Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2024-03-05
Page range: 285-293
Abstract views: 75
PDF downloaded: 3

Phylogenetic position of Vanda coelestis (Rchb.f.) Motes (Orchidaceae; Aeridinae): evidence from complete plastome and combined traditional sequences

Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Fujian Colleges and Universities Engineering Research Institute of Conservation and Utilization of Natural Bioresources, Fujian Agriculture and Forestry University, Fuzhou 350002, China. Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences / Key Laboratory of Crop Gene Re- sources and Germplasm Enhancement in Southern China, Danzhou 571737, China.
Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou 350002, China. Fujian Colleges and Universities Engineering Research Institute of Conservation and Utilization of Natural Bioresources, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
foxtail orchid plastome orchid phylogenetics taxonomic treatment Monocots

Abstract

The taxonomic status of Vanda coelestis (Rchb.f.) Motes remains a matter of discussion. So far, molecular systematic work has not been used to investigate. Here, we conducted the phylogenetic analyses using two datasets, the complete plastome and a combination of traditional molecular sequences (nrITS, matK, psbA-trnH, and trnL-trnF). Plastid-based phylogenetic trees indicated that this species was deeply embedded within the genus Vanda. In the analysis based on combined traditional sequences dataset, this species was further supported as sister to V. vietnamica with strong support.

References

  1. Blume, C.L. (1825) Bijdragen tot de flora van Nederlandsch Indië. Ter Lands Drukkerij, Batavia, 286 pp.
  2. Blume, C. (1849) Rumphia. vol. 4. Lugduni-Batavorum, 49 pp.
  3. Christenson, E.A. (1985) Nomenclatural changes in the Orchidaceae subtribe Sarcanthinae. Indian Orchid Journal 1: 156.
  4. Christenson, E.A. (1994) Taxonomy of the Aeridinae with an infrageneric classification of Vanda Jones ex R.Br. In: Pridgeon, A.M. (Ed.) Proceedings of the 14th World Orchid Conference. Glasgow, HMSO, pp. 206–216.
  5. Gardiner, L.M. & Cribb, P.C. (2013) Vanda. Renziana 3: 1–96.
  6. Gardiner, L.M. (2012) New combinations in the genus Vanda (Orchidaceae). Phytotaxa 61 (1): 47–54. https://doi.org/10.11646/phytotaxa.61.1.4
  7. Gardiner, L.M., Kocyan, A., Motes, M., Roberts, D.L. & Emerson, B.C. (2013) Molecular phylogenetics of Vanda and related genera (Orchidaceae). Botanical Journal of the Linnean Society 173 (4): 549–572. https://doi.org/10.1111/boj.12102
  8. Griffith, W. (1851) Vanda coerulescens. Notulae ad plantas Asiaticas 3: 352.
  9. Guillaumin, A. (1930) Especes et localites nouvelles d’Orchidees-Vandees d’Indo-Chine. Bulletin de la Société Botanique de France 77 (3): 335.
  10. Higgins, W.E. & Motes, M. (2012) A new Vanda (Orchidaceae) from the Philippines, Vanda barnesii. Orchid Digest 76: 240–242.
  11. Hu, H.H. (1925) Nomenclatoral changes for some Chinese orchids. Rhodora 27: 105–107.
  12. Jin, J.J., Yu, W.B., Yang, J.B., Song, Y., de Pamphilis, C.W., Yi, T.S. & Li, D.Z. (2020) GetOrganelle: A fast and versatile toolkit for accu-rate de novo assembly of organelle genomes. Genome Biology 21: 241. https://doi.org/10.1186/s13059-020-02154-5
  13. Kent, A.H. (1891) Manual of Orchidaceous Plants Cultivated Under Glass in Great Britain (part seven). 53 pp.
  14. Kumar, S., Stecher, G. & Tamura, K. (2016) MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33: 1870–1874. https://doi.org/10.1093/molbev/msw054
  15. Li, M.H., Zhang, G.Q., Lan, S.R., Liu, Z.J. & the China Phylogeny Consortium (2016) A molecular phylogeny of Chinese orchids. Journal of Systematics and Evolution 54: 349–362. https://doi.org/10.1111/jse.12187
  16. Lindley, J. (1847) Vanda coerulea. Edward’s Botanical Register 33: t. 30.
  17. Lindley, J. (1853) 22: Vanda. Folia orchidacea, an enumeration of the known species of orchids 4: 1–11.
  18. Liu, D.K., Tu, X.D., Zhao, Z., Zeng, M.Y., Zhang, S., Ma, L., Zhang, G.Q., Wang, M.M., Liu, Z.J., Lan, S.R., Li, M.H. & Chen, S.P. (2020) Plastid phylogenomic data yield new and robust insights into the phylogeny of Cleisostoma–Gastrochilus clades (Orchidaceae, Aeridinae). Molecular Phylogenetics and Evolution 145: 106729. https://doi.org/10.1016/j.ympev.2019.106729
  19. Loureiro, J. de (1790) Flora Cochinchinensi, vol. 2. Lisbon: Ulyssipone, Typis, et Expensis Academicis, pp. 521–525.
  20. Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: 2010 Gateway Computing Environments Workshop (GCE). IEEE, New Orleans, pp. 1–8. https://doi.org/10.1109/GCE.2010.5676129
  21. Motes, M.R. (2021) The Natural Genus Vanda: A Monograph. Redland Press, Florida, pp. 215–217.
  22. Qu, X.J., Moore, M.J., Li, D.Z. & Yi, T.S. (2019) PGA: A software package for rapid, accurate, and flexible batch annotation of plastomes. Plant Methods 15: 50. https://doi.org/10.1186/s13007-019-0435-7
  23. Reichenbach, H.G. (1874) Xenia orchidacea: Beitrage zur Kenntniss der Orchideen, 2. Brockhaus, Leipzig, 138 pp.
  24. Reichenbach, H.G. (1885) Neue orchideen-species. Flora oder Allgemeine Botanische Zeitung 68 (15): 301.
  25. Ridley, H.N. (1896) The Orchideae and Apostasiaceae of the Malay Peninsula. The Journal of the Linnean Society, Botany 32: 213–416.
  26. Ronquist, F., Teslenko, M., Van Der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539–542.
  27. Stamatakis, A., Hoover, P. & Rougemont, J., (2008) A rapid bootstrap algorithm for the RAxML web-servers. Systematic Biology 75: 758–771. https://doi.org/10.1080/10635150802429642
  28. Suarez, W. & Cootes, J.E. (2007) Contributions to Philippine orchidology. Philippine Orchid Review 15: 16–20.
  29. Swofford, D. (2003) PAUP: phylogenetic analysis using parsimony and other methods, version 4. Sinauer Associates, Sunderland.
  30. Tang, T., Wang, F.T. (1974) Plantae novae Orchidacearum Hainanensium. Acta Phytotaxonomica Sinica 12 (1): 35–49.
  31. Tu, X.D., Liu, D.K., Xu, S.W., Zhou, C.Y., Gao, X.Y., Zeng, M.Y., Zhang, S., Chen, J.L., Ma, L., Zhou, Z., Huang, M.Z., Chen, S.P., Liu, Z.J., Lan, S.R. & Li, M.H. (2021) Plastid phylogenomics improves resolution of phylogenetic relationship in the Cheirostylis and Goodyera clades of Goodyerinae (Orchidoideae, Orchidaceae). Molecular Phylogenetics and Evolution 164: 107269. https://doi.org/10.1016/j.ympev.2021.107269
  32. Wallich, N. (1828–1849) A numerical list of dried specimens of plants, in the East India Companys Museum collected under the superintendence of Dr. Wallich of the Company’s Botanic Garden at Calcutta. London.
  33. Xu, S.W., Gao, X.Y., Zeng, M.Y., Zhou, C.Y., Liu, Z.J. & Li, M.H. (2023) Phylogenetics of two rhizomatous epiphytic species of Cymbidium (Orchidaceae; Cymbidieae): evidence from analyses of nuclear and plastid DNA. Phytotaxa 598: 97–104. https://doi.org/10.11646/phytotaxa.598.1.8
  34. Zhang, G.Q., Liu, K.W., Chen, L.J., Xiao, X.J., Zhai, J.W., Li, L.Q., Cai, J., Hsiao, Y.Y., Rao, W.H., Huang, J., Ma, X.Y., Chung, S.W., Huang, L.Q., Tsai, W.J. & Liu, Z.J. (2013) A new molecular phylogeny and a new genus, Pendulorchis, of the Aerides–Vanda alliance (Orchidaceae: Epidendroideae). PLoS One 8 (4): e60097. https://doi.org/10.1371/journal.pone.0060097
  35. Zhang, D., Gao, F., Jakovlić, I., Zou, H., Zhang, J., Li, W.X. & Wang, G.T. (2020) PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Molecular Ecology Resources 20 (1): 348–355. https://doi.org/10.1111/1755-0998.13096
  36. Zou, L.H., Liu, Z.J. & Huang, J.X. (2014) Vanda malipoensis, a new species of Vanda (Orchidaceae: Epidendroideae; Vandeae) from China: evidence from morphological and molecular phylogenetic analyses. Phytotaxa 186 (2): 87–96.
  37. Zou, L.H., Wu, X.Y., Lin, M., Chen, L.J. & Liu, Z.J. (2016) Vanda funingensis, a new species of Orchidaceae (Epidedroideae; Vandeae; Aeridinae) from China: evidence from morphology and DNA. Phytotaxa 260 (1): 1–13. http://dx.doi.org/10.11646/phytotaxa.186.2.3