Abstract
This research is devoted to the study of the Mallomonas mangofera species complex in a tropical region using electron microscopy and molecular methods. In this work, three Mallomonas strains from Vietnam, morphologically similar to M. mangofera and M. foveata, were studied. Two new clades were identified based on the SSU rDNA + rbcL cpDNA and ITS1-5.8S-ITS2 rDNA datasets. Two new species, Mallomonas sagittifera and M. trifonovae, were described from Vietnam based on molecular characteristics and morphological analysis of the scale and bristle ultrastructure. The distribution of these taxa was analysed using the information of strains origin, analysis of previously made records and a metabarcoding approach. Mallomonas sagittifera was found in 5 localities in 4 provinces, and M. trifonovae was found in 4 localities in 4 provinces in Vietnam.
References
- Andersen, R.A. (2005) Algal Culturing Techniques. Elsevier Academic Press, Oxford, 589 pp.
- Belevich, T.A., Ilyash, L.V., Milyutina, I.A., Logacheva, M.D., Goryunov, D.V. & Troitsky, A.V. (2015) Metagenomic analyses of White Sea picoalgae: first data. Biochemistry (Moscow) 80: 1514–1521. https://doi.org/10.1134/S0006297915110140
- Chernomor, O., von Haeseler, A. & Minh, B.Q. (2016) Terrace aware data structure for phylogenomic inference from supermatrices. Syst. Biol. 65: 997–1008. https://doi.org/10.1093/sysbio/syw037
- Choi, B., Son, M., Kim, J.I. & Shin, W. (2013) Taxonomy and phylogeny of the genus Cryptomonas (Cryptophyceae, Cryptophyta) from Korea. Algae 28 (4): 307–330. https://doi.org/10.4490/algae.2013.28.4.307
- Cronberg, G. (1989) Stomatocysts of Mallomonas hamata and M. heterospina (Mallomonadaceae, Synurophyceae) from south Swedish lakes. Nordic Journal of Botany 8: 683–692. https://doi.org/10.1111/j.1756-1051.1989.tb01745.x
- Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9 (8): 1–772. https://doi.org/10.1038/nmeth.2109
- Daugbjerg, N. & Andersen, R.A. (1997) Phylogenetic analysis of the rbcL sequences from haptophytes and heterokont algae suggest their chloroplasts are unrelated. Molecular Biology and Evolution 14 (12): 1242–1251. https://doi.org/10.1093/oxfordjournals.molbev.a025733
- Dürrschmidt, M. (1983) A taxonomic study of the Mallomonas mangofera group (Mallomonadaceae, Chrysophyceae), including the description of four new taxa. Plant Systematics and Evolution 143: 175–196. https://doi.org/10.1007/BF00986377
- Dürrschmidt, M. & Croome, R. (1985) Mallomonadaceae (Chrysophyceae) from Malaysia and Australia. Nordic Journal of Botany 5: 285–298. https://doi.org/10.1111/j.1756-1051.1985.tb01657.x
- Gusev, E.S. (2015) A new species of the genus Mallomonas (Synurales, Chrysophyceae), Mallomonas fimbriata sp. nov. Phytotaxa 195: 291–296. https://doi.org/10.11646/phytotaxa.195.4.4
- Gusev, E. & Martynenko, N. (2022) Diversity of Silica‐Scaled Chrysophytes in Central Vietnam. Water 14: 1–21. https://doi.org/10.3390/w14010065
- Gusev, E.S., Doan-Nhu, H. & Nguyen-Ngoc, L. (2017) Silica-scaled chrysophytes from Cat Tien National Park (Dong Nai Province, Viet Nam). Nova Hedwigia 105: 347–364. https://doi.org/10.1127/nova_hedwigia/2017/0416
- Gusev, E.S., Čertnerová, D., Škaloudová, M. & Škaloud, P. (2018) Exploring cryptic diversity and distribution patterns in the Mallomonas kalinae/rasilis species complex with a description of a new taxon—Mallomonas furtiva sp. nov. Journal of Eukaryotic Microbiology 65 (1): 38–47. https://doi.org/10.1111/jeu.12427
- Gusev, E.S., Doan-Nhu, H., Nguyen-Ngoc, L., Guseva, E.E. & Luom, P.T. (2019a) Silica-scaled chrysophytes from Cam Ranh Peninsula (Khanh Hoa Province, Vietnam). Nova Hedwigia Beiheft 148: 63–76. https://doi.org/10.1127/nova-suppl/2019/077
- Gusev, E., Guseva, E., Kezlya, E. & Kulikovskiy, M. (2019b) Mallomonas minuscula sp. nov. (Synurales, Chrysophyceae), a new member in the section Torquatae from Vietnam. Fottea 19 (2): 132–137. https://doi.org/10.5507/fot.2019.004
- Gusev, E., Martynenko, N. & Tran, H. (2021) Studies on Algae from the Order Synurales (Chrysophyceae) in Northern Vietnam. Diversity 13: 1–14. https://doi.org/10.3390/d13110602
- Gusev, E., Guseva, E., Dien, T.D. & Kulikovskiy, M. (2022a) Flora of silica-scaled chrysophytes (Chrysophyceae) of two provinces in Southern Vietnam. Inland Water Biology 15: 205–216. https://doi.org/10.1134/S1995082922030063
- Gusev, E., Kapustin, D., Shkurina, N., Martynenko, N. & Phan Trong Huan (2022b) Mallomonas fragariformis sp. nov. (Synurales, Chrysophyceae), a new tropical chrysophyte species. Phytotaxa 5671 (1): 123–130. https://doi.org/10.11646/phytotaxa.576.1.8
- Gusev, E., Martynenko, N., Shkurina, N., Huan, P.T., Dien, T.D. & Thanh, N.T.H. (2023) An annotated checklist of algae from the order Synurales (Chrysophyceae) of Viet Nam. Diversity 15 (2): 183. https://doi.org/10.3390/d15020183
- Gusev, E., Shkurina, N. & Martynenko, N. (2024a) Phylogenetic position, typification and emended description of Mallomonas matvienkoae (Chrysophyceae, Synurales). Phytotaxa 660 (2): 112–122. https://doi.org/10.11646/phytotaxa.660.2.2
- Gusev, E.S., Safronova, T.V., Podunay, Y.А., Tran, H. & Martynenko, N.A. (2024b) Hidden diversity in the Mallomonas pseudomatvienkoae species complex (Synurales, Chrysophyceae) and description of two new species. Phycologia 63 (6): 544–557. https://doi.org/10.1080/00318884.2024.2430034
- Gusev, E., Martynenko, N., Tran, H. & Podunay, Y. (2024c) Two new species of the Mallomonas mangofera species complex (Synurales, Chrysophyceae) from the tropics based on morphological and molecular studies. Phytotaxa 678 (1): 17–32. https://doi.org/10.11646/phytotaxa.678.1.2
- Gusev, E., Martynenko, N., Podunay, Y. & Kuzmin, D. (2024d) Morphology, phylogenetic position and distribution of Mallomonas mangofera and Mallomonas foveata comb. et stat. nov. (Synurales, Chrysophyceae). Phytotaxa 662 (3): 224–38. https://doi.org/10.11646/phytotaxa.662.3.2
- Gusev, E., Podunay, Y., Martynenko, N., Tran, H. & Kuzmin, D. (2024e) Mallomonas gemina comb. et stat. nov. (Synurales, Chrysophyceae)—a new combination based on molecular studies. Phytotaxa 665 (3): 221–32. https://doi.org/10.11646/phytotaxa.665.3.4
- Gusev, E., Ignatenko, M. & Yatsenko-Stepanova, T. (2024f) Mallomonas uralensis sp. nov. (Ch Chrysophyceae, Synurales), a new species of the genus Mallomonas from the section Torquatae. Phytotaxa 655 (3): 293–300. https://doi.org/10.11646/phytotaxa.655.3.7
- Hamby, R.K., Sims, L., Issel, L. & Zimmer, E. (1988) Direct ribosomal RNA sequencing: optimization of extraction and sequencing methods for work with higher plants. Plant Molecular Biology Reporter 6: 175–192. https://doi.org/10.1007/BF02669591
- Hansen, P. & Kristiansen, J. (1995) Mallomonas madagascariensis, M. lemuriocellata and M. crocodilorum (Synurophyceae), three new species from Madagascar. Nordic Journal of Botany 15: 215–223. https://doi.org/10.1111/j.1756-1051.1995.tb00146.x
- Harris, K. & Bradley, D.E. (1960) A taxonomic study of Mallomonas. Journal of General Microbiology 22: 750–777. https://doi.org/10.1099/00221287-22-3-750
- Jeong, M., Kim, J.I., Jo, B.Y., Kim, H.S., Siver, P.A. & Shin, W. (2019) Surviving the marine environment: two new species of Mallomonas (Synurophyceae). Phycologia 58 (3): 276–286. https://doi.org/10.1080/00318884.2019.1565718
- Jo, B.Y., Shin, W., Boo, S.M., Kim, H.S. & Siver, P.A. (2011) Studies on ultrastructure and three-gene phylogeny of the genus Mallomonas (Synurophyceae). Journal of Phycology 47: 415–425. https://doi.org/10.1111/j.1529-8817.2010.00953.x
- Jo, B.Y., Shin, W., Kim, H.S., Siver, P.A. & Andersen, R.A. (2013) Phylogeny of the genus Mallomonas (Synurophyceae) and descriptions of five new species on the basis of morphological evidence. Phycologia 52: 266–278. https://doi.org/10.2216/12-107.1
- Jo, B.Y., Kim, J.I., Škaloud, P., Siver, P.A. & Shin, W. (2016) Multigene phylogeny of Synura (Synurophyceae) and descriptions of four new species based on morphological and DNA evidence. European Journal of Phycology 51 (4): 413–430. https://doi.org/10.1080/09670262.2016.1201700
- Katana, A., Kwiatowski, J., Spalik, K., Zakryś, B., Szalacha, E. & Szymańska, H. (2001) Phylogenetic position of Koliella (Chlorophyta) as inferred from nuclear and chloroplast small subunit rDNA. Journal of Phycology 37 (3): 443–451. https://doi.org/10.1046/j.1529-8817.2001.037003443.x
- Katoh, K., Rozewicki, J. & Yamada, K.D. (2019) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in bioinformatics 20 (4): 1160–1166. https://doi.org/10.1093/bib/bbx108
- Kim, J.H. & Kim, H.S. (2010) Mallomonas jejuensis sp. nov. (Synurophyceae) from Jeju Island, South Korea. Nordic Journal of Botany 28: 350–353. https://doi.org/10.1111/j.1756-1051.2009.00600.x
- Kim, H.S., Kim, J.H., Shin, W. & Jo, B.Y. (2014) Mallomonas elevata sp. nov. (Synurophyceae), a new scaled Chrysophyte from Jeju Island, South Korea. Nova Hedwigia 98: 89–102. https://doi.org/10.1127/0029-5035/2013/0138
- Kristiansen, J. (2000) Cosmopolitan chrysophytes. Systematics and Geography of Plants 70: 291–300. https://doi.org/10.2307/3668648
- Kristiansen, J. & Preisig, H.R. (2007) Chrysophyte and Haptophyte Algae: 2 Teil/2nd Part: Synurophyceae. Spektrum Akademischer Verlag, Heidelberg, 252 pp.
- Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. (2018) MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology and Evolution 35: 1547–1549. https://doi.org/10.1093/molbev/msy096
- McFadden, G.I. & Melkonian, M. (1986) Use of Hepes buffer for microalgal culture media and fixation for electron microscopy. Phycologia 25: 551–557. https://doi.org/10.2216/i0031-8884-25-4-551.1
- Martynenko, N., Shkurina, N. & Gusev, E. (2024) Description of the new species Mallomonas okhapkinii (Synurales, Chrysophyceae) based on morphological and molecular data. Phytotaxa 670 (1): 63–71. https://doi.org/10.11646/phytotaxa.670.1.6
- Minh, B.Q., Schmidt, H.A., Chernomor, O., Schrempf, D., Woodhams, M.D., von Haeseler, A. & Lanfear, R. (2020) IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era. Molecular Biology and Evolution 37: 1530–1534. https://doi.org/10.1093/molbev/msaa015
- Momeu, L. & Péterfi, L.S. (1979) Taxonomy of Mallomonas based on the fine structure of the scales and bristles. Contribuţii Botanice Cluj-Napoca 1979: 13–20.
- Patova, E., Novakovskaya, I., Gusev, E. & Martynenko, N. (2023) Diversity of Cyanobacteria and Algae in biological soil crusts of the Northern Ural mountain region assessed through morphological and metabarcoding approaches. Diversity 15: 1080. https://doi.org/10.3390/d15101080
- Perty, M. (1852) Zur Kenntniss kleinster Lebensformen nach Bau, Funktionen, Systematik, mit Specialverzeichniss der in der Schweiz beobachteten. Jent & Reinert, Bern, 228 pp.
- Pruesse, E., Peplies, J. & Glöckner, F.O. (2012) SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28: 1823–1829. https://doi.org/10.1093/bioinformatics/bts252
- Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574. https://doi.org/10.1093/bioinformatics/btg180
- Saha, L.C. & Wujek, D.E. (1990) Scale-bearing Chrysophytes from Tropical Northeast India. Nordic Journal of Botany 10: 343–355. https://doi.org/10.1111/j.1756-1051.1990.tb01777.x
- Schmidt-Thomé, P., Nguyen, H., Pham, L., Jarva, J. & Nuottimäki, K. (2015) Climate change adaptation measures in Vietnam. Springer International Publishing, Cham, Switzerland, pp. 79–91. https://doi.org/10.1007/978-3-319-12346-2
- Siver, P.A. (1991) The Biology of Mallomonas: Morphology, Taxonomy and Ecology. Kluwer Academic, Dordrecht, Netherlands, 228 pp. https://doi.org/10.1007/978-94-011-3376-0
- Siver, P.A. (2024) Mallomonas gigantica sp. nov., an Eocene synurophyte possessing the largest known siliceous scales. Fottea 24 (2): 261–268. https://doi.org/10.5507/fot.2024.006
- Siver, P.A., Jo, B.Y., Kim, J.I., Shin, W., Lott, A.M. & Wolfe, A.P. (2015) Assessing the evolutionary history of the class Synurophyceae (Heterokonta) using molecular, morphometric, and paleobiological approaches. American Journal of Botany 102: 921–941. https://doi.org/10.3732/ajb.1500004
- Škaloud, P., Kynčlová, A., Benada, O., Kofroňová, O. & Škaloudová, M. (2012) Toward a revision of the genus Synura, section Petersenianae (Synurophyceae, Heterokontophyta): morphological characterization of six pseudo-cryptic species. Phycologia 51 (3): 303–329. https://doi.org/10.2216/11-20.1
- Škaloud, P., Kristiansen, J. & Škaloudová, M. (2013) Developments in the taxonomy of silica-scaled chrysophytes—from morphological and ultrastructural to molecular approaches. Nordic Journal of Botany 31: 385–402. https://doi.org/10.1111/j.1756-1051.2013.00119.x
- Takahashi, K. (1972) Studies on genera Mallomonas and Synura, and other plankton in freshwater with the electron microscope. VIII. On three new species of Chrysophyceae. Botanical Magazine 85: 293–302. https://doi.org/10.1007/BF02490175
- Tran, H.Q. & Mazei, Y.A. (2018) Testate amoebae from South Vietnam waterbodies with the description of new species Difflugia vietnamica sp. nov. Acta Protozoologica 57: 215–230. https://doi.org/10.4467/16890027AP.18.016.10092
- Tran, H.Q., Tran, V.T., Zagumyonnaya, O.N. & Tikhonenkov, D.V. (2022) Ecology of testate amoebae in waterbodies of the Central Highlands and South-Central Coast provinces of Vietnam with the description of new species Difflugia quangtrani sp. nov. European Journal of Protistology 86: 125933. https://doi.org/10.1016/j.ejop.2022.125933
- Wee, J.L., Fasone, L.D., Sattler, A., Starks, W.W. & Hurley, D.L. (2001) ITS/5.8S DNA sequence variation in 15 isolates of Synura petersenii Korshikov (Synurophyceae). Nova Hedwigia Beiheft 122: 245–258.
- Wei, Y.X. & Yuan, X.P. (2001) Studies on silica-scaled chrysophytes from the tropics and subtropics of China. Nova Hedwigia 122: 169–187.
- Wei, Y.X., Yuan, X.P. & Kristiansen, J. (2014) Silica-Scaled Chrysophytes from Hainan, Guangdong Provinces and Hong Kong Special Administrative Region, China. Nordic Journal of Botany 32: 881–896. https://doi.org/10.1111/njb.00493
