., Sun, Y.R., Svantesson, S., Sysouphanthong, P., Takamatsu, S., Tan, T.H., Tanaka, K., Tang, C., Tang, X., Taylor, J.E., Taylor, P.W.J., Tennakoon, D.S., Thakshila, S.A.D., Thambugala, K.M., Thamodini, G.K., Thilanga, D., Thines, M., Tiago, P.V., Tian, X.G., Tian, W.H., Tibpromma, S., Tkalčec, Z., Tokarev, Y.S., Tomšovský, M., Torruella, G., Tsurykau, A., Udayanga, D., Ulukapı, M., Untereiner, W.A., Usman, M., Uzunov, B.A., Vadthanarat, S., Valenzuela, R., Van den Wyngaert, S., Van Vooren, N., Velez, P., Verma, R.K., Vieira, L.C., Vieira, W.A.S., Vinzelj, J.M., Tang, A.M.C., Walker, A., Walker, A.K., Wang, Q.M., Wang, Y., Wang, X.Y., Wang, Z.Y., Wannathes, N., Wartchow, F., Weerakoon, G., Wei, D.P., Wei, X., White, J.F., Wijesundara, D.S.A., Wisitrassameewong, K., Worobiec, G., Wu, H.X., Wu, N., Xiong, Y.R., Xu, B., Xu, J.P., Xu, R., Xu, R.F., Xu, R.J., Yadav, S., Yakovchenko, L.S., Yang, H.D., Yang, X., Yang, Y.H., Yang, Y., Yang, Y.Y., Yoshioka, R., Youssef, N.H., Yu, F.M., Yu, Z.F., Yuan, L.L., Yuan, Q., Zabin, D.A., Zamora, J.C., Zapata, C.V., Zare, R., Zeng, M., Zeng, X.Y., Zhang, J.F., Zhang, J.Y., Zhang, S., Zhang, X.C., Zhao, C.L., Zhao, H., Zhao, Q., Zhao, H., Zhao, H.J., Zhou, H.M., Zhu, X.Y., Zmitrovich, I.V., Zucconi, L. & Zvyagina, E. (2024a) The 2024 outline of fungi and fungus-like taxa. Mycosphere 15 (1): 5146–6239. https://doi.org/10.5943/mycosphere/15/1/25
- Hyde, K.D., Wijesinghe, S.N., Amuhenage, T.B., Bera, I., Bhunjun, C.S., Chethana, K.W.T., De Farias, A.R.G., Dong, W., Du, T.Y., Gao, Y., Gui, H., Gunarathne, A., Jayawardena, R.S., Li, H., Liu, J.K., Madagammana, A.D., Manawasinghe, I.S., Mapook, A., Mukhopadhyay, S., Niranjan, M., Phukhamsakda, C., Ren, G.C., Senanayake, I.C., Shu, Y.X., Thakshila, S.A.D., Thongklang, N., Tibpromma, S., Tun, Z.L., Wu, N., Xiong, Y.R., Xu, R.F., Yang, Y.H. & Zhao, H.J. (2024b) Current Research in Applied and Environmental Mycology Fungal Profiles 1–30. Current Research in Environmental & Applied Mycology (Journal of Fungal Biology) 14 (1): 167–266. https://doi.org/10.5943/cream/14/1/11
- Jayasiri, S.C., Hyde, K.D., Ariyawansa, H.A., Bhat, D.J., Buyck, B., Cai, L., Dai, Y.-C., Abd-Elsalam, K.A., Ertz, D., Hidayat, I., Jeewon, R., Jones, E.B.G., Bahkali, A.H., Karunarathna, S.C., Liu, J.-K., Luangsa-ard, J.J., Lumbsch, H.T., Maharachchikumbura, S.S.N., McKenzie, E.H.C., Moncalvo, J.-M., Ghobad-Nejhad, M., Nilsson, H., Pang, K.-L., Pereira, O.L., Phillips, A.J.L., Raspé, O., Rollins, A.W., Romero, A.I., Etayo, J., Selçuk, F., Stephenson, S.L., Suetrong, S., Taylor, J.E., Tsui, C.K.M. & Vizzini, A. (2015) The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. Fungal Diversity 74: 3–18. https://doi.org/10.1007/s13225-015-0351-8
- Jayasiri, S.C., Hyde, K.D., Jones, E.B.G., McKenzie, E.H.C., Jeewon, R., Phillips, A.J.L., Bhat, D.J., Wanasinghe, D.N., Liu, J.K., Lu, Y.Z., Kang, J.C., Xu, J. & Karunarathna, S.C. (2019) Diversity, morphology and molecular phylogeny of Dothideomycetes on decaying wild seed pods and fruits. Mycosphere 10 (1): 1–186. https://doi.org/10.5943/mycosphere/10/1/1
- Katoh, K., Rozewicki, J. & Yamada, K.D. (2019) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20 (4): 1160–1166. https://doi.org/10.1093/bib/bbx108
- Konta, S., Tibpromma, S., Karunarathna, S.C., Samarakoon, M.C., Steven, L.S., Mapook, A., Boonmee, S., Senwanna, C., Balasuriya, A. & Eungwanichayapant, P.D. & Hyde, K.D. (2023) Morphology and multigene phylogeny reveal ten novel taxa in Ascomycota from terrestrial palm substrates (Arecaceae) in Thailand. Mycosphere 14 (1): 107–152. https://doi.org/10.5943/mycosphere/14/1/2
- Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution 35 (6): 1547–1549. https://doi.org/10.1093/molbev/msy096
- Li, W.L., Liang, R.R., Dissanayake, A.J. & Liu, J.K. (2023) Mycosphere notes 413–448: Dothideomycetes associated with woody oil plants in China. Mycosphere 14 (1): 1436–1529. https://doi.org/10.5943/mycosphere/14/1/16
- Liu, Y.W. & Zeng, X.Y. (2022) Acrocalymma chuxiongense sp. nov., a new species of Acrocalymmaceae (Pleosporales) on leaves of Quercus. Biodiversity Data Journal 10. https://doi.org/10.3897/BDJ.10.e89635
- Lofgren, L.A., LeBlanc, N.R., Certano, A.K., Nachtigall, J., LaBine, K.M., Riddle, J., Broz, K., Dong, Y., Bethan, B., Kafer, C.W. & Kistler, H.C. (2018) Fusarium graminearum: pathogen or endophyte of North American grasses? New Phytologist 217 (3): 1203–1212. https://doi.org/10.1111/nph.14894
- Lücking, R., Aime, M.C., Robbertse, B., Miller, A.N., Ariyawansa, H.A., Aoki, T., Cardinali, G., Crous, P.W., Druzhinina, I.S., Geiser, D.M., Hawksworth, D.L., Hyde, K.D., Irinyi, L., Jeewon, R., Johnston, P.R., Kirk, P.M., Malosso, E., May, T.W., Meyer, W., Öpik, M., Robert, V., Stadler, M., Thines, M., Vu, D. & Yurkov, A.M. & Zhang, N. & Schoch, C.L. (2020) Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding? IMA Fungus 11 (1): 14. https://doi.org/10.1186/s43008-020-00033-z
- Manawasinghe, I.S., Hyde, K.D., Wanasinghe, D.N., Karunarathna, S.C., Maharachchikumbura, S.S.N., Samarakoon, M.C., Voglmayr, H., Pang, K.L., Chiang, M.W.L., Jones, E.B.G., Saxena, R.K., Kumar, A., Rajeshkumar, K.C., Selbmann, L., Coleine, C., Hu, Y., Ainsworth, A.M., Liimatainen, K., Niskanen, T., Ralaiveloarisoa, A., Arumugam, E., Kezo, K., Kaliyaperumal, M., Gunaseelan, S., Dissanayake, A.J., Khalid, A.N., Gajanayake, A.J., Flakus, A., Armand, A., Aptroot, A., Rodrigues, A., Tsurykau, A., López Villalba, Á., Gomes de Farias, A.R., Sánchez, A., Góes Neto, A., Goto, B.T., de Souza, C.A.F., Chuaseeharonnachai, C., Lin, C.G., Li, C., Denchev, C.M., Mateo, D.G., Tennakoon, D.S., Wei, D.P., Begerow, D., Alves, E., Drechsler Santos, E.R., Sousa, E.S., Medeiros, E.V., Langer, E., Zhang, F., de Souza, F.A., Magurno, F., Barreto, G.G., Moreno, G., Mane, G., Silva, G.A., da Silva, G.A., Xia, G., Shen, H.W., Gui, H., Senanayake, I.C., Luangsa-ard, J.J., Liu, J.W., Liu, J.K., Ma, J., Lin, J.Y., Beserra Jr, J.E.A., Cano Lira, J.F., Gené, J., Harikrishnan, K., Lu, L., dos Santos, L.A., Xu, L., Lacerda, L.T., Gusmão, L.F.P., Cáceres, M.E.S., Câmara, M.P.S., de Barros Barreto, M.B.B., Calabon, M.S., Kukwa, M., Kemler, M., de Melo, M.P., Ghobad-Nejhad, M., Luo, M., Ding, M., Doilom, M., Phonemany, M., Usman, M., Thongklang, N., Boonyuen, N., Ashtekar, N., Kularathnage, N.D., Sruthi, O.P., Kwantong, P., Ansil, P.A., Kooij, P.W., Zhao, Q., Alfenas, R.F., de Oliveira, R.J.V., Singh, R., da Silva, R.M.F., Avchar, R., Morey, R., Sharma, R., Xu, R.J., da Silveira, R.M.B., Xu, R.F., Jayawardena, R.S., Nanu, S., Nuankaew, S., Tibpromma, S., Boonmee, S., Somrithipol, S., Varghese, S., Moreira, S.I., Rajwar, S., He, S.C., Arun Kumar, T.K., Denchev, T.T., Luangharn, T., de Oliveira, T.G.L., Du, T.Y., Wen, T.-C., Du, T., Wu, T., Indrasutdhi, V.S., Doyle, V.P., Baulin, V., Dong, W., Li, W.L., Lu, W.H., Tian, W., Vieira, W.A., von Brackel, W., Yu, X.D., Zhang, X., Liu, X.F., Peng, X.C., Chen, Y., Yang, Y., Gao, Y., Xiong, Y., Shu, Y., Lu, Y.Z., Shen, Y.M., Zhou, Y., Zhang, Y.X., Zhang, W., Luo, Z.L., Madushani, M.A., Cheewangkoon, R., Song, J.G. & Xu, B. (2025) Fungal diversity notes 1818–1918: taxonomic and phylogenetic contributions on genera and species of fungi. Fungal Diversity 130 (1): 1–261. https://doi.org/10.1007/s13225-024-00541-y
- Mapook, A., Hyde, K.D., McKenzie, E.H.C., Jones, E.B.G., Bhat, D.J., Jeewon, R., Stadler, M., Samarakoon, M.C., Malaithong, M., Tanunchai, B., Buscot, F., Wubet, T. & Purahong, W. (2020) Taxonomic and phylogenetic contributions to fungi associated with the invasive weed Chromolaena odorata (Siam weed). Fungal Diversity 101: 1–175. https://doi.org/10.1007/s13225-020-00444-8
- Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: 2010 Gateway Computing Environments Workshop (GCE), New Orleans, USA. pp. 1–8. https://doi.org/10.1109/GCE.2010.5676129
- Mortimer, P.E., Jeewon, R., Xu, J.C., Lumyong, S. & Wanasinghe, D.N. (2021) Morpho-phylo taxonomy of novel dothideomycetous fungi associated with dead woody twigs in Yunnan Province, China. Frontiers in Microbiology 12: 654683. https://doi.org/10.3389/fmicb.2021.654683
- Nguyen, L.T., Schmidt, H.A., Von Haeseler, A. & Minh, B.Q. (2015) IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32 (1): 268–274. https://doi.org/10.1093/molbev/msu300
- Niego, A.G.T., Lambert, C., Mortimer, P., Thongklang, N., Rapior, S., Grosse, M., Schrey, H., Charria Girón, E., Walker, A., Hyde, K.D. & Stadler, M. (2023) The contribution of fungi to the global economy. Fungal Diversity 121 (1): 95–137. https://doi.org/10.1007/s13225-023-00520-9
- Phukhamsakda, C., McKenzie, E.H.C., Phillips, A.J.L., Jones, E.B.G., Bhat, D.J., Stadler, M., Bhunjun, C.S., Wanasinghe, D.N., Thongbai, B., Camporesi, E., Ertz, D., Jayawardena, R.S., Perera, R.H., Ekanayake, A.H., Tibpromma, S., Doilom, M. & Hyde, K.D. (2020) Microfungi associated with Clematis (Ranunculaceae) with an integrated approach to delimiting species boundaries. Fungal Diversity 102: 1–203. https://doi.org/10.1007/s13225-020-00448-4
- Promputtha, I., Jeewon, R., Lumyong, S. & McKenzie, E.H. (2005) Ribosomal DNA fingerprinting in the identification of nonsporulating endophytes from Magnolia liliifera (Magnoliaceae). Fungal Diversity 20: 167–186.
- Promputtha, I., Hyde, K.D., McKenzie, E.H., Peberdy, J.F. & Lumyong, S. (2010) Can leaf degrading enzymes provide evidence that endophytic fungi becoming saprobes? Fungal Diversity 41: 89–99. https://doi.org/10.1007/s13225-010-0024-6
- Rambaut, A. (2012) FigTree v1.4.0. University of Oxford. Available from: [http://tree.bio.ed.ac.uk/software/figtree]
- Rehner, S.A. & Buckley, E. (2005) A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97 (1): 84–98. https://doi.org/10.3852/mycologia.97.1.84
- Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L. & Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61 (3): 539–542. https://doi.org/10.1093/sysbio/sys029
- Senanayake, I.C., Rathnayaka, A.R., Marasinghe, D.S., Calabon, M.S., Gentekaki, E., Lee, H.B., Hurdeal, V.G., Pem, D., Dissanayake, L.S., Wijesinghe, S.N., Bundhun, D., Nguyen, T.T., Goonasekara, I.D., Abeywickrama, P.D., Bhunjun, C.S., Jayawardena, R.S., Wanasinghe, D.N., Jeewon, R., Bhat, D.J. & Xiang, M.M. (2020) Morphological approaches in studying fungi: collection, examination, isolation, sporulation and preservation. Mycosphere 11 (1): 2678–2754. https://doi.org/10.5943/mycosphere/11/1/20
- Shao, Q.Y., Qi, Y.H., Wang, J., Yang, Y.M., Zhang, Z.Y., Chen, W.H., Liang, J.D., Liang, Z.Q. & Han, Y.F. (2022) Acrocalymma guizhouense sp. nov. (Acrocalymmaceae, Dothideomycetes) from soil in China. Phytotaxa 558 (2): 229–236. https://doi.org/10.11646/phytotaxa.558.2.6
- Tennakoon, D.S., Kuo, C.H., Maharachchikumbura, S.S.N., Thambugala, K.M., Gentekaki, E., Phillips, A.J.L., Bhat, D.J., Wanasinghe, D.N., de Silva, N.I., Promputtha, I. & Hyde, K.D. (2021) Taxonomic and phylogenetic contributions to Celtis formosana, Ficus ampelas, F. septica, Macaranga tanarius and Morus australis leaf litter inhabiting microfungi. Fungal Diversity 108 (1): 1–215. https://doi.org/10.1007/s13225-021-00474-w
- Trakunyingcharoen, T., Lombard, L., Groenewald, J.Z., Cheewangkoon, R., Toanun, C., Alfenas, A.C. & Crous, P.W. (2014) Mycoparasitic species of Sphaerellopsis, and allied lichenicolous and other genera. IMA Fungus 5: 391–414. https://doi.org/10.5598/imafungus.2014.05.02.05
- Valenzuela-Lopez, N., Sutton, D.A., Cano-Lira, J.F., Paredes, K., Wiederhold, N., Guarro, J. & Stchigel, A.M. (2017) Coelomycetous fungi in the clinical setting: morphological convergence and cryptic diversity. Journal of Clinical Microbiology 55 (2): 552–567. https://doi.org/10.1128/JCM.02221-16
- Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172 (8): 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
- Vu, D., Groenewald, M., de Vries, M., Gehrmann, T., Stielow, B., Eberhardt, U., Al-Hatmi, A., Groenewald, J.Z., Cardinali, G., Houbraken, J., Boekhout, T., Crous, P.W., Robert, V. & Verkley, G.J.M. (2019) Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom Fungi and reveals thresholds for fungal species and higher taxon delimitation. Studies in Mycology 92 (1): 135–154. https://doi.org/10.1016/j.simyco.2018.05.001
- Wang, G., Zhang, G., Lv, X., Wang, Y., Long, Y., Wang, X. & Liu, H. (2023) First complete mitogenome of Massarineae and its contribution to phylogenetic implications in Pleosporales. Scientific Reports 13 (1): 22431. https://doi.org/10.1038/s41598-023-49822-7
- Westphal, A., Xing, L. & Goodwin, S.B. (2011) Mature watermelon vine decline: suppression with fumigants of a soil-borne problem and association with Rhizopycnis vagum. Crop Protection 30 (2): 111–117. https://doi.org/10.1016/j.cropro.2010.11.014
- White, T.J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocols: A guide to methods and applications/Academic Press. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Zhang, Y., Wang, H.K., Fournier, J., Crous, P.W., Jeewon, R. & Pointing, S.B. & Hyde, K.D. (2009) Towards a phylogenetic clarification of Lophiostoma / Massarina and morphologically similar genera in the Pleosporales. Fungal Diversity 38: 225–251.
- Zhang, H., Hyde, K.D., McKenzie, E.H., Bahkali, A.H. & Zhou, D. (2012) Sequence data reveals phylogenetic affinities of Acrocalymma aquatica sp. nov., Aquasubmersa mircensis gen. et sp. nov. and Clohesyomyces aquaticus (freshwater coelomycetes). Cryptogamie, Mycologie 33 (3): 333–346. https://doi.org/10.7872/crym.v33.iss3.2012.333
- Zhou, D. & Hyde, K.D. (2001) Host-specificity, host-exclusivity, and host-recurrence in saprobic fungi. Mycological Research 105 (12): 1449–1457. https://doi.org/10.1017/S0953756201004713
