Abstract
Madisonia has been delimited recently based on DNA analyses and morphological characters. In this article, we focus on Specklinia ordinata (Pleurothallidinae), a poorly known species. We obtained DNA data for this taxon and demonstrated that it is clearly a member of Madisonia. This species also shares morphological characters with Madisonia, in which we propose to include it.
References
Aiton, W.T. (1813) Hortus Kewensis, 2nd edition, volume 5. Longman, Hurst, Rees, Orme, and Brown, London, 568 pp.
Barbosa Rodrigues, J. (1877) Genera et species orchidearum novarum, vol. 1. Fleiuss, Rio de Janeiro, 209 pp. https://doi.org/10.5962/bhl.title.585
Bogarin, D., Pérez-Escobar, O.A., Groenenberg, D., Holland, S.D., Karremans, A.P., Lemmon, E.M., Pupulin, F., Smets, E. & Grevendeel, B. (2018) Anchored hybrid enrichment generated nuclear, plastid and mitochondrial markers resolve the Lepanthes horrida (Orchidaceae: Pleurothallidinae) species complex. Molecular Phylogenetics and Evolution 129: 27–47. https://doi.org/10.1016/j.ympev.2018.07.014
Braga, P.I.S. (1981) Orquídeas das campinas da Amazônia brasileira - novas ocorrências para o Brasil e taxa novas para a ciência. Bradea 3: 170–173.
Chumová, Z., Záveská, E., Hloušková, P., Ponert, J., Schmidt, P.-A., ?ertner, M., Mandáková, T. & Trávní?ek, P. (2021) Repeat proliferation and partial endoreplication jointly shape the patterns of genome size evolution in orchids. The Plant Journal 107: 511–524. https://doi.org/10.1111/tpj.15306
Darriba, D., Taboada, G., Doallo, R. & Posada D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9: 772. https://doi.org/10.1038/nmeth.2109
Goldman, D.H., Freudenstein J.V., Kores, P.J., Molvray, M., Jarrell, D.C., Whitten, W.M., Cameron, K.M., Jansen, R.K. & Chase, M.W. (2001) Phylogenetics of Arethuseae (Orchidaceae) based on plastid matK and rbcL sequences. Systematic Botany 26: 670–695. https://doi.org/10.1043/0363-6445-26.3.670
Hsiao, C., Chatterton, N., Asay, K. & Jensen, K. (1995) Molecular phylogeny of the Pooideae (Poaceae) based on nuclear rDNA (ITS) sequences. Theoretical and Applied Genetics 90: 389–398.
Huelsenbeck, J.P. & Ronquist, F. (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754–755. https://doi.org/10.1093/bioinformatics/17.8.754
Karremans, A.P. (2016) Genera pleurothallidinarum: an updated phylogenetic overview of Pleurothallidinae. Lankesteriana 16: 219–241. https://doi.org/10.15517/lank.v16i2.26008
Karremans, A.P., Albertazzi, F.J., Bakker, F.T., Bogarín, D., Eurlings, M.C.M., Pridgeon, A., Pupulin, F. & Gravendeel, B. (2016) Phylogenetic reassessment of Specklinia and its allied genera in the Pleurothallidinae (Orchidaceae). Phytotaxa 272 (1): 1–36. https://doi.org/10.11646/phytotaxa.272.1.1
Karremans, A.P. & Vieira-Uribe, S. (2020) Pleurothallids: Neotropical jewels, vol. I. Mariscal, Quito, 311 pp.
Katoh, K. & Standley, D.M. (2013) MAFFT Multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772–780. https://doi.org/10.1093/molbev/mst010
Kozlov A. M., Darriba D., Flouri T., Morel B. & Stamatakis A. (2019) RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics 35: 4453–4455. https://doi.org/10.1093/bioinformatics/btz305
Larsson, A (2014) AliView: a fast and lightweight alignment viewer and editor for large datasets. Bioinformatics 30: 3276–3278. https://doi.org/10.1093/bioinformatics/btu531
Lindley, J. (1830) The genera and species of orchidaceous plants, vol. 8. Asher, London, xvii, 554 pp.
Lindley, J. (1859) Pleurothallis. Folia orchidacea, vol 1, part 9. Matthews, London, pp. 1–46.
Liu, Z.J., Chen, L.J., Chen, S.C., Cai, J., Tsai, W.C., Hsiao, Y.Y., Rao, W.H., Ma, X.Y. & Zhang G.Q. (2011) Paraholcoglossum and Tsiorchis, two new orchid genera established by molecular and morphological analyses of the Holcoglossum alliance. PLoS ONE 6: e24864. https://doi.org/10.1371/journal.pone.0024864
Luer, C.A. (1986) Icones pleurothallidinarum I. Systematics of the Pleurothallidinae. Monographs in Systematic Botany from the Missouri Botanical Garden 15: 1–81.
Luer, C.A. (2004) Icones pleurothallidinarum XXVI. Pleurothallis subgenus Acianthera and three allied subgenera. A second century of new species of Stelis of Ecuador. Epibator, Ophidion, Zootrophion. Addenda to Brachionidium, Dracula, Lepanthes, Platystele, Pleurothallis, Porroglossum, and Masdevallia. New genera and combinations. Monographs in Systematic Botany from the Missouri Botanical Garden 95: 1–265.
Luer, C.A. (2006) Icones pleurothallidinarum XXVIII. A reconsideration of Masdevallia, systematics of Specklinia and vegetatively similar taxa (Orchidaceae). Monographs in Systematic Botany from the Missouri Botanical Garden 105: 1–281.
Luer, C.A. (2009) Icones pleurothallidinarum XXX: Lepanthes of Jamaica. Systematics of Stelis: Stelis of Ecuador, Part four. Addenda: Systematics of Masdevallia, New Species of Lepanthes from Ecuador, and miscellaneous new combinations. Monographs in Systematic Botany from the Missouri Botanical Garden 115: 1–265.
Pfahl, J. (2013) The internet orchid species photo encyclopedia nomenclature notes December 16 2013. Internet Orchid Species Photo Encyclopedia Nomenclature Notes 2: 1. Available from: http://www.orchidspecies.com/nomenclature.htm (accessed 2 December 2023)
Pridgeon, A.M. & Chase, M.W. (2001) A phylogenetic reclassification of Pleurothallidinae (Orchidaceae). Lindleyana 16: 235–271.
Sang, T., Crawford, D.J. & Stuessy, T.F. (1997) Chloroplast DNA phylogeny, reticulate evolution and biogeography of Paeonia (Paeoniaceae). American Journal of Botany 84: 1120–1136. https://doi.org/10.2307/2446155
Shaw, J., Lickey, E.B., Schilling, E.E. & Small, R.L. (2007) Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. American Journal of Botany 94: 275–288. https://doi.org/10.3732/ajb.94.3.275
Smidt E.C., Toscano de Brito A.L.V., Maud A.V.S.R. & Morales N.G. (2021) An expanded concept of Madisonia including miscellaneous species of Pleurothallidinae (Orchidaceae): evidence from molecular analysis. Phytotaxa 505 (1): 71–84. https://doi.org/10.11646/phytotaxa.505.1.5
Štorchová, H., Hrdli?ková, R., Chrtek, J., Tetera, M., Fitze, D. & Fehrer, J. (2000) An improved method of DNA isolation from plants collected in the field and conserved in saturated NaCl/CTAB solution. Taxon 49: 79–84. https://doi.org/10.2307/1223934
Tate, J.A. (2002) Systematics and evolution of Tarasa Philippi (Malvaceae): an enigmatic Andean polyploid genus. PhD thesis. The University of Texas, Austin.
Trávní?ek, P., Chumová, Z., Záveská, E., Hanzlí?ková, J., Kupková, L., Ku?era, J., Gbúrová Štub?ová, E., Rejlová, L., Mandáková, T. & Ponert, J. (2021) Integrative study of genotypic and phenotypic diversity in the Eurasian orchid genus Neotinea. Frontiers in Plant Sciences 12: 734240. https://doi.org/10.3389/fpls.2021.734240
Barbosa Rodrigues, J. (1877) Genera et species orchidearum novarum, vol. 1. Fleiuss, Rio de Janeiro, 209 pp. https://doi.org/10.5962/bhl.title.585
Bogarin, D., Pérez-Escobar, O.A., Groenenberg, D., Holland, S.D., Karremans, A.P., Lemmon, E.M., Pupulin, F., Smets, E. & Grevendeel, B. (2018) Anchored hybrid enrichment generated nuclear, plastid and mitochondrial markers resolve the Lepanthes horrida (Orchidaceae: Pleurothallidinae) species complex. Molecular Phylogenetics and Evolution 129: 27–47. https://doi.org/10.1016/j.ympev.2018.07.014
Braga, P.I.S. (1981) Orquídeas das campinas da Amazônia brasileira - novas ocorrências para o Brasil e taxa novas para a ciência. Bradea 3: 170–173.
Chumová, Z., Záveská, E., Hloušková, P., Ponert, J., Schmidt, P.-A., ?ertner, M., Mandáková, T. & Trávní?ek, P. (2021) Repeat proliferation and partial endoreplication jointly shape the patterns of genome size evolution in orchids. The Plant Journal 107: 511–524. https://doi.org/10.1111/tpj.15306
Darriba, D., Taboada, G., Doallo, R. & Posada D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9: 772. https://doi.org/10.1038/nmeth.2109
Goldman, D.H., Freudenstein J.V., Kores, P.J., Molvray, M., Jarrell, D.C., Whitten, W.M., Cameron, K.M., Jansen, R.K. & Chase, M.W. (2001) Phylogenetics of Arethuseae (Orchidaceae) based on plastid matK and rbcL sequences. Systematic Botany 26: 670–695. https://doi.org/10.1043/0363-6445-26.3.670
Hsiao, C., Chatterton, N., Asay, K. & Jensen, K. (1995) Molecular phylogeny of the Pooideae (Poaceae) based on nuclear rDNA (ITS) sequences. Theoretical and Applied Genetics 90: 389–398.
Huelsenbeck, J.P. & Ronquist, F. (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754–755. https://doi.org/10.1093/bioinformatics/17.8.754
Karremans, A.P. (2016) Genera pleurothallidinarum: an updated phylogenetic overview of Pleurothallidinae. Lankesteriana 16: 219–241. https://doi.org/10.15517/lank.v16i2.26008
Karremans, A.P., Albertazzi, F.J., Bakker, F.T., Bogarín, D., Eurlings, M.C.M., Pridgeon, A., Pupulin, F. & Gravendeel, B. (2016) Phylogenetic reassessment of Specklinia and its allied genera in the Pleurothallidinae (Orchidaceae). Phytotaxa 272 (1): 1–36. https://doi.org/10.11646/phytotaxa.272.1.1
Karremans, A.P. & Vieira-Uribe, S. (2020) Pleurothallids: Neotropical jewels, vol. I. Mariscal, Quito, 311 pp.
Katoh, K. & Standley, D.M. (2013) MAFFT Multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772–780. https://doi.org/10.1093/molbev/mst010
Kozlov A. M., Darriba D., Flouri T., Morel B. & Stamatakis A. (2019) RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics 35: 4453–4455. https://doi.org/10.1093/bioinformatics/btz305
Larsson, A (2014) AliView: a fast and lightweight alignment viewer and editor for large datasets. Bioinformatics 30: 3276–3278. https://doi.org/10.1093/bioinformatics/btu531
Lindley, J. (1830) The genera and species of orchidaceous plants, vol. 8. Asher, London, xvii, 554 pp.
Lindley, J. (1859) Pleurothallis. Folia orchidacea, vol 1, part 9. Matthews, London, pp. 1–46.
Liu, Z.J., Chen, L.J., Chen, S.C., Cai, J., Tsai, W.C., Hsiao, Y.Y., Rao, W.H., Ma, X.Y. & Zhang G.Q. (2011) Paraholcoglossum and Tsiorchis, two new orchid genera established by molecular and morphological analyses of the Holcoglossum alliance. PLoS ONE 6: e24864. https://doi.org/10.1371/journal.pone.0024864
Luer, C.A. (1986) Icones pleurothallidinarum I. Systematics of the Pleurothallidinae. Monographs in Systematic Botany from the Missouri Botanical Garden 15: 1–81.
Luer, C.A. (2004) Icones pleurothallidinarum XXVI. Pleurothallis subgenus Acianthera and three allied subgenera. A second century of new species of Stelis of Ecuador. Epibator, Ophidion, Zootrophion. Addenda to Brachionidium, Dracula, Lepanthes, Platystele, Pleurothallis, Porroglossum, and Masdevallia. New genera and combinations. Monographs in Systematic Botany from the Missouri Botanical Garden 95: 1–265.
Luer, C.A. (2006) Icones pleurothallidinarum XXVIII. A reconsideration of Masdevallia, systematics of Specklinia and vegetatively similar taxa (Orchidaceae). Monographs in Systematic Botany from the Missouri Botanical Garden 105: 1–281.
Luer, C.A. (2009) Icones pleurothallidinarum XXX: Lepanthes of Jamaica. Systematics of Stelis: Stelis of Ecuador, Part four. Addenda: Systematics of Masdevallia, New Species of Lepanthes from Ecuador, and miscellaneous new combinations. Monographs in Systematic Botany from the Missouri Botanical Garden 115: 1–265.
Pfahl, J. (2013) The internet orchid species photo encyclopedia nomenclature notes December 16 2013. Internet Orchid Species Photo Encyclopedia Nomenclature Notes 2: 1. Available from: http://www.orchidspecies.com/nomenclature.htm (accessed 2 December 2023)
Pridgeon, A.M. & Chase, M.W. (2001) A phylogenetic reclassification of Pleurothallidinae (Orchidaceae). Lindleyana 16: 235–271.
Sang, T., Crawford, D.J. & Stuessy, T.F. (1997) Chloroplast DNA phylogeny, reticulate evolution and biogeography of Paeonia (Paeoniaceae). American Journal of Botany 84: 1120–1136. https://doi.org/10.2307/2446155
Shaw, J., Lickey, E.B., Schilling, E.E. & Small, R.L. (2007) Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. American Journal of Botany 94: 275–288. https://doi.org/10.3732/ajb.94.3.275
Smidt E.C., Toscano de Brito A.L.V., Maud A.V.S.R. & Morales N.G. (2021) An expanded concept of Madisonia including miscellaneous species of Pleurothallidinae (Orchidaceae): evidence from molecular analysis. Phytotaxa 505 (1): 71–84. https://doi.org/10.11646/phytotaxa.505.1.5
Štorchová, H., Hrdli?ková, R., Chrtek, J., Tetera, M., Fitze, D. & Fehrer, J. (2000) An improved method of DNA isolation from plants collected in the field and conserved in saturated NaCl/CTAB solution. Taxon 49: 79–84. https://doi.org/10.2307/1223934
Tate, J.A. (2002) Systematics and evolution of Tarasa Philippi (Malvaceae): an enigmatic Andean polyploid genus. PhD thesis. The University of Texas, Austin.
Trávní?ek, P., Chumová, Z., Záveská, E., Hanzlí?ková, J., Kupková, L., Ku?era, J., Gbúrová Štub?ová, E., Rejlová, L., Mandáková, T. & Ponert, J. (2021) Integrative study of genotypic and phenotypic diversity in the Eurasian orchid genus Neotinea. Frontiers in Plant Sciences 12: 734240. https://doi.org/10.3389/fpls.2021.734240