Abstract
Fungal taxa can be found almost anywhere and China is recognized as one of the most diverse regions globally. Within Asia, China leads major fungal hotspot studies, with Yunnan Province noted for its high plant and fungal diversity compared to other regions in the country. The Kunming Institute of Botany (KIB), Chinese Academy of Sciences (CAS), is a leading research institute with a botanical garden focused on the taxonomy and phylogeny of plants, fungi, lichen, and related projects. This study introduces new and known taxa from KIB collections based on comprehensive morphological and molecular analyses. Detailed morphological descriptions, illustrations and multigene phylogenetic analyses were used to identify four taxa within the class Dothideomycetes (Pleosporales). This includes a new genus (Paracrassiperidium), a new species (P. fusiforme), and two previously known species (Chaetopyrena penicillata and Pseudokeissleriella bambusicola). The new genus is characterized by dome-shaped, semi-immersed to immersed ascomata with a thick-walled peridium, a hamathecium composed of branched pseudoparaphyses, cylindrical to cylindric-clavate pedicellate asci with a well-developed ocular chamber, and fusiform, hyaline to light brown, septate ascospores.
References
- Adamčík, S., Cai, L., Chakraborty, D., Chen, X.-H., Cotter, H.V.T., Dai, D.-Q., Dai, Y.-C., Das, K., Deng, C. & Ghobad-Nejhad, M. (2015) Fungal biodiversity profiles 1–10. Cryptogamie, Mycologie 36: 121–166. https://doi.org/10.7872/crym/v36.iss2.2015.121
- Ariyawansa, H., Phillips, A., Chuang, W. & Tsai, I. (2018) Tzeananiaceae, a new pleosporalean family associated with Ophiocordyceps macroacicularis fruiting bodies in Taiwan. MycoKeys 37: 1–17. https://doi.org/10.3897/mycokeys.37.27265
- Arzanlou, M. & Khodaei, S. (2012) Phenotypic and molecular characterization of Chaetopyrena penicillata from Iran with description of a hyphomycete synanomorph. Mycosphere 3: 73–77. https://doi.org/10.5943/mycosphere/3/1/9
- Aveskamp, M.M., Verkley, G., Gruyter, J., Murace, M., Perelló, A., Woudenberg, J.H.C., Groenewald, J.Z. & Crous, P. (2009) DNA phylogeny reveals polyphyly of Phoma section Peyronellaea and multiple taxonomic novelties. Mycologia 101: 363–82. https://doi.org/10.3852/08-199
- Aveskamp, M.M., De Gruyter, J., Woudenberg, J.H.C., Verkley, G.J.M. & Crous, P.W. (2010) Highlights of the Didymellaceae: A polyphasic approach to characterise Phoma and related pleosporalean genera. Studies in Mycology 65: 1–60. https://doi.org/10.3114/sim.2010.65.01
- Bose, S.K. (1961) Studies on Massarina Sacc. and related genera. Phytopathologische Zeitschrift 41 (2): 151–213. https://doi.org/10.1111/j.1439-0434.1961.tb04048.x
- Cai, L., Jeewon, R. & Hyde, K.D. (2006) Molecular systematics of Zopfiella and allied genera: evidence from multigene sequence analyses. Mycological Research 110: 359–368. https://doi.org/10.1016/j.mycres.2006.01.007
- Calabon, M.S., Jones, E.G., Hyde, K.D., Boonmee, S., Tibell, S., Tibell, L., Pang, K.L. & Phookamsak, R. (2021) Phylogenetic assessment and taxonomic revision of Halobyssothecium and Lentithecium (Lentitheciaceae, Pleosporales). Mycological Progress 20 (5): 701–720. https://doi.org/10.1007/s11557-021-01692-x
- Carbone, I. & Kohn, L.M. (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91 (3): 553–556. https://doi.org/10.2307/3761358.
- Cheek, M., Nic, L.E, Kirk, P., Lindon, H., Carretero, J., Looney, B., Douglas, B., Haelewaters, D., Gaya, E., Llewellyn, T., Ainsworth, A.M., Gafforov, Y., Hyde, K., Crous, P., Hughes, M., Walker, B.E., Forzza, R.C., Wong, K.M. & Niskanen, T. (2020) New scientific discoveries: Plants and fungi. Plants, People, Planet 2: 371–388. https://doi.org/10.1002/ppp3.10148
- Chen, Q., Jiang, J.R., Zhang, G.Z., Cai, L. & Crous, P.W. (2015a) Resolving the Phoma enigma. Studies in Mycology 82: 137–217. https://doi.org/10.1016/j.simyco.2015.10.003
- Chen, Q., Zhang, K.E., Zhang, G. & Cai, L. (2015b) A polyphasic approach to characterise two novel species of Phoma (Didymellaceae) from China. Phytotaxa 197: 267–281. https://doi.org/10.11646/phytotaxa.197.4.4
- Crous, P.W., Gams, W., Stalpers, J.A., Robert, V. & Stegehuis, G. (2004) MycoBank: an online initiative to launch mycology into the 21st century. Studies in mycology 50 (1): 19–22.
- Crous, P.W., Giraldo, A., Hawksworth, D.L., Robert, V., Kirk, P.M., Guarro, J., Robbertse, B., Schoch, C.L., Damm, U., Trakunyingcharoen, T. & Groenewald, J.Z. (2014) The genera of fungi: fixing the application of type species of generic names. IMA Fungus 5: 141–160. https://doi.org/10.5598/imafungus.2015.06.01.11
- Crous, P.W., Wingfield, M.J., Guarro, J., Hernández-Restrepo, M., Sutton, D.A., Acharya, K., Barber, P.A., Boekhout, T., Dimitrov, R.A., Dueñas, M., Dutta, A.K., Gené, J., Gouliamova, D.E., Groenewald, M., Lombard, L., Morozova, O.V., Sarkar, J., Smith, M.TH., Stchigel, A.M., Wiederhold, N.P., Alexandrova, A.V., Antelmi, I., Armengol, J., Barnes, I., Cano-Lira, J.F., Ruiz, R.F. Castañeda, Contu, M., Courtecuisse, Pr.R., da Silveira, A.L., Decock, C.A., de Goes, A., Edathodu, J., Ercole, E., Firmino, A.C., Fourie, A., Fournier, J., Furtado, E.L., Geering, A.D.W., Gershenzon, J., Giraldo, A., Gramaje, D., Hammerbacher, A., He, X.-L., Haryadi, D., Khemmuk, W., Kovalenko, A.E., Krawczynski, R., Laich, F., Lechat, C., Lopes, U.P., Madrid, H., Malysheva, E.F., Marín-Felix, Y., Martín, M.P., Mostert, L., Nigro, F., Pereira, O.L., Picillo, B., Pinho, D.B., Popov, E.S., Peláez, C.A. Rodas, Rooney-Latham, S., Sandoval-Denis, M., Shivas, R.G., Silva, V., Stoilova-Disheva, M.M., Telleria, M.T., Ullah, C., Unsicker, S.B., van der Merwe, N.A., Vizzini, A., Wagner, H.-G., Wong, P.T.W., Wood, A.R. & Groenewald, J.Z. (2015) Fungal planet description sheets: 320–370. Persoonia-Molecular Phylogeny and Evolution of Fungi 34 (1): 167–266. https://doi.org/10.3767/003158515X688433
- Dai, D.Q., Bhat, D.J., Liu, J., Chukeatirote, E., Zhao, R. & Hyde, K.D. (2012) Bambusicola, a new genus from bamboo with asexual and sexual morphs. Cryptogamie, Mycologie 33: 363–379. https://doi.org/10.7872/crym.v33.iss3.2012.363
- Dayarathne, M.C., Wanasinghe, D.N., Jones, E.B.G., Chomnunti, P. & Hyde, K.D. (2018) A novel marine genus, Halobyssothecium (Lentitheciaceae) and epitypification of Halobyssothecium obiones comb. nov. Mycological Progress 17: 1161–1171. https://doi.org/10.1007/s11557-018-1432-3
- De Gruyter, J., Aveskamp, M.M., Woudenberg, J.H.C., Verkley, G.J.M., Groenewald, J.Z. & Crous, P.W. (2009) Molecular phylogeny of Phoma and allied anamorph genera: Towards a reclassification of the Phoma complex. Mycological Research 113: 508–519. https://doi.org/10.1016/j.mycres.2009.01.002
- De Gruyter, J., Woudenberg, J.H.C., Aveskamp, M.M., Verkley, G.J.M., Groenewald, J.Z. & Crous, P.W. (2010) Systematic reappraisal of species in Phoma section Paraphoma, Pyrenochaeta and Pleurophoma. Mycologia 102: 1066–1081. https://doi.org/10.3852/09-240
- Du, T.Y., Karunarathna, S.C., Zhang, X., Dai, D.Q., Mapook, A., Suwannarach, N., Xu, J.C., Stephenson, S.L., Elgorban, A.M., Al-Rejaie, S. & Tibpromma, S. (2022) Endophytic fungi associated with Aquilaria sinensis (Agarwood) from China show antagonism against bacterial and fungal pathogens. Journal of Fungi 8 (11): 1197. https://doi.org/10.3390/jof8111197
- Gruyter, J.D., Woudenberg, J.H.C., Aveskamp, M.M., Verkley, G.J.M., Groenewald, J.Z. & Crous, P.W. (2010) Systematic reappraisal of species in Phoma section Paraphoma, Pyrenochaeta, and Pleurophoma. Mycologia 102: 1066–1081. https://doi.org/10.3852/09-240
- Figueras, M.J. & Guarro, J. (1988) A scanning electron microscopic study of ascoma development in Chaetomium malaysiense. Mycologia 80: 298–306. https://doi.org/10.1080/00275514.1988.12025542
- Gherbawy, Y. & Voigt, K. (2010) Molecular identification of fungi. Springer, Berlin, 507pp. https://doi.org/10.1007/978-3-642-05042-8
- Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98. https://doi.org/10.4236/sgre.2015.64007
- Hashimoto, A., Matsumura, M., Hirayama, K., Fujimoto, R. & Tanaka, K. (2017) Pseudodidymellaceae fam. nov.: Phylogenetic affiliations of mycopappus-like genera in Dothideomycetes. Studies in Mycology 87: 187–206. https://doi.org/10.1016/j.simyco.2017.07.002
- Hirayama, K., Tanaka, K., Raja, H.A., Miller, A.N. & Shearer, C.A. (2010) A molecular phylogenetic assessment of Massarina ingoldiana sensu lato. Mycologia 102 (3): 729–746. https://doi.org/10.3852/09-230
- Hongsanan, S., Maharachchikumbura, S.S.N., Hyde, K.D. & Samarakoon, M.C. (2017) An updated phylogeny of Sordariomycetes based on phylogenetic and molecular clock evidence. Fungal diversity 84: 25–41. https://doi.org/10.1007/s13225-017-0384-2
- Hongsanan, S., Hyde, K.D., Phookamsak, R., Wanasinghe, D.N., McKenzie, E.H.C., Sarma, V.V., Boonmee, S., Lücking, R., Bhat, D.J., Liu, N.G., Tennakoon, D.S., Pem, D., Karunarathna, A., Jiang, S.H., Jones, E.B.G., Phillips, A.J.L., Manawasinghe, I.S., Tibpromma, S., Jayasiri, S.H., Jeewon, R., Lu, Y.Z., Dissanayake, A.J., Zeng, X.Y., Luo, Z.L., Tian, Q., Phukhamsakda, C., Thambugala, K.M., Dai, D.Q., Chethana, K.W.T., Samarakoon, M.C., Ertz, D., Bao, D.F., Doilom, M., Liu, J.K., Pérez-Ortega, S., Suija, A., Senwanna, C., Wijesinghe, S.N., Konta, S., Niranjan, M., Zhang, S.N., Ariyawansa, H.A., Jiang, H.B., Zhang, J.F., Norphanphoun, C., de Silva, N.I., Thiyagaraja, V., Zhang, H., Bezerra, J.D.P., Miranda-González, R., Aptroot, A., Kashiwadani, H., Harishchandra, D., Sérusiaux, E., Aluthmuhandiram, J.V.S., Abeywickrama, P.D., Devadatha, B., Wu, H.X., Moon, K.H., Gueidan, C., Schumm, F., Bundhun, D., Mapook, A., Monkai, J., Chomnunti, P., Suetrong, S., Chaiwan, N., Dayarathne, M.C., Yang, J., Rathnayaka, A.R., Bhunjun, C.S., Xu, J.C., Zheng, J.S., Liu, G., Feng, Y. & Xie, N. (2020) Refined families of Dothideomycetes: Dothideomycetidae and Pleosporomycetidae. Mycosphere 11: 1553–2107. https://doi.org/10.5943/mycosphere/11/1/13
- Hou, L.W., Groenewald, J.Z., Pfenning, L.H., Yarden, O., Crous, P.W. & Cai, L. (2020) The phoma-like dilemma. Studies in Mycology 96: 309–396. https://doi.org/10.1016/j.simyco.2020.05.001
- Hyde, K.D., Baldrian, P., Chen, Y., Chethana, K.W.T., Hoog, S.D., Doilom, M., Gomes de Farias, A.T., Gonçalves, M.F.M., Gonkhom, D., Gui, H., Hilário, S., Hu, Y., Jayawardena, R.S., Khyaju, S., Kirk, P.M., Kohout, P., Luangharn, T., Maharachchikumbura, S.S.N., Manawasinghe, I.S., Mortimer, P.E., Niego, A.G.T., Phonemany, M., Sandargo, B., Senanayake, I.C., Stadler, M., Surup, F., Thongklang, N., Wanasinghe, D.N., Bahkali, A.H. & Walker, A. (2024) Current trends limitations and future research in the fungi? Fungal Diversity 125 (1): 1–71. https://doi.org/10.1007/s13225-023-00532-5
- Hyde, K.D., Chaiwan, N., Norphanphoun, C., Boonmee, S., Camporesi, E., Chethana, K.W.T., Dayarathne, M.C., de Silva, N.I., Dissanayake, A.J., Ekanayaka, A.H., Hongsanan, S., Huang, S.K., Jayasiri, S.C., Jayawardena, R.S., Jiang, H.B., Karunarathna, A., Lin, C.G., Liu, J.K., Liu, N.G., Lu, Y.Z., Luo, Z.L., Maharachchimbura, S.S.N., Manawasinghe, I.S., Pem, D., Perera, R.H., Phukhamsakda, C., Samarakoon, M.C., Senwanna, C., Shang, Q.J., Tennakoon, D.S., Thambugala, K.M., Tibpromma, S., Wanasinghe, D.N., Xiao, Y.P., Yang, J., Zeng, X.Y., Zhang, J.F., Zhang, S.N., Bulgakov, T.S., Bhat, D.J., Cheewangkoon, R., Goh, T.K., Jones, E.B.G., Kang, J.C., Jeewon, R., Liu, Z.Y., Lumyong, S., Kuo, C.H., McKenzie, E.H.C., Wen, T.C., Yan, J.Y. & Zhao, Q. (2018) Mycosphere notes 169–224. Mycosphere 9 (2): 271–430. https://doi.org/10.5943/mycosphere/9/2/8
- Hyde, K.D., Dong, Y., Phookamsak, R., Jeewon, R., Bhat, D.J., Jones, E.B.G., Liu, N.G., Abeywickrama, P.D., Mapook, A., Wei, D., Perera, R.H., Manawasinghe, I.S., Pem, D., Bundhun, D., Karunarathna, A., Ekanayaka, A.H., Bao, D.F., Li, J., Samarakoon, M.C., Chaiwan, N., Lin, C.G., Phutthacharoen, K., Zhang, S.N., Senanayake, I.C., Goonasekara, I.D., Thambugala, K.M., Phukhamsakda, C., Tennakoon, D.S., Jiang, H.B., Yang, J., Zeng, M., Huanraluek, N., Liu, J.K., Wijesinghe, S.N.W., Tian, Q., Tibpromma, S., Brahmanage, R.S., Boonmee, S., Huang, S.K., Thiyagaraja, V., Lu, Y.Z., Jayawardena, R.S.J., Dong, W., Yang, E.F., Singh, S.K., Singh, S.M., Rana, S., Lad, S.S., Anand, G., Devadatha, B., Niranjan, M., Sarma, V.V., Liimatainen, K., Aguirre-Hudson, B., Niskanen, T., Overall, A., Alvarenga, R.L.M., Gibertoni, T.B., Pfliegler, W.P., Horváth, E., Imre, A., Alves, A.L., Santos, A.C.d.S., Tiago, P.V., Bulgakov, T.S., Wanasinghe, D.N., Bahkali, A.H., Doilom, M., Elgorban, A.M., Maharachchikumbura, S.S.N., Rajeshkumar, K.C., Haelewaters, D., Mortimer, P.E., Zhao, Q., Lumyong, S., Xu & Sheng, J. (2020) Fungal diversity notes 1151–1276: taxonomic and phylogenetic contributions on genera and species of fungal taxa. Fungal diversity 100: 5–277. https://doi.org/10.1007/s13225-020-00439-5
- Hyde, K.D., Jones, E.B.G., Liu, J.K., Ariyawansa, H., Boehm, E., Boonmee, S., Braun, U., Chomnunti, P., Crous, P.W., Dai, D.Q., Diederich, P., Dissanayake, A., Doilom, M., Doveri, F., Hongsanan, S., Jayawardena, R., Lawrey, J.D., Li, Y.M., Liu, Y.X., Lücking, R., Monkai, J., Muggia, L., Nelsen, M.P., Pang, K.L., Phookamsak, R., Senanayake, I.C., Shearer, C.A., Suetrong, S., Tanaka, K., Thambugala, K.M., Wijayawardene, N.N., Wikee, S., Wu, H.X., Zhang, Y., Aguirre-Hudson, B., Alias, S.A., Aptroot, A., Bahkali, A.H., Bezerra, J.L., Bhat, D.J., Camporesi, E., Chukeatirote, E., Gueidan, C., Hawksworth, D.L., Hirayama, K., De Hoog, S., Kang, J.C., Knudsen, K., Li, W.J., Li, X.H., Liu, Z.Y., Mapook, A., McKenzie, E.H.C., Miller, A.N., Mortimer, P.E., Phillips, A.J.L., Raja, H.A., Scheuer, C., Schumm, F., Taylor, J.E., Tian, Q., Tibpromma, S., Wanasinghe, D.N., Wang, Y., Xu, J.C., Yacharoen, S., Yan, J.Y. & Zhang, M. (2013) Families of Dothideomycetes. Fungal diversity 63: 1–313. https://doi.org/10.1007/s13225-013-0263-4
- Hyde, K.D., Tennakoon, D.S., Jeewon, R., Bhat, D.J., Maharachchikumbura, S.S.N., Rossi, W., Leonardi, M., Lee, H.B., Mun, H.Y., Houbraken, J., Nguyen, T.T., Jeon, S.J., Frisvad, J.C., Wanasinghe, D.N., Lücking, R., Aptroot, A., Cáceres, M.E.S., Karunarathna, S.C., Hongsanan, S., Phookamsak, R., de Silva, N.I., Thambugala, K.M., Jayawardena, R.S., Senanayake, I.C., Boonmee, S., Chen, J., Luo, Z.L., Phukhamsakda, C., Pereira, O.L., Abreu, V.P., Rosado, A.W.C., Bart, B., Randrianjohany, E., Hofstetter, V., Gibertoni, T.B., Soares, A.M.d.S., Plautz Jr., H.L.P., Sotão, H.M.P.S., Xavier, W.K.S., Bezerra, J.D.P., de Oliveira, T.G.L., de Souza-Motta, C.M., Magalhães, O.M.C., Bundhun, D., Harishchandra, D., Manawasinghe, I.S., Dong, W., Zhang, S.N., Bao, D.F., Samarakoon, M.C., Pem, D., Karunarathna, A., Lin, C.G., Yang, J., Perera, R.H., Kumar, V., Huang, S.K., Dayarathne, M.C., Ekanayaka, A.H., Jayasiri, S.C., Xiao, Y., Konta, S., Niskanen, T., Liimatainen, K., Dai, Y.C., Ji, X.H., Tian, X.M., Mešić, A., Singh, S.K., Phutthacharoen, K., Cai, L., Sorvongxay, T., Thiyagaraja, V., Norphanphoun, C., Chaiwan, N., Lu, Y.Z., Jiang, H.B., Zhang, J.F., Abeywickrama, P.D.A., Aluthmuhandiram, J.V.S., Brahmanage, R.S., Zeng, M., Chethana, T., Wei, D., Réblová, M., Fournier, J., Nekvindová, J., Barbosa, R.d.N., dos Santos, J.E.F., de Oliveira, N.T., Li, G.J., Ertz, D., Shang, Q.J., Phillips, A.J.L., Kuo, C.H., Camporesi, E., Bulgakov, T.S., Lumyong, S., Chomnunti, P., Gentekaki, E., Bungartz, F., Zeng, X.Y., Fryar, S., Tkalčec, Z., Liang, J.M., Li, G.S., Wen, T.C., Singh, P.N., Gafforov, Y., Promputtha, I., Yasanthika, E., Goonasekara, I.D., Zhao, R.L., Kirk, P.M., Liu, J.K., Yan, J.Y., Mortimer, P.E., Xu, J. & Doilom, M. (2019) Fungal diversity notes 1036–1150: taxonomic and phylogenetic contributions on genera and species of fungal taxa. Fungal diversity 96: 1–242. https://doi.org/10.1007/s13225-019-00429-2
- Hyde, K.D., Noorabadi, M.T., Thiyagaraja, V., He, M.Q., Johnston, P.R., Wijesinghe, S.N., Armand, A., Biketova, A.Y., Chethana, K.W.T., Erdoğdu, M., Ge, Z.W., Groenewald, J.Z., Hongsanan, S., Kušan, I., Leontyev, D.V., Li, D.W., Lin, C.G., Liu, N.G., Maharachchikumbura, S.S.N., Matočec, N., May, T.W., McKenzie, E.H.C., Mešić, A., Perera, R.H., Phukhamsakda, C., Piątek, M., Samarakoon, M.C., Selcuk, F., Senanayake, I.C., Tanney, J.B., Tian, Q., Vizzini, A., Wanasinghe, D.N., Wannasawang, N., Wijayawardene, N.N., Zhao, R.L., Abdel-Wahab, M.A., Abdollahzadeh, J., Abeywickrama, P.D., Abhinav, Absalan, S., Acharya, K., Afshari, N., Afshan, N.S., Afzalinia, S., Ahmadpour, S.A., Akulov, O., Alizadeh, A., Alizadeh, M., Al-Sadi, A.M., Alves, A., Alves, V.C.S., Alves-Silva, G., Antonín, V., Aouali, S., Aptroot, A., Apurillo, C.C.S., Arias, R.M., Asgari, B., Asghari, R., Assis, D.M.A., Assyov, B., Atienza, V., Aumentado, H.D.R., Avasthi, S., Azevedo, E., Bakhshi, M., Bao, D.F., Baral, H.O., Barata, M., Barbosa, K.D., Barbosa, R.N., Barbosa, F.R., Baroncelli, R., Barreto, G.G., Baschien, C., Bennett, R.M., Bera, I., Bezerra, J.D.P., Bhunjun, C.S., Bianchinotti, M.V., Błaszkowski, J., Boekhout, T., Bonito, G.M., Boonmee, S., Boonyuen, N., Bortnikov, F.M., Bregant, C., Bundhun, D., Burgaud, G., Buyck, B., Caeiro, M.F., Cabarroi-Hernández, M., Cai M, Feng., Cai, L., Calabon, M.S., Calaça, F.J.S., Callalli, M., Câmara, M.P.S., Cano-Lira, J., Cao, B., Carlavilla, J.R., Carvalho, A., Carvalho, T.G., Castañeda-Ruiz, R.F., Catania, M.D.V., Cazabonne, J., Cedeño-Sanchez, M., Chaharmiri-Dokhaharani, S., Chaiwan, N., Chakraborty, N., Cheewankoon, R., Chen, C., Chen, J., Chen, Q., Chen, Y.P., Chinaglia, S., Coelho-Nascimento, C.C., Coleine, C., Costa- Rezende, D.H., Cortés-Pérez, A., Crouch, J.A., Crous, P.W., Cruz, R.H.S.F., Czachura, P., Damm, U., Darmostuk, V., Daroodi, Z., Das, K., Das, K., Davoodian, N., Davydov, E.A., da Silva, G.A., da Silva, I.R., da Silva, R.M.F., da Silva Santos, A.C., Dai, D.Q., Dai, Y.C., de Groot Michiel, D., De Kesel, A., De Lange, R., de Medeiros, E.V., de Souza, C.F.A., de Souza, F.A., dela Cruz, T.E.E., Decock, C., Delgado, G., Denchev, C.M., Denchev, T.T., Deng, Y.L., Dentinger, B.T.M., Devadatha, B., Dianese, J.C., Dima, B., Doilom, M., Dissanayake, A.J., Dissanayake, D.M.L.S., Dissanayake, L.S., Diniz, A.G., Dolatabadi, S., Dong, J.H., Dong, W., Dong, Z.Y., Drechsler-Santos, E.R., Druzhinina, I.S., Du, T.Y., Dubey, M.K., Dutta, A.K., Elliott, T.F., Elshahed, M.S., Egidi, E., Eisvand, P., Fan, L., Fan, X., Fan, X.L., Fedosova, A.G., Ferro, L.O., Fiuza, P.O., Flakus, A., W. Fonseca, E.O., Fryar, S.C., Gabaldón, T., Gajanayake, A.J., Gannibal, P.B., Gao, F., García- Sánchez, D., García-Sandoval, R., Garrido-Benavent, I., Garzoli, L., Gasca-Pineda, J., Gautam, A.K., Gené, J., Ghobad-Nejhad, M., Ghosh, A., Giachini, A.J., Gibertoni, T.B., Gentekaki, E., Gmoshinskiy, V.I., Góes- Neto, A., Gomdola, D., Gorjón, S.P., Goto, B.T., Granados-Montero, M.M., Griffith, G.W., Groenewald, M., Grossart, H-P., Gu, Z.R., Gueidan, C., Gunarathne, A., Gunaseelan, S., Guo, S.L., Gusmão, L.F.P., Gutierrez, A.C., Guzmán-Dávalos, L., Haelewaters, D., Haituk, H., Halling, R.E., He, S.C., Heredia, G., Hernández-Restrepo, M., Hosoya, T., Hoog, S.D., Horak, E., Hou, C.L., Houbraken, J., Htet, Z.H., Huang, S.K., Huang, W.J., Hurdeal, V.G., Hustad, V.P., Inácio, C.A., Janik, P., Jayalal, R.G.U., Jayasiri, S.C., Jayawardena, R.S., Jeewon, R., Jerônimo, G.H., Jin, J., Jones, E.B.G., Joshi, Y., Jurjević, Ž., Justo, A., Kakishima, M., Kaliyaperumal, M., Kang, G.P., Kang, J.C., Karimi, O., Karunarathna, S.C., Karpov, S.A., Kezo, K., Khalid, A.N., Khan, M.K., Khuna, S., Khyaju, S., Kirchmair, M., Klawonn, I., Kraisitudomsook, N., Kukwa, M., Kularathnage, N.D., Kumar, S., Lachance, M.A., Lado, C., Latha, K.P.D., Lee, H.B., Leonardi, M., Lestari, A.S., Li, C., Li, H., Li, J., Li, Q., Li, Y., Li, Y.C., Li, Y.X., Liao, C.F., Lima, J.L.R., Lima, J.M.S., Lima, N.B., Lin, L., Linaldeddu, B.T., Linn, M.M., Liu, F., Liu, J.K., Liu, J.W., Liu, S., Liu, S.L., Liu, X.F., Liu, X.Y., Longcore, J.E., Luangharn, T., Luangsa-ard, J.J., Lu, L., Lu, Y.Z., Lumbsch, H.T., Luo, L., Luo, M., Luo, Z.L., Ma, J., Madagammana, A.D., Madhushan, A., Madrid, H., Magurno, F., Magyar, D., Mahadevakumar, S., Malosso, E., Malysh, J.M., Mamarabadi, M., Manawasinghe, I.S., Manfrino, R.G., Manimohan, P., Mao, N., Mapook, A., Marchese, P., Marasinghe, D.S., Mardones, M., Marin-Felix, Y., Masigol, H., Mehrabi, M., Mehrabi-Koushki, M., Meiras-Ottoni, A. de., Melo, R.F.R., Mendes-Alvarenga, R.L., Mendieta, S., Meng, Q.F., Menkis, A., Menolli, Jr.N., Mikšík, M., Miller, S.L., Moncada, B., Moncalvo, J.M., Monteiro, J.S., Monteiro, M., Mora-Montes, H.M., Moroz, E.L., Moura, J.C., Muhammad, U., Mukhopadhyay, S., Nagy, G.L., Najam ul. Sehar, A., Najafiniya, M., Nanayakkara, C.M., Naseer, A., Nascimento, E.C.R., Nascimento, S.S., Neuhauser, S., Neves, M.A., Niazi, A.R., Nie, Yong., Nilsson, R.H., Nogueira, P.T.S., Novozhilov, Y.K., Noordeloos, M., Norphanphoun, C., Nuñez Otaño, N., O’Donnell, R.P., Oehl, F., Oliveira, J.A., Oliveira, Junior, I., Oliveira, N.V.L., Oliveira, P.H.F., Orihara, T., Oset, M., Pang, K.L., Papp, V., Pathirana, L.S., Peintner, U., Pem, D., Pereira, O.L., Pérez-Moreno, J., Pérez-Ortega, S., Péter, G., Pires-Zottarelli, C.L.A., Phonemany, M., Phongeun, S., Pošta, A., Prazeres, J.F.S.A., Quan, Y., Quandt, C.A., Queiroz, M.B., Radek, R., Rahnama, K., Raj, K.N.A., Rajeshkumar, K.C., Rajwar, Soumyadeep., Ralaiveloarisoa, A.B., Rämä, T., Ramírez-Cruz, V., Rambold, G., Rathnayaka, A.R., Raza, M., Ren, G.C., Rinaldi, A.C., Rivas-Ferreiro, M., Robledo, G.L., Ronikier, A., Rossi, W., Rusevska, K., Ryberg, M., Safi, A., Salimi, F., Salvador-Montoya, C.A., Samant, B., Samaradiwakara, N.P., Sánchez-Castro, I., Sandoval-Denis, M., Santiago, A.L.C.M.A., Santos, A.C.D.S., Santos, L.A. dos., Sarma, V.V., Sarwar, S., Savchenko, A., Savchenko, K., Saxena, R.K., Schoutteten, N., Selbmann, L., Ševčíková, H., Sharma, A., Shen, H.W., Shen, Y.M., Shu, Y.X., Silva, H.F., Silva-Filho, A.G.S., Silva, V.S.H., Simmons, D.R., Singh, R., Sir, E.B., Sohrabi, M., Souza, F.A., Souza-Motta, C.M., Sri-indrasutdhi, V., Sruthi, O.P., Stadler, M., Stemler, J., Stephenson, S.L., Stoyneva-Gaertner, M.P., Strassert, J.F.H., Stryjak-Bogacka, M., Su, H., Sun, Y.R., Svantesson, S., Sysouphanthong, P., Takamatsu, S., Tan, T.H., Tanaka, K., Tang, C., Tang, X., Taylor, J.E., Taylor, P.W.J., Tennakoon, D.S., Thakshila, S.A.D., Thambugala, K.M., Thamodini, G.K., Thilanga, D., Thines, M., Tiago, P.V., Tian, X.G., Tian, W.H., Tibpromma, S., Tkalčec, Z., Tokarev, Y,S., Tomšovský, M., Torruella, G., Tsurykau, A., Udayanga, D., Ulukapı, M., Untereiner, W.A., Usman, M., Uzunov, B.A., Vadthanarat, S., Valenzuela, R., Van den Wyngaert, S., Van Vooren, N., Velez, P., Verma, R.K., Vieira, L.C., Vieira, W.A.S., Vinzelj, J.M., Tang, A.M.C., Walker, A., Walker, A.K., Wang, Q.M., Wang, Y., Wang, X.Y., Wang, Z.Y., Wannathes, N., Wartchow, F., Weerakoon, G., Wei, D.P., Wei, X., White, J.F., Wijesundara, D.S.A., Wisitrassameewong, K., Worobiec, G., Wu, H.X., Wu, N., Xiong, Y.R., Xu, B., Xu, J.P., Xu, R., Xu, R.F., Xu, R.J., Yadav, S., Yakovchenko, L.S., Yang, H.D., Yang, X., Yang, Y.H., Yang, Y., Yang, Y.Y., Yoshioka, R., Youssef Noha, H., Yu, F.M., Yu, Z.F., Yuan, L.L., Yuan, Q., Zabin, D.A., Zamora, J.C., Zapata, C.V., Zare, R., Zeng, M., Zeng, X.Y., Zhang, J.F., Zhang, J.Y., Zhang, S., Zhang, X.C., Zhao, C.L., Zhao, H., Zhao, Q., Zhao, H., Zhao, H.J., Zhou, H.M., Zhu, X.Y., Zmitrovich, I.V., Zucconi, L. & Zvyagina, E. (2024) The 2024 Outline of fungi and fungus-like taxa. Mycosphere 15 (1): 5146– 6239. https://doi.org/10.5943/mycosphere/15/1/25
- Index Fungorum (2024) Available from: http://www.indexfungorum org/Names/Names asp (Accessed September 2024).
- Jaklitsch, W.M. & Voglmayr, H. (2016) Hidden diversity in Thyridaria and a new circumscription of the Thyridariaceae. Studies in Mycology 85: 35–64. https://doi.org/10.1016/j.simyco.2016.09.002
- Jaklitsch, W.M., Checa, J., Blanco, M.N., Olariaga, I., Tello, S. & Voglmayr, H. (2018) A preliminary account of the Cucurbitariaceae. Studies in Mycology 90: 71–118. https://doi.org/10.1016/j.simyco.2017.11.002
- Jayawardena, R.S., Hyde, K.D., Jeewon, R., Ghobad-Nejhad, M., Wanasinghe, D.N., Liu, N.G., Phillips, A.J.L., Oliveira-Filho, J.R.C., da Silva, G.A., Gibertoni, T.B., Abeywikrama, P., Carris, L.M., Chethana, K.W.T., Dissanayake, A.J., Hongsanan, S., Jayasiri, S.C., McTaggart, A.R., Perera, R.H., Phutthacharoen, K., Savchenko, K.G., Shivas, R.G., Thongklang, N., Dong, W., Wei, D.P., Wijayawardena, N.N. & Kang, J.C. (2019) One stop shop II: taxonomic update with molecular phylogeny for important phytopathogenic genera: 26–50. Fungal Diversity 94: 41–129. https://doi.org/10.1007/s13225-019-00418-5
- Jeewon, R. & Hyde, K.D. (2016) Establishing species boundaries and new taxa among fungi: recommendations to resolve taxonomic ambiguities. Mycosphere 7 (11): 1669–1677. https://doi.org/10.5943/mycosphere/7/11/4
- Jeewon, R., Liew, E.C.Y. & Hyde, K.D. (2002) Phylogenetic relationships of Pestalotiopsis and allied genera inferred from ribosomal DNA sequences and morphological characters. Molecular phylogenetics and evolution 25 (3): 378–392. https://doi.org/10.1016/s1055-7903(02)00422-0
- Jeewon, R., Liew, E.C.Y., Simpson, J.A., Hodgkiss, I.J. & Hyde, K.D. (2003) Phylogenetic significance of morphological characters in the taxonomy of Pestalotiopsis species. Molecular phylogenetics and evolution 27: 372–383. https://doi.org/10.1016/S1055-7903(03)00010-1
- Kaewchai, S., Soytong, K. & Hyde, K.D. (2009) Mycofungicides and fungal biofertilizers. Fungal Diversity 38: 25–50.
- Knapp, D.G., Kovács, G.M., Zajta, E., Groenewald, J.Z. & Crous, P.W. (2015) Dark septate endophytic pleosporalean genera from semiarid areas. Persoonia-Molecular Phylogeny and Evolution of Fungi 35 (1): 87–100. https://doi.org/10.3767/003158515X687669
- Li, G.J., Hyde, K.D., Zhao, R.L., Hongsanan, S., Abdel-Aziz, F.A., Abdel-Wahab, M.A., Alvarado, P., Alves-Silva, G., Ammirati, J.F., Ariyawansa, H.A., Baghela, A., Bahkali, A.H., Beug, M., Bhat, D.J., Bojantchev, D., Boonpratuang, T., Bulgakov, T.S., Camporesi, E., Boro, M.C., Ceska, O., Chakraborty, D., Chen, J.J., Chethana, K.W.T., Chomnunti, P., Consiglio, G., Cui, B.K., Dai, D.Q., Dai, Y.C., Daranagama, D.A., Das, K., Dayarathne, M.C., De Crop, E., De Oliveira, R.J.V., Fragoso de Souza, C.A., de Souza, J.I., Dentinger, B.T.M., Dissanayake, A.J., Doilom, M., Drechsler-Santos, E.R., Ghobad-Nejhad, M., Gilmore, S.P., Góes-Neto, A., Gorczak, M., Haitjema, C.H., Hapuarachchi, K.K., Hashimoto, A., He, M.Q., Henske, J.K., Hirayama, K., Iribarren, M.J., Jayasiri, S.C., Jayawardena, R.S.J., Jeon, S.J., Jerônimo, G.H., Jesus, A.L., Jones, E.B.G., Kang, J.C., Karunarathna, S.C., Kirk, P.M., Konta, S., Kuhnert, E., Langer, E., Lee, H.S., Lee, H.B., Li, W.J., Li, X.H., Liimatainen, K., Lima, D.X., Lin, C.G., Liu, J.K., Liu, X.Z., Liu, Z.Y., Luangsa-ard, J.J., Lücking, R., Lumbsch, H.T., Lumyong, S., Leaño, E.M., Marano, A.V., Matsumura, M., McKenzie, E.H.C., Mongkolsamrit, S., Mortimer, P.E., Nguyen, T.T.T., Niskanen, T., Norphanphoun, C., O’Malley, M.A., Parnmen, S., Pawłowska, J., Perera, R.H., Phookamsak, R., Phukhamsakda, C., Pires-Zottarelli, C.L.A., Raspé, O., Reck, M.A., Rocha, S.C.O., Santiago, A.L.C.M.A.d., Senanayake, I.C., Setti, L., Shang, Q.J., Singh, S.K., Sir, E.B., Solomon, K.V., Song, J., Srikitikulchai, P., Stadler, M., Suetrong, S., Takahashi, H., Takahashi, T., Tanaka, K., Tang, L.P., Thambugala, K.M., Thanakitpipattana, D., Theodorou, M.K., Thongbai, B., Thummarukcharoen, T., Tian, Q., Tibpromma, S., Verbeken, A., Vizzini, A., Vlasák, J., Voigt, K., Wanasinghe, D.N., Wang, Y., Weerakoon, G., Wen, H.A., Wen, T.C., Wijayawardene, N.N., Wongkanoun, S., Wrzosek, M., Xiao, Y.P., Xu, J.C., Yan, J.Y., Yang, J., Yang, S.D., Hu, Y., Zhang, J.F., Zhao, J., Zhou, L.W., Peršoh, D., Phillips, A.J.L. & Maharachchikumbura, S.S.N. (2016) Fungal diversity notes 253–366: taxonomic and phylogenetic contributions to fungal taxa. Fungal diversity 78: 1–237. https://doi.org/10.1007/s13225-021-00489-3
- Liu, Y.J., Whelen, S. & Hall, B.D. (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA polymerase II subunit. Molecular phylogenetics and evolution 16: 1799–1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092
- Liu, Z.P., Zhang, S.N., Cheewangkoon, R., Zhao, Q. & Liu, J.K. (2021) Crassoascoma gen. nov. (Lentitheciaceae, Pleosporales): unrevealing microfungi from the Qinghai-Tibet plateau in China. Diversity 14 (1): 15. https://doi.org/10.3390/d14010015
- Lu, L., Karunarathna, S.C., Hyde, K.D., Suwannarach, N., Elgorban, A.M., Stephenson, S.L., Al-Rejaie, S., Jayawardena, R.S. & Tibpromma, S. (2022) Endophytic fungi associated with coffee leaves in China exhibited in vitro antagonism against fungal and bacterial pathogens. Journal of Fungi 8 (7): 698. https://doi.org/10.3390/jof8070698
- Madagammana, A.D., Samarakoon, M.C., Phukhamsakda, C., Bhunjun, C.S., Huanraluek, N., Liu, J.K. & Hyde, K.D. (2024) Unveiling the holomorph and novel host records of Shearia formosa (Longiostiolaceae, Pleosporales) in China. New Zealand Journal of Botany 62 (2–3): 123–137. https://doi.org/10.1080/0028825X.2023.2267775
- Matsumura, M., Kato, W., Hashimoto, A., Takahashi, Y.S., Shirouzu, T. & Tanaka, K. (2018) Crassiperidium (Pleosporales, Dothideomycetes) a new ascomycetous genus parasitic on Fagus crenata in Japan. Mycosphere 9: 1256–1267. https://doi.org/10.5943/mycosphere/9/6/13
- Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Institute of Electrical and Electronics Engineers, New Orleans LA, 8 pp. https://doi.org/10.1109/GCE.2010.5676129
- Phookamsak, R., Hyde, K.D., Jeewon, R., Bhat, D.J., Jones, E.B.G., Maharachchikumbura, S.S.N., Raspé, O., Karunarathna, S.C., Wanasinghe, D.N., Hongsanan, S., Doilom, M., Tennakoon, D.S., Machado, A.R., Firmino, A.L., Ghosh, A., Karunarathna, A., Mešić, A., Dutta, A.K., Thongbai, B., Devadatha, B., Norphanphoun, C., Senwanna, C., Wei, D., Pem, D., Ackah, F.K., Wang, G.N., Jiang, H.B., Madrid, H., Lee, H.B., Goonasekara, I.D., Manawasinghe, I.S., Kušan, I., Cano, J., Gené, J., Li, J.F., Das, K., Acharya, K., Raj, K.N.A., Latha, K.P.D., Chethana, K.W.T., He, M.Q., Dueñas, M., Jadan, M., Martín, M.P., Samarakoon, M.C., Dayarathne, M.C., Raza, M., Park, M.S., Telleria, M.T., Chaiwan, N., Matočec, N., de Silva, N.I., Pereira, O.L., Singh, P.N., Manimohan, P., Uniyal, P., Shang, Q.J., Bhatt, R.P., Perera, R.H., Alvarenga, R.L.M.A., Nogal-Prata, S., Singh, S.K., Vadthanarat, S., Oh, S.Y., Huang, S.K., Rana, S., Konta, S., Paloi, S., Jayasiri, S.C., Jeon, S.J., Mehmood, T., Gibertoni, T.B., Nguyen, T.T.T., Singh, U., Thiyagaraja, V., Sarma, V.V., Dong, W., Yu, X.D., Lu, Y.Z., Lim, Y.W., Chen, Y., Tkalčec, Z., Zhang, Z.F., Luo, Z.L., Daranagama, D.A., Thambugala, K.M., Camporesi, E., Bulgakov, T.S., Dissanayake, A.J., Senanayake, I.C., Dai, D.Q., Tang, L.Z., Khan, S., Zhang, H., Promputtha, I., Cai, L., Chomnunti, P., Zhao, R.L., Lumyong, S., Boonmee, S., Wen, T.C., Mortimer, P.E. & Xu, J.C. (2019) Fungal diversity notes 929–1035: taxonomic and phylogenetic contributions on genera and species of fungi. Fungal Diversity 95: 1–273. https://doi.org/10.1007/s13225-019-00421-w
- Phookamsak, R., Manamgoda, D.S., Li, W.J., Dai, D.Q., Singtripop, C. & Hyde, K.D. (2015) Poaceascoma helicoides gen et sp. nov., a new genus with scolecospores in Lentitheciaceae. Cryptogamie, Mycologie 36 (2): 225–236. https://doi.org/10.7872/crym/v36.iss2.2015.225
- Phukhamsakda, C., McKenzie, E.H.C., Phillips, A.J.L., Jones, E.B.G., Bhat, D.J., Stadler, M., Bhunjun, C.S., Wanasinghe, D.N., Thongbai, B., Camporesi, E., Ertz, D., Jayawardena, R.S., Perera, R.H., Ekanayake, A.H., Tibpromma, S., Doilom, M., Xu, J. & Hyde, K.D. (2020) Microfungi associated with Clematis (Ranunculaceae) with an integrated approach to delimiting species boundaries. Fungal diversity 102: 1–203. https://doi.org/10.1007/s13225-020-00448-4
- Quaedvlieg, W., Verkley, G.J.M., Shin, H.D., Barreto, R.W., Alfenas, A.C., Swart, W.J., Groenewald, J.Z. & Crous, P.W. (2013) Sizing up Septoria. Studies in Mycology 75: 307–390. https://doi.org/10.3114/sim0017
- Rambaut, A. (2014) FigTree v14: tree figure drawing tool. Available from: http://tree.bio.ed.ac.uk/software/figtree/ (accessed 9 December 2024)
- Rathnayaka, A.R., Tennakoon, D.S., Jones, G.E., Wanasinghe, D.N., Bhat, D.J., Priyashantha, A.H., Stephenson, S.L., Tibpromma, S. & Karunarathna, S.C. (2024) Significance of precise documentation of hosts and geospatial data of fungal collections, with an emphasis on plant-associated fungi. New Zealand Journal of Botany: 1–28. https://doi.org/10.1080/0028825X.2024.2381734
- Rehner, S. (2001) Primers for Elongation Factor 1-α (EF1-α). [http://ocid.nacse.org/research/deephyphae/EF1primer.pdf]
- Ronquist, F.R. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574. https://doi.org/10.1093/bioinformatics/btg180
- Rosas-Medina, M., Maciá-Vicente, J.G. & Piepenbring, M. (2019) Diversity of fungi in soils with different degrees of degradation in Germany and Panama. Mycobiology 48 (1): 20–28. https://doi.org/10.1080/12298093.2019.1700658
- Saccardo, P.A. (1883) Sylloge pyrenomycetum. Vol. II. Sylloge Fungorum 2: 1–813. [https://www.biodiversitylibrary.org/page/4278109]
- Sar, P., Zhang, Y., Wang, H.K., Fournier, J., Crous, P.W., Jeewon, R., Pointing, S.B. & Hyde, K.D. (2009) Towards a phylogenetic clarification of Lophiostoma/Massarina and morphologically similar genera in the Pleosporales. Fungal Diversity 38: 225–251.
- Schoch, C.L., Shoemaker, R.A., Seifert, K.A., Hambleton, S., Spatafora, J.W. & Crous, P.W. (2006) A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia 98 (6): 1041–1052. https://doi.org/10.1080/15572536.2006.11832632
- Schoch, C.L., Crous, P.W., Groenewald, J.Z., Boehm, E.W.A., Burgess, T.I., De Gruyter, J., De Hoog, G.S., Dixon, L.J., Grube, M., Gueidan, C., Harada, Y., Hatakeyama, S., Hirayama, K., Hosoya, T., Huhndorf, S.M., Hyde, K.D., Jones, E.B.G., Kohlmeyer, J., Kruys, Å., Li, Y.M., Lücking, R., Lumbsch, H.T., Marvanová, L., Mbatchou, J.S., McVay, A.H., Miller, A.N., Mugambi, G.K., Muggia, L., Nelsen, M.P., Nelson, P., Owensby, C.A., Phillips, A.J.L., Phongpaichit, S., Pointing, S.B., Pujade-Renaud, V., Raja, H.A., Plata, E.R., Robbertse, B., Ruibal, C., Sakayaroj, J., Sano, T., Selbmann, L., Shearer, C.A., Shirouzu, T., Slippers, B., Suetrong, S., Tanaka, K., Volkmann-Kohlmeyer, B., Wingfield, M.J., Wood, A.R., Woudenberg, J.H.C., Yonezawa, H., Zhang, Y. & Spatafora, J.W. (2009) A class-wide phylogenetic assessment of Dothideomycetes. Studies in Mycology 64: 1–15. https://doi.org/10.3114/sim.2009.64.01
- Senanayake, I.C., Rathnayaka, A.R., Marasinghe, D.S., Calabon, M.S., Gentekaki, E., Lee, H.B., Hurdeal, V.G., Pem, D., Dissanayake, L.S., Wijesinghe, S.N., Bundhun, D., Nguyen, T.T., Goonasekara, I.D., Abeywickrama, P.D., Bhunjun, C.S., Jayawardena, R.S., Wanasinghe, D.N., Jeewon, R., Bhat, D.J. & Xiang, M.M. (2020) Morphological approaches in studying fungi: collection, examination, isolation, sporulation, and preservation. Mycosphere 11: 2678–2754. https://doi.org/10.5943/mycosphere/11/1/20
- Senwanna, C., Wanasinghe, D., Bulgakov, T.S., Wang, Y., Bhat, D., Tang, A., Mortimer, P., Xu, J.C., Hyde, K.D. & Phookamsak, R. (2019) Towards a natural classification of Dothidotthia and Thyrostroma in Dothidotthiaceae (Pleosporineae, Pleosporales). Mycosphere 10: 701–738. https://doi.org/10.5943/mycosphere/10/1/15
- Shoemaker, R.A. & Babcock, C.E. (1989) Phaeosphaeria. Canadian Journal of Botany 67 (5): 1500–1599. https://doi.org/10.1139/b89-199
- Silvestro, D. & Michalak, I. (2010) RaxmlGUI: a graphical front-end for RAxML. Organisms Diversity & Evolution 12: 335–337. https://doi.org/10.1007/s13127-011-0056-0
- Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22 (21): 2688–2690. https://doi.org/10.1093/bioinformatics/btl446
- Su, Y.Y., Qi, Y.L. & Cai, L. (2012) Induction of sporulation in plant pathogenic fungi. Mycology 3: 195–200. https://doi.org/10.1080/21501203.2012.719042
- Su, H.Y., Luo, Z.L., Liu, X.Y., Su, X.J., Hu, D.M., Zhou, D.Q., Bahkali, A.H. & Hyde, K.D. (2016) Lentithecium cangshanense sp. nov. (Lentitheciaceae) from freshwater habitats in Yunnan Province, China. Phytotaxa 267 (1): 61–69. https://doi.org/10.11646/phytotaxa.267.1.6
- Sung, G.H., Sung, J.M., Hywel-Jones, N.L. & Spatafora, J.W. (2007) A multi-gene phylogeny of Clavicipitaceae (Ascomycota Fungi): identification of localized incongruence using a combinational bootstrap approach. Molecular phylogenetics and evolution 44 (3): 1204–1223. https://doi.org/10.1016/j.ympev.2007.03.011
- Tang, A.M.C., Jeewon, R. & Hyde, K.D. (2005) Successional patterns of microfungi in fallen leaves of Castanopsis fissa (Fagaceae) in Hong Kong Forest. Canadian Journal of Microbiology 51 (11): 967–974. https://doi.org/10.1139/w05-086
- Tanaka, K. & Harada, Y. (2005) Bambusicolous fungi in Japan (6): Katumotoa, a new genus of phaeosphaeriaceous ascomycetes. Mycoscience 46: 313–318. https://doi.org/10.1007/S10267-005-0251-Y
- Tanaka, K., Hashimoto, A., Matsumura, M. & Sato, T. (2017) Brevicollum, a new genus in Neohendersoniaceae, Pleosporales. Mycologia 109: 608–619. https://doi.org/10.1080/00275514.2017.1387432
- Tanaka, K., Hirayama, K., Yonezawa, H., Sato, G., Toriyabe, A., Kudo, H., Hashimoto, A., Matsumura, M., Harada, Y., Kurihara, Y., Shirouzu, T. & Hosoya, T. (2015) Revision of the massarineae (Pleosporales, Dothideomycetes). Studies in mycology 82: 75–136. https://doi.org/10.1016/j.simyco.2015.10.002
- Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic acids research 25 (24): 4876–4882. https://doi.org/10.1093/nar/25.24.4876
- Tian, W.H., Liu, J.W., Jin, Y., Chen, Y.P., Zhou, Y.F., Wu, K., Su, P.W., Guo, X.Y., Wanasinghe, D.N., Hyde, K.D., Liu, J.K. & Maharachchikumbura, S.S.N. (2024) Morphological and phylogenetic studies of Ascomycota from gymnosperms in Sichuan Province, China. Mycosphere 15 (1): 1794–1900. https://doi.org/10.5943/mycosphere/15/1/16
- Tibpromma, S., Hyde, K.D., Jeewon, R., Maharachchikumbura, S.S.N., Liu, J.K., Bhat, D.J., Jones, E.B.G., McKenzie, E.H.C., Camporesi, E., Bulgakov, T.S., Doilom, M., Monteiro de Azevedo Santiago, A.L.C.M., Das, K., Manimohan, P., Gibertoni, T.B., Lim, Y.W., Ekanayaka, A.H., Thongbai, B., Lee, H.B., Yang, J.B., Kirk, P.M., Sysouphanthong, P., Singh, S.K., Boonmee, S., Dong, W., Raj, K.N.A., Latha, K.P.D., Phookamsak, R., Phukhamsakda, C., Konta, S., Jayasiri, S.C., Norphanphoun, C., Tennakoon, D.S., Li, J., Dayarathne, M.C., Perera, R.H., Xiao, Y., Wanasinghe, D.N., Senanayake, I.C., Goonasekara, I.D., de Silva, N.I., Mapook, A., Jayawardena, R.S., Dissanayake, A.J., Manawasinghe, I.S., Chethana, K.W.T., Luo, Z.L., Hapuarachchi, K.K., Baghela, A., Soares, A.M., Vizzini, A., Meiras-Ottoni, A., Mešić, A., Dutta, A.K., Fragoso de Souza, C.A., Richter, C., Lin, C.G., Chakrabarty, D., Daranagama, D.A., Lima, D.X., Chakraborty, D., Ercole, E., Wu, F., Simonini, G., Vasquez, G., da Silva, G.A., Plautz Jr., H.L.P., Ariyawansa, H.A., Lee, H., Kušan, I., Song, J., Sun, J.Z., Karmakar, J., Hu, K., Semwal, K.C., Thambugala, K.M., Voigt, K., Acharya, K., Rajeshkumar, K.C., Ryvarden, L., Jadan, M., Hosen, M.I., Mikšík, M., Samarakoon, M.C., Wijayawardene, N.N., Kim, N.K., Matočec, N., Singh, P.N., Tian, Q., Bhatt, R.P., de Oliveira, R.J.V., Tulloss, R.E., Aamir, S., Kaewchai, S., Marathe, S.D., Khan, S., Hongsanan, S., Adhikari, S., Mehmood, T., Bandyopadhyay, T.K., Svetasheva, T.Y., Nguyen, T.T.T., Antonín, V., Li, W.J., Wang, Y., Indoliya, Y., Tkalčec, Z., Elgorban, A.M., Bahkali, A.H., Tang, A.M.C., Su, H.Y., Zhang, H., Promputtha, I., Luangsa-ard, J., Xu, J., Yan, J.Y., Kang, J.C., Stadler, M., Mortimer, P.E., Chomnunti, P., Zhao, Q., Phillips, A.J.L., Nontachaiyapoom, S., Wen, T.C. & Karunarathna, S.C. (2017) Fungal diversity notes 491–602: taxonomic and phylogenetic contributions to fungal taxa. Fungal diversity 83: 1–261. https://doi.org/10.1007/s13225-017-0378-0
- Tibpromma, S., Hyde, K.D., McKenzie, E.H.C., Bhat, D.J., Phillips, A.J.L., Wanasinghe, D.N., Samarakoon, M.C., Jayawardena, R.S., Dissanayake, A.J., Tennakoon, D.S., Doilom, M., Phookamsak, R., Tang, A.M.C., Xu, J.-C., Mortimer, P.E., Promputtha, I., Maharachchikumbura, S.S.N., Khan, S. & Karunarathna, S.C. (2018) Fungal diversity notes 840–928: micro-fungi associated with Pandanaceae. Fungal Diversity 93 (1): 1–160. https://doi.org/10.1007/s13225-018-0408-6
- Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of bacteriology 172 (8): 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
- Vu, D., Groenewald, M., de Vries, M., Gehrmann, T., Stielow, B., Eberhardt, U., Al-Hatmi, A., Groenewald, J.Z., Cardinali, G., Houbraken, J., Boekhout, T., Crous, P.W., Robert, V. & Verkley, G.J.M. (2019) Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. Studies in Mycology 92: 135–154. https://doi.org/10.1016/j.simyco.2018.05.001
- Wanasinghe, D.N., Jones, E.G., Camporesi, E., Boonmee, S., Karunarathna, S.C., Thines, M., Mortimer, P.E., Xu, J.C. & Hyde, K.D. (2014) Dematiopleospora mariae gen. sp. nov., from Ononis spinosa in Italy. Cryptogamie, Mycologie 35 (2): 105–117. https://doi.org/10.7872/crym.v35.iss2.2014.105
- Wanasinghe, D.N., Jones, E.B.G., Camporesi, E., Boonmee, S., Ariyawansa, H.A., Wijayawardene, N.N., Mortimer, P.E., Xu, J., Yang, J.B. & Hyde, K.D. (2014) An exciting novel member of Lentitheciaceae in Italy from Clematis vitalba. Cryptogamie, Mycologie 35 (4): 323–337. https://doi.org/10.7872/crym.v35.iss4.2014.323
- Wanasinghe, D.N., Jeewon, R., Peršoh, D., Jones, E., Camporesi, Bulgakov, T., Gafforov, Y. & Hyde, K. (2018) Taxonomic circumscription and phylogenetics of novel didymellaceous taxa with brown muriform spores. Studies in Fungi 3: 152–175. https://doi.org/10.5943/sif/3/1/17
- Wanasinghe, D.N., Hyde, K.D., Jeewon, R., Crous, P.W., Wijayawardene, N.N., Jones, E.B.G., Bhat, D.J., Phillips, A.J.L., Groenewald, J.Z., Dayarathne, M.C., Phukhamsakda, C., Thambugala, K.M., Bulgakov, T.S., Camporesi, E., Gafforov, Y.S., Mortimer, P.E. & Karunarathna, S.C. (2017) Phylogenetic revision of Camarosporium (Pleosporineae, Dothideomycetes) and allied genera. Studies in Mycology 87: 207–256. https://doi.org/10.1016/j.simyco.2017.08.001
- Wanasinghe, D.N., Phukhamsakda, C., Hyde, K.D., Jeewon, R., Lee, H.B., Jones, E.B.G., Tibpromma, S., Tennakoon, D.S., Dissanayake, A.J., Jayasiri, S.C., Gafforov, Y., Camporesi, E., Bulgakov, T.S., Ekanayake, A.H., Perera, R.H., Samarakoon, M.C., Goonasekara, I.D., Mapook, A., Li, W.J., Senanayake, I.C., Li, J., Norphanphoun, C., Doilom, M., Bahkali, A.H., Xu, J., Mortimer, P.E., Tibell, L., Tibell, S. & Karunarathna, S.C. (2018) Fungal diversity notes 709–839: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on Rosaceae. Fungal diversity 89: 1–236. https://doi.org/10.1007/s13225-018-0395-7
- Wanasinghe, D.N., Wijayawardene, N.N., Xu, J., Cheewangkoon, R. & Mortimer, P.E. (2020) Taxonomic novelties in Magnolia-associated pleosporalean fungi in the Kunming Botanical Gardens (Yunnan, China). Plos one 15 (7): e0235855. https://doi.org/10.1371/journal.pone.0235855
- Wang, K., Chen, S.L., Dai, Y.C., Jia, Z.F., Li, T.H., Liu, T.Z., Phurbu, D., Mamut, R., Sun, G.Y., Bau, T., Wei, S.L., Yang, Z.L., Yuan, H.S., Zhang, X.G. & Cai, L. (2021) Overview of China’s nomenclature novelties of fungi in the new century (2000–2020). Mycosystema 40 (4): 822–833. https://doi.org/10.13346/j.mycosystema.210064
- White, T.J., Bruns, T., Lee, S.J.W.T. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Ed.) PCR protocols: A guide to methods and applications. Academic Press, New York, pp. 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Wijayawardene, N.N., Dai, D.-Q., Zhu, M.-L., Wanasinghe, D.N., Kumla, J., Zhang, G.-Q., Zhang, T.-T., Han, L.-S., Tibpromma, S. & Chen, H.-H. (2022) Fungi associated with dead branches of Magnolia grandiflora: A case study from Qujing, China. Frontiers in Microbiology 13. https://doi.org/10.3389/fmicb.2022.954680
- Wijayawardene, N.N., Hyde, K.D., Bhat, D.J., Goonasekara, I.D., Nadeeshan, D., Camporesi, E., Schumacher, R.K. & Wang, Y. (2015) Additions to brown spored coelomycetous taxa in Massarinae, Pleosporales: introducing Phragmocamarosporium gen. nov. and Suttonomyces gen. nov. Cryptogamie. Mycologie 36 (2): 213–224. https://doi.org/10.7872/crym/v36.iss2.2015.213
- Wijayawardene, N.N., Hyde, K.D., Rajeshkumar, K.C., Hawksworth, D., Madrid, H., Kirk, P., Braun, U., Singh, R., Crous, P., Kukwa, M., Lücking, R., Kurtzman, C., Yurkov, A., Haelewaters, D., Aptroot, A., Lumbsch, T., Timdal, E., Ertz, D., Etayo, J. & Karunarathna, S. (2017) Notes for genera: Ascomycota. Fungal diversity 86. https://doi.org/10.1007/s13225-017-0386-0
- Wijayawardene, N.N., Phillips, A.J.L., Pereira, D.S., Dai, D.Q., Aptroot, A., Monteiro, J.S., Druzhinina, I.S., Cai, F., Fan, X., Selbmann, L., Coleine, C., Castañeda-Ruiz, R.F., Kukwa, M., Flakus, A., Fiuza, P.O., Kirk, P.M., Kumar, K.C.R., Arachchi, I.S.L., Suwannarach, N., Tang, L.Z., Boekhout, T., Tan, C.S., Jayasinghe, R.P.P.K. & Thines, M. (2022) Forecasting the number of species of asexually reproducing fungi (Ascomycota and Basidiomycota). Fungal Diversity 114 (1): 463–490. https://doi.org/10.1007/s13225-022-00500-5
- Wubet, T., Christ, S., Schöning, I., Boch, S., Gawlich, M., Schnabel, B., Fischer, M. & Buscot, F. (2012) Differences in soil fungal communities between European beech (Fagus sylvatica L.) dominated forests are related to soil and understory vegetation. Plos One 10: 1–14. https://doi.org/10.1371/journal.pone.0047500
- Yang, E.F., Karunarathna, S.C., Tibpromma, S., Stephenson, S.L., Promputtha, I., Elgorban, A.M., Al-Rejaie, S. & Chomnunti, P. (2023) Endophytic fungi associated with mango show in vitro antagonism against bacterial and fungal pathogens. Agronomy 13 (1): 169. https://doi.org/10.3390/agronomy13010169
- Yang, Y., Zhang, S.N., Yu, X.D. & Liu, J.K. (2022) Pseudokeissleriella bambusicola gen. et sp. nov. (Lentitheciaceae, Pleosporales) from bamboos in Sichuan Province, China. Phytotaxa 560 (3): 263–273. https://doi.org/10.11646/PHYTOTAXA.560.3.1
- Yu, X., Xiang, C. & Peng, H. (2018) Taxonomy in the Kunming Institute of Botany (KIB): progress during the past decade (2008–2018) and perspectives on future development. Plant diversity 40 (4): 147–157. https://doi.org/10.1016/j.pld.2018.07.002
- Zhang, Y., Wang, H.K., Fournier, J., Crous, P.W., Pointing, S.B. & Hyde, K.D. (2009) Towards a phylogenetic clarification of Lophiostoma/Massarina and morphologically similar genera in the Pleosporales. Fungal Diversity 38: 225–251.