Abstract
A novel species, Loculosulcatispora juglans, dwelling on twigs of the English walnut (Juglans regia), is introduced through a combination of phylogenetic analysis utilizing LSU, SSU, ITS, rpb2, and tef1-α sequence data, as well as morphological characteristics. Multi-locus phylogenetic analysis revealed that L. juglans forms a clade (MLBP/BYPP, 98%/0.95) together with L. hongheensis, L. thailandica, and Parasulcatispora clematidis. L. juglans distinguishes itself from phylogenetically similar species due to its unique characteristics, including exclusively 4-spored asci and larger ascospores encased in a thinner mucilaginous sheath.
References
- Chomnunti, P., Hongsanan, S., Hudson, B.A., Tian, Q., Peroh, D., Dhami, M.K., Alias, A.S., Xu, J., Liu, X., Stadler, M. & Hyde, K.D. (2014) The sooty moulds. Fungal Diversity 66: 1–36. https://doi.org/10.1007/s13225-014-0278-5
- Chen, S.F., Morgan, D.P., Hasey, J.K., Anderson, K. & Michailides, T.J. (2014) Phylogeny, morphology, distribution, and pathogenicity of Botryosphaeriaceae and Diaporthaceae from English walnut in California. Plant Disease 98: 636–652. https://doi.org/10.1094/PDIS-07-13-0706-RE
- Crous, P.W., Wingfield, M.J., Schumacher, R.K., Summerell, B.A., Giraldo, A., Gene, J., Guarro, J., Wanasinghe, D.N., Hyde, K.D., Camporesi, E., Jones, E.B.G., Thambugala, K.M., Malysheva, E.F., Malysheva, V.F., Acharya, K., Alvarez, J., Alvarado, P., Assefa, A., Barnes, C.W., Bartlett, J.S., Blanchette, R.A., Burgess, T.I., Carlavilla, J.R., Coetzee, M.P.A., Damm, U., Decock, C.A., Denbreeyen, A., Devries, B., Dutta, A.K., Holdom, D.G., Rooney-Latham, S., Manjon, J.L., Marincowitz, S., Mirabolfathy, M., Moreno, G., Nakashima, C., Papizadeh, M., Shahzadehfazeli, S.A., Amoozegar, M.A., Romberg, M.K., Shivas, R.G., Stalpers, J.A, Stielow, B., Stukely, M.J.C., Swart, W.J., Tan, Y.P., Vanderbank, M., Wood, A.R., Zhang, Y. & Groenewald, J.Z. (2014) Fungal Planet description sheets: 281–319. Persoonia 33: 212–289. https://doi.org/10.3767/003158514X685680
- Dai, D.Q., Phookamsak, R., Wijayawardene, N.N., Li, W.J., Bhat, D.J., Xu, J.C., Taylor, J.E., Hyde, K.D. & Chukeatirote, E. (2017) Bambusicolous fungi. Fungal Diversity 82: 1–105. https://doi.org/10.1007/s13225-016-0367-8
- de Silva, N.I., Thambugala, K.M., Tennakoon, D.S., Karunarathna, S.C., Kumla, J., Suwannarach, N. & Lumyong, S. (2022) Taxonomy and phylogenetic appraisal of dothideomycetous fungi associated with Magnolia, Lilium longiflorum and Hedychium coronarium. Journal of Fungi 8 (10): 1094. https://doi.org/10.3390/jof8101094
- Gomez-Brandon, M ., Probst, M., Siles, JA., Peintner, U ., Bardelli, T., Egli, M., Insam, H. & Ascher-Jenull. (2020) Fungal communities and their association with nitrogen-fixing bacteria affect early decomposition of Norway spruce deadwood. Scientific Reports 10, 8025. https://doi.org/10.1038/s41598-020-64808-5
- Hall, T. (2004) BioEdit.—Ibis Therapeutics, Carlsbad, CA, 92008, USA. [https://www.mbio.ncsu. edu/BioEdit/bioedit.html]
- Jayawardena, R.S., Hyde, K.D., Chen, Y.J., Papp, V., Palla, B., Papp, D., Bhunjun, C.S., Hurdeal, V.G., Senwanna, C., Manawasinghe, I.S., Harischandra, D.L., Gautam, A.K., Avasthi, S., Chuankid, B., Goonasekara, I.D., Hongsanan, S., Zeng, X., Liyanage, K.K., Liu, N., Karunarathna, A., Hapuarachchi, K.K., Luangharn, T., Raspé, O., Brahmanage, R., Doilom, M., Lee, H.B., Mei, L., Jeewon, R., Huanraluek, N., Chaiwan, N., Stadler, M. & Wang, Y. (2020) One stopshop IV: Taxonomic update with molecular phylogeny for important phytopathogenic genera: 76–100. Fungal Diversity 103: 87–218. https://doi.org/10.1007/s13225-020-00460-8
- Katoh, K., Rozewicki, J. & Yamada, K.D. (2019) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20: 1160–1166. https://doi.org/10.1093/bib/bbx108
- Liu, Y.J., Whelen, S. & Hall, B.D. (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Molecular Biology and Evolution 16: 1799–1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092
- Maddison, W.P. & Maddison, D.R. (2019) Mesquite: A modular system for evolutionary analysis, Version 3.61. [https://www.mesquiteproject.org/]
- Maharachchikumbura, S.S., Hyde, K.D., Gareth Jones, E.B., Mckenzie, E.H.C. & Huang, S.-K. (2015) Towards a natural classification and backbone tree for Sordariomycetes. Fungal Diversity 72: 199–301. https://doi.org/10.1007/s13225-015-0331-z
- Martínez-García, P.J., Crepeau, M.W., Puiu, D., Gonzalez-Ibeas, D., Whalen, J., Stevens, K.A., Paul, R., Butterfifield, T.S., Britton, M.T. & Reagan, R.L. (2016) The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of nonstructural polyphenols. The Plant Journal 5: 507–532. https://doi.org/10.1111/tpj.13207
- Miller, M.A., Pfeiffer, W.T. & Schwartz, T. (2010) Creating the CIPRES science gateway for inference of large phylogenetic tree. In: Proceedings of the Gateway Computing Environments Workshop (GCE), 14 November 2010, New Orleans. pp. 1–8. https://doi.org/10.1109/GCE.20
- Nylander, J.A.A., Wilgenbusch, J.C., Warren, D.L. & Swofford, D.L. (2008) AWTY: A system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24: 581–583. https://doi.org/10.1093/bioinformatics/btm388
- Phookamsak, R., Hyde, K.D., Jeewon, R., Bhat, D.J., Jones, E.B.G., Maharachchikumbura, S.S.N., Raspe, O., Karunarathna, S.C., Wanasinghe, D.N., Hongsanan, S., Doilom, M., Tennakoon, D.S., Machado, A.R., Firmino, A.L., Ghosh, A., Karunarathna, A., Mešić, A., Dutta, A.K., Thongbai, B., Devadatha, B., Norphanphoun, C., Senwanna, C., Wei, D.P., Pem, D., Ackah, F.K., Wang, G.N., Jiang, H.B., Madrid, H., Lee, h.b., Goonasekara, I.D., Manawasinghe, I.S., Kušan, I., Cano, J., Gene, j., Li, J.F., Das, K., Acharya, K., Raj, K.N.A., Latha, K.P.D., Chethana, K.W.T., He, M.Q., Dueñas, M., Jadan, M., Martín, M.P., Samarakoon, M.C., Dayarathne, M.C., Raza, M., Park, M.S., Telleria, M.T., Chaiwan, N., Matočec, N., de Silva, N.I., Pereira, O.L., Singh, P.N., Manimohan, P., Uniyal, P., Shang, Q.J., Bhatt, R.P., Perera, R.H., Alvarenga, R.L.M., Sandra, N.P., Singh, S.K., Vadthanarat, S., Oh, S.Y., Huang, S.K., Rana, S., Konta, S., Paloi, S., Jayasiri, S.C., Jeon, S.J., Mehmood, T., Gibertoni, T.B., Nguyen, T.T.T., Singh, U., Thiyagaraja, V., Sarma, V.V., Dong, W., Yu, X.D., Lu, Y.Z., Lim, Y.W., Chen, Y., Tkalčec, Z., Zhang, Z.F., Luo, Z.L., Daranagama, D.A., Thambugala, K.M., Tibpromma, S., Camporesi, E., Bulgakov, T.S., Dissanayake, A.J., Senanayake, I.C., Dai, D.Q., Tang, L.Z., Khan, S., Zhang, H., Promputtha, I., Cai, L., Chomnunti, P., Zhao, R.L., Lumyong, L., Boonmee, S., Wen, T.C., Mortimer, P.E. & Xu, J.C. (2019) Fungal diversity notes 929–1035: taxonomic and phylogenetic contributions on genera and species of fungi. Fungal Diversity 95: 1–273. https://doi.org/10.1007/s13225-019-00421-w
- Phukhamsakda, C., Bhat, D.J., Hongsanan, S., Tibpromma, S., Yang, J.B. & Promputtha, I. (2017) Magnicamarosporium diospyricola sp. nov. (Sulcatisporaceae) from Thailand. Mycosphere 8: 512–520. https://doi.org/10.5943/mycosphere/8/4/3
- Phukhamsakda, C., McKenzie, E.H., Phillips, A.J., Gareth Jones, E.B., Jayarama Bhat, D., Stadler, M. & Hyde, K.D. (2020) Microfungi associated with Clematis (Ranunculaceae) with an integrated approach to delimiting species boundaries. Fungal Diversity 102: 1–203. https://doi.org/10.1007/s13225-020-00448-4
- Rambaut, A. & Drummond, A. (2016) FigTree: Tree figure drawing tool, version 1.4.3. Available from: http://tree.bio.ed.ac.uk/software/figtree (accessed 18 Oct. 2023)
- Rehner, S.A. & Samuels, G.J. (1994) Taxonomy and phylogeny of Gliocladium analyzed from nuclear large subunit ribosomal DNA sequences. Mycological Research 98: 625–634. https://doi.org/10.1016/S0953-7562(09)80409-7
- Rehner, S.A. & Buckley, E. (2005) A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97: 84–98. https://doi.org/10.1080/15572536.2006.11832842
- Ren, G.C., Wanasinghe, D.N., Wei, D.P., Monkai, J., Yasanthika, E., Gui, H. & Hyde, K.D. (2020) Loculosulcatispora thailandica gen. et sp. nov. (Sulcatisporaceae), saprobic on woody litter in Thailand. Phytotaxa 475: 67–78. https://doi.org/10.11646/phytotaxa.475.2.1
- Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574. https://doi.org/10.1093/bioinformatics/btg180
- Rupcic, Z., Chepkirui, C., Hernández-Restrepo, M., Crous, P.W., Luangsa-Ard, J.J. & Stadler, M. (2018) New nematicidal and antimicrobial secondary metabolites from a new species in the new genus, Pseudobambusicola thailandica. MycoKeys (33): 1–23. https://doi.org/10.3897/mycokeys.33.23341
- Scotton, M., Bortolin, E., Fiorin, A. & Belisario, A. (2015) Environmental and pathogenic factors inducing brown apical necrosis on fruit of English (Persian) walnut. Phytopathology 105: 1427–1436. https://doi.org/10.1094/PHYTO-01-15-0029-R
- Stamatakis, A. (2014) RAxML Version 8: A tool for phylogenetic analysis and post analysis of large phylogenies. Bioinformatics 30: 1312–1313. https://doi.org/10.1093/bioinformatics/btu033
- Tanaka, K., Hirayama, K., Yonezawa, H., Sato, G., Toriyabe, A., Kudo, H., Hashimoto, A., Matsumura, M., Harada, Y., Kurihara, Y., Shirouzu, T. & Hosoya, T. (2015) Revision of the Massarineae (Pleosporales, Dothideomycetes). Studies in Mycology 82: 75–136. https://doi.org/10.1016/j.simyco.2015.10.002
- Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24: 4876–4882. https://doi.org/10.1093/nar/25.24.4876
- Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238–4246.
- Voglmayr, H., Castlebury, L.A. & Jaklitsch, W.M. (2017) Juglanconis gen. nov. on Juglandaceae, and the new family Juglanconidaceae (Diaporthales). Persoonia 38: 136–155. https://doi.org/10.1128/JB.172.8.4238-4246.1990
- Wanasinghe, D.N., Ren, G.C., Xu, J.C. & Mortimer, P.E. (2022) Insight into the Taxonomic Resolution of the Pleosporalean Species Associated with Dead Woody Litter in Natural Forests from Yunnan, China. Journal of Fungi 8 (4): 375. [https://www.mdpi.com/2309-608X/8/4/375]
- White, T.J., Bruns, T., Lee, S. & Taylor, J.W. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: a guide to methods and applications. Academic Press, San Diego, pp. 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Wijayawardene, N.N., Phillips, A.J.L., Dai, D.Q., Aptroot, A., Monteiro, J.S., Druzhinina, I.S., Cai, F., Fan, X.L., Selbmann, L., Coleine, C., Castaneda-Ruiz, R.F., Kukwa, M., Flakus, A., Fiuza, P.O., Kirk, P.M., Kumar, K.C.R., Arachchi, I.S.I., Suwannarach, N., Tang, L.Z., Boekhout, T., Tan, C.S, Jayasinghe, R.P.P.K. & Thines, M. (2022) Forecasting the number of species of asexually reproducing fungi (Ascomycota and Basidiomycota). Fungal Diversity 114: 463–490. https://doi.org/10.1007/s13225-022-00500-5
- Wijesinghe, S.N., Dayarathne, M.C., Maharachchikumbura, S.S., Wanasinghe, D.N. & Hyde, K.D. (2019) Ceramothyrium chiangraiense, a novel species of Chaetothyriales (Eurotiomycetes) from Ficus sp. in Thailand. Asian Journal of Mycology 2: 269–280. https://doi.org/10.5943/ajom/2/1/17
- Xu, X.L., Wang, F.H., Liu, C., Yang, H.B., Zeng, Z., Wang, B.X., Liu, Y.G. & Yang, C.L. (2022) Morphology and phylogeny of ascomycetes associated with walnut trees (Juglans regia) in Sichuan province, China. Frontiers in Microbiology 13: 1016548. https://doi.org/10.3389/fmicb.2022.1016548
- Zeng, Q., Lv, Y.-C., Xu, X.-L., Deng, Y., Wang, F.-H., Liu, S.-Y., Liu, L.-J., Yang, C.-L. & Li, Y.-G. (2022) Morpho-molecular characterization of microfungi associated with Phyllostachys (poaceae) in Sichuan. China. Journal of Fungi 8 (7): 702. https://doi.org/10.3390/jof8070702