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Type: Article
Published: 2024-08-13
Page range: 262-270
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Podoscypha ahuensis sp. nov. (Polyporales, Basidiomycota) evidenced by the morphological characters and phylogenetic analyses

College of Life Sciences, Anhui University, Hefei 230601, P.R. China
College of Life Sciences, Anhui University, Hefei 230601, P.R. China
College of Life Sciences, Anhui University, Hefei 230601, P.R. China
Fungi Podoscyphaceae Phylogeny Taxonomy Wood-inhabiting fungi Resudial clade

Abstract

Using multiple lines of evidence, namely, morphological features and molecular evidence, we propose a new wood-inhabiting fungus, Podoscypha ahuensis. The species is characterized by its smooth, salmon to flesh pink or buff yellowish pileal surface, distinct swollen gloeocystidia, and the presence of pilocystidia and caulocystidia. Additionally, its basidiospores are ellipsoid and thin-walled (4.2–6.5 × 3–4.5 μm). We discovered this fungus on angiosperms in subtropical China. Sequences of the internal transcribed spacer (ITS) and the large subunit of nuclear ribosomal RNA (nLSU) gene regions of the studied samples were generated, and phylogenetic analyses were performed using the maximum likelihood, maximum parsimony, and Bayesian inference methods. Phylogenetic analyses based on the molecular data of ITS + nLSU sequences showed that P. ahuensis belonged to the Podoscypha, which, in turn, belongs to the family podoscyphaceae and is nested in the resudial clade. Further investigation was performed on more representative taxa in the Podoscypha based on ITS + nLSU sequences, the results of which demonstrated that the species P. ahuensis formed a monophyletic lineage with a strong support [99% BS, 1.00 BPP, 97% BP] and then grouped with P. brasiliensis and P. tropica.

References

  1. Bernicchia, A. & Gorjón, S.P. (2010) Fungi Europaei 12: Corticiaceaes l. Edizioni Candusso, Lomazzo, pp. 1–1007.
  2. Binder, M., Hibbett, D.S., Larsson, K.H., Larsson, E., Langer, E. & Langer, G. (2005) The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes). Systematics and Biodiversity 3 (2): 113–157. https://doi.org/10.1017/S1477200005001623
  3. Binder, M., Justo, A., Riley, R., Salamov, A., López-Girálde, F., Sjökvist, E., Copeland, A., Foster, B., Sun, H., Larsson, E., Larsson, K.H., Townsend, J., Grigoriev, I.V. & Hibbett, D.S. (2013) Phylogenetic and phylogenomic overview of the Polyporales. Mycologia 105: 1350–1373. https://doi.org/10.3852/13-003
  4. Boidin, J. (1959) Hétérobasidiomycèstes saprophytes et Homobasidiomycètes résupinés: VI. Essai sur le genre Stereum sensu lato. Revuede Mycologie 24: 197–225. https://doi.org/10.3406/linly.1959.8081
  5. Boidin, J. (1960) Le genre Stereum Pers. s.l. au Congo belge. Bulletin du Jardin Botanique de l’État à Bruxelles 30: 283–355. https://doi.org/10.2307/3667306
  6. Choi, J.J. & Kim, S.H. (2017). A genome tree of life for the fungi kingdom. Proceedings of the National Academy of Sciences of the United States of America 114: 9391–9396. https://doi.org/10.1073/pnas.1711939114
  7. Dai, Y.C. (2010) Hymenochaetaceae (Basidiomycota) in China. Fungal Diversity 45: 131–343. https://doi.org/10.1007/s13225-010-0066-9
  8. Dai, Y.C. (2012) Polypore diversity in China with an annotated checklist of Chinese polypores. Mycoscience 53: 49–80. https://doi. org/10.1007/s10267-011-0134-3
  9. Dai, Y.C., Cui, B.K., Si, J., He, S.H., Hyde, K.D., Yuan, H.S., Liu, X.Y. & Zhou, L.W. (2015) Dynamics of the worldwide number of fungi with emphasis on fungal diversity in China. Mycological Progress 14: 1–9. https://doi.org/10.1007/s11557-015-1084-5
  10. Dhingra, G.S. (1987) The genus Phlebiopsis in the Eastern Himalayas. Nova Hedwigia 44: 221–227.
  11. Douanla-Meli, C. & Langer, E. (2004) A taxonomic study of the family Podoscyphaceae (Basidiomycetes), new species and new records in Cameroon. Mycotaxon 90: 323–335.
  12. Drechsler-Santos, E.R., Gibertoni, T.B. & de Queiroz Cavalcanti, M.A. (2007) Podoscypha aculeata, a new record for the neotropics. Mycotaxon 101: 69–72. https://doi.org/10.1111/j.1439-0507.2006.01351.x
  13. Floudas, D. & Hibbett, D.S. (2015) Revisiting the taxonomy of Phanerochaete (Polyporales, Basidiomycota) using a four gene dataset and extensive ITS sampling. Fungal Biology 119: 679–719. https://doi.org/10.1016/j.funbio.2015.04.003
  14. Gilbertson, R.L. & Ryvarden, L. (1987) North American polypores 1-2. Fungiflora, Oslo, pp. 1–433.
  15. Guindon, S. & Gascuel, O. (2003) A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood. Systematic Biology 52 (5): 696–704. https://doi.org/10.1080/10635150390235520
  16. Guindon, S., Dufayard, J.F., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Systematic Biology 59: 307–321. https://doi.org/10.1093/sysbio/syq010
  17. Hall, T.A. (1999) A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98.
  18. Hibbett, D., Abarenkov, K., Kõljalg, U., Öpik, M., Chai, B., Cole, J., Wang, Q., Crous, P., Robert, V., Helgason, T., Herr, J.R., Kirk, P., Lueschow, S., Donnell, K., Nilsson, R.H., Oono, R., Schoch, C., Smyth, C., Walker, D.M., Porras-Alfaro, A., Taylor, J.W. & Geiser, D.M. (2016) Sequence-based classification and identification of Fungi. Mycologia 108 (6): 1049–1068. http://dx.doi.org/10.3852/16-130
  19. Hibbett, D.S., Binder, M., Bischoff, J.F., Blackwell, M., Cannon, P.F., Eriksson, O.E., Huhndorf, S., James, T., Kirk, P.M., Lücking, R., Thorsten, L.H., Lutzoni, F., Matheny, P.B., McLaughlin, D.J., Powell, M.J., Redhead, S., Schoch, C.L., Spatafora, J.W., Stalpers, J.A., Vilgalys, R., Aime, M.C., Aptroot, A., Bauer, R., Begerow, D., Benny, G.L., Castlebury, L.A., Crous, P.W., Dai,Y.C., Gams, W., Geiser, D.M., Griffith, G.W., Gueidan, C., Hawksworth, D.L., Hestmark, G., Hosaka, K., Humber, R.A., Hyde, K.D., Ironside, J.E., Kõljalg, U., Kurtzman, C.P., Larsson, K.H., Lichtwardt, R., Longcore, J., Miadlikowska, J., Miller, A., Moncalvo, J.M., Mozley-Standridge, S., Oberwinkler, F., Parmasto, E., Reeb, V., Rogers, J.D., Roux, C., Ryvarden, L., Sampaio, J.P., Schüssler, A., Sugiyama, J., Thorn, R.G., Tibell, L., Untereiner, W.A., Walker, C., Wang, Z., Weir, A., Weiss, M., White, M.M., Winka, K., Yao, Y.J. & Zhang, N. (2007) A higher-level phylogenetic classification of the Fungi. Mycological Research 111: 509–547. https://doi.org/10.1016/j.mycres.2007.03.004
  20. Justo, A., Miettinen, O., Floudas, D., Ortiz-Santana, B., Sjökvist, E., Lindner, D., Nakasone, K., Niemelä, T., Larsson, K.H., Ryvarden, L. & Hibbett, D.S. (2017) A revised family-level classification of the Polyporales (Basidiomycota). Fungal Biology 121: 798–824. https://doi.org/10.1016/j.funbio.2017.05.010
  21. Katoh, K. & Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30 (4): 772–780. https://doi.org/10.1093/molbev/mst010
  22. Larsson, K.H. (2007) Re-thinking the classification of corticioid fungi. Mycological Progress 111: 1040–1063. https://doi.org/10.1016/j.mycres.2007.08.001
  23. Luo, K.Y. & Zhao, C.L. (2022) A molecular systematics and taxonomy research on Trechispora (Hydnodontaceae, Trechisporales): Concentrating on Three New Trechispora Species from East Asia. Journal of Fungi 8 (1020): 1–15. https://doi.org/10.3390/jof8101020
  24. Miettinen, O., Larsson, E., Sjökvist, E. & Larsson, K.H. (2012) Comprehensive taxon sampling reveals unaccounted diversity and morphological plasticity in a group of dimitic polypores (Polyporales, Basidiomycota). Cladistics 28: 251–270. https://doi.org/10.1111/j.1096-0031.2011.00380.x
  25. Núñez, M. & Ryvarden, L. (2001) East Asian polypores 2. Synopsis Fungorum 14: 165–522.
  26. Patouillard, N.T. (1900) Essai taxonomique sur les Familles et les Genres des Hyménomycètes. Lucien Declume Press, Lons-Le-Saunier, 184 pp. https://doi.org/10.5962/bhl.title.40287
  27. Posada, D. (2008) jModelTest: phylogenetic model averaging. Molecular Biology and Evolution 25 (7): 1253–1256. https://doi.org/10.1093/molbev/msn083
  28. Reid, D.A. (1965) A monograph of the stipitate stereoid fungi. Beihefte zur Nova Hedwigia 18: 1–382.
  29. Ronquist, F., Teslenko, M., Mark, P.V.D., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: Efficient Bayesian Phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539–542. https://doi.org/10.1093/sysbio/sys029
  30. Ryvarden, L. (1997) Podoscypha warneckii. Mycotaxon 64: 401–403. https://doi.org/10.1093/sysbio/sys029
  31. Ryvarden, L. (2015) Type studies in Stereum s.lato 5. Species described by M.J. Berkeley. Synopsis Fungorum 33: 13–19.
  32. Ryvarden, L. (2020) The genus Stereum a synopsis. Synopsis Fungorum 40: 46–96.
  33. Ryvarden, L. & Melo, I. (2014) Poroid fungi of Europe. Synopsis Fungorum 31: 1–455.
  34. Si, J., Zhang, Y.Z., Liang, J.Q. & Li, H.J. (2023) Morphology and phylogeny identify two new species and one new subspecies of Podoscypha from Yunnan Province, Southwest China. Frontiers in Microbiology 14: 1151365. https://doi.org/10.3389/fmicb.2023.1151365
  35. Sjökvist, E., Larsson, E., Eberhardt, U., Ryvarden, L. & Larsson, K.H. (2012) Stipitate stereoid basidiocarps have evolved multiple times. Mycologia 104: 1046–1055. https://doi.org/10.3852/11-174
  36. Swofford, D.L. (2002) PAUP: Phylogenetic Analysis Using Parsimony, Version 4.0 Beta 10. Sinauer Associates, Sunderland.
  37. Vu, D., Groenewald, M., de Vries, M., Gehrmann, T., Stielow, B., Eberhardt, U., Al-Hatmi, A., Groenewald, J.Z., Cardinali, G., Houbraken, J., Boekhout, T., Crous, P.W., Robert, V. & Verkley, G.J.M. (2019) Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. Studies in Mycology 92: 135–154. https://doi.org/10.1016/j.simyco.2018.05.001
  38. White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR Protocols: A guide to methods and applications. Academic Press, San Diego, pp. 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
  39. Wu, S.H. (2003) Lignicolous homobasidiomycetes newly recorded from Taiwan. Mycotaxon 88: 373–376.
  40. Wu, Y.X., Shen, S. & Zhao, C.L. (2019) Podoscypha yunnanensis sp. nov. (Polyporales, Basidiomycota) evidenced by morphological characters and phylogenetic analyses. Phytotaxa 387 (3): 210–218. https://doi.org/10.11646/phytotaxa.387.3.2
  41. Zhao, C.L., Chen, H., Song, J. & Cui, B.K. (2015) Phylogeny and taxonomy of the genus Abundisporus (Polyporales, Basidiomycota). Mycological Progress 14: 38. https://doi.org/10.1007/s11557-015-1062-y
  42. Zhao, C.L., Qu, M.H., Huang, R.X. & Karunarathna, S.C. (2023) Multi-gene phylogeny and taxonomy of the wood-rotting fungal genus Phlebia sensu lato (Polyporales, Basidiomycota). Journal of Fungi 9 (320): 1–41. https://doi.org/10.3390/jof9030320