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Type: Article
Published: 2022-08-04
Page range: 149-159
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Parathyridaria ephedrae sp. nov. (Thyridariacaeae, Pleosporales), endophytic to Ephedra gerardiana in India

Department of Botany, University of Jammu, Jammu, J&K, India-180006.
Department of Botany, University of Jammu, Jammu, J&K, India-180006.
1 novel taxon cold desert endophyte Indian mycobiota taxonomy Fungi

Abstract

A novel endophyte, Parathyridaria ephedrae sp. nov. (Thyridariaceae) was isolated from the stem of Ephedra gerardiana growing in Kargil district of Union territory Ladakh, India. Detailed micromorphological investigations revealed that this isolate differs from previously described Parathyridaria species by having 1–3 wart-like prominent papillae, a larger ostiolar canal, thicker conidiomatal wall with more layers of textura angularis, and larger conidia. Phylogenetic analyses based on concatenated sequence datasets of internal transcribed spacer (ITS) regions and large subunit (LSU) of nuclear ribosomal DNA (nrDNA) strongly supported the morphological outcome and confirmed the novelty of the taxon. Detailed description, illustrations, and phylogenetic results of the novel species are presented and discussed.

References

<p>Ahmed, S.A., Stevens, D.A., van de Sande, W.W.J., Meis, J.F. &amp; de Hoog, G.S. (2014) <em>Roussoella percutanea</em>, a novel opportunistic pathogen causing subcutaneous mycoses. <em>Medical Mycology</em> 52: 689–698. https://doi.org/10.1093/mmy/myu035</p>
<p>Crous, P.W., Shivas, R.G., Quaedvlieg, W., van der Bank, M., Zhang, Y., Summerell, B.A., Summerell, B.A., Guarro, J., Wingfield, M.J., Wood, A.R., Alfenas, A.C., Braun, U., Cano-Lira, J.F., García, D., Marin-Felix, Y., Alvarado, P., Andrade, J.P., Armengol, J., Assefa, A., den Breeÿen, A., Camele, I., Cheewangkoon, R., De Souza, J.T., Duong, T.A., Esteve-Raventós, F., Fournier, J., Frisullo, S., García-Jiménez, J., Gardiennet, A., Gené, J., Hernández-Restrepo, M., Hirooka, Y., Hospenthal, D.R., King, A., Lechat, C., Lombard, L., Mang, S.M., Marbach, P.A.S., Marincowitz, S., Marin-Felix, Y., Montaño-Mata, N.J., Moreno, G., Perez, C.A., Pérez Sierra, A.M., Robertson, J.L., Roux, J., Rubio, E., Schumacher, R.K., Stchigel, A.M., Sutton, D.A., Tan, Y.P., Thompson, E.H., Vanderlinde, E., Walker, A.K., Walker, D.M., Wickes, B.L., Wong, P.T.W. &amp; Groenewald, J.Z. (2014) Fungal Planet description sheets: 214–280. <em>Persoonia</em> 32: 184–306.&nbsp; https://doi.org/10.3767/003158514X682395</p>
<p>Crous, P.W., Carris, L.M., Giraldo, A., Groenewald, J.Z., Hawksworth, D.L., Hernández-Restrepo, M., Jaklitsch, W.M., Lebrun, M.H., Schumacher, R.K., Stielow, J.B., van der Linde, E.J., Vilcâne, J., Voglmayr, H. &amp; Wood, A.R. (2015) The genera of Fungi – fixing the application of the type species of generic names – G 2: <em>Allantophomopsis</em>, <em>Latorua</em>, <em>Macrodiplodiopsis</em>, <em>Macrohilum</em>, <em>Milospium</em>, <em>Protostegia</em>, <em>Pyricularia</em>, <em>Robillarda</em>, <em>Rotula</em>, <em>Septoriella</em>, <em>Torula</em>, and <em>Wojnowicia</em>. <em>IMA Fungus</em> 6: 163–198.&nbsp; https://doi.org/10.5598/imafungus.2015.06.01.11</p>
<p>Crous, P.W., Schumacher, R.K., Wingfield, M.J., Akulov, A., Denman, S., Roux, J., Braun, U., Burgess, T.I., Carnegie, A.J., Váczy, K.Z., Guatimosim, E., Schwartsburd, P.B., Barreto, R.W., Hernández-Restrepo, M., Lombard, L. &amp; Groenewald, J.Z. (2018) New and interesting fungi. <em>Fungal Systematics and Evolution</em> 1: 169–216.&nbsp; https://doi.org/10.3114/fuse.2018.01.08</p>
<p>Das, K., Lee, S. Y. &amp; Jung, H.Y. (2020) Morphology and phylogeny of two novel species within the class Dothideomycetes collected from soil in Korea. <em>Mycobiology</em> 49 (1): 15–23.&nbsp; https://doi.org/10.1080/12298093.2020.1838114</p>
<p>Devadatha, B., Sarma, V.V., Jeewon, R., Wanasinghe, D.N., Hyde, K.D. &amp; Gareth Jones, E.B. (2018) <em>Thyridariella</em>, a novel marine fungal genus from India: morphological characterization and phylogeny inferred from multigene DNA sequence analyses. <em>Mycological Progress</em> 17 (7): 791–804. https://doi.org/10.1007/s11557-018-1387-4</p>
<p>Gnavi, G., Ercole, E., Panno, L., Vizzini, A. &amp; Varese, G.C. (2014) Dothideomycetes and Leotiomycetes sterile mycelia isolated from the Italian seagrass <em>Posidonia oceanica</em> based on rDNA data. <em>SpringerPlus</em> 3: 508.&nbsp; https://doi.org/10.1186/2193-1801-3-508</p>
<p>Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. <em>Nucleic</em> <em>Acids Symposium Series </em>41: 95–98.</p>
<p>Hongsanan, S., Hyde, K.D., Phookamsak, R., Wanasinghe, D.N., McKenzie, E.H.C., Sarma, V.V., Boonmee, S., Lücking, R., Bhat, J.D., Liu, N., Tennakoon, D.S., Pem, D., Karunarathna, A., Jiang, S.H., Jones, E.B.G., Phillips, A.J.L., Manawasinghe, I., Tibpromma, S., Jayasiri, S.C., Sandamali, D., Jayawardena, R.S., Wijayawardene, N.N., Ekanayaka, A.H., Jeewon, R., Lu, Y.Z., Dissanayake, A.J., Zeng, X.Y., Luo, Z.L., Tian, Q., Phukhamsakda, C., Thambugala, K.M., Dai, D.Q., Chethana, T.K.W., Samarakoon, M.C., Ertz, D., Doilom, M., Liu, J.K., Pérez-Ortega, S., Suija, A., Senwanna, C., Wijesinghe, S.N., Konta, S., Niranjan, M., Zhang, S.N., Ariyawansa, H.A., Jiang, H.B., Zhang, J.F., Norphanphoun, C., de Silva, N.I., Thiyagaraja, V., Zhang, H., Bezerra, J.D.P., Miranda- González, R., Aptroot, A., Kashiwadani, H., Harishchandra, D., Sérusiaux, E., Aluthmuhandiram, J.V.S., Abeywickrama, P.D., Bao, D.F., Devadatha, B., Wu, H.X., Moon, K.H., Gueidan, C., Schumm, F., Bundhun, D., Mapook, A., Monkai, J., Chomnunti, P., Suetrong, S., Chaiwan, N., Dayarathne, M.C., Jing, Y., Rathnayaka, A.R., Bhunjun, C.S., Xu, J.C., Zheng, J.S., Liu, G., Feng, Y. &amp; Xie, N. (2020) Refined families of Dothideomycetes: Dothideomycetidae and Pleosporomycetidae. <em>Mycosphere </em>11: 1553–2107. https://doi.org/10.5943/mycosphere/11/1/13</p>
<p>Hyde, K.D., Jones, E.B.G., Liu, J.K., Ariyawansa, H.A., Boehm, E., Boonmee, S., Braun, U., Chomnunti, P., Crous, P.W., Dai, D.Q., Diederich, P., Dissanayake, A.J., Doilom, M., Doveri, F., Hongsanan, S., Jayawardena, R., Lawrey, J.D., Li, Y.M., Liu, Y.X., Lücking, R., Monkai, J., Muggia, L., Nelsen, M.P., Pang, K.L., Phookamsak, R., Senanayake, I., Shearer, C.A., Seutrong, S., Tanaka, K., Thambugala, K.M, Wijayawardene, D.N.N., Wikee, S., Wu, H.X., Zhang, Y., Aguirre-Hudson, B., Alias, S.A., Aptroot, A., Bahkali, A.H., Bezerra, J.L., Bhat, J.D., Camporesi, E., Chukeatirote, E., Gueidan, C., Hawksworth, D.L., Hirayama, K., De Hoog, S., Kang, J.C., Knudsen, K., Li, W.J., Li, X., Liu, Z.Y., Mapook, A., McKenzie, E.H.C., Miller, A.N., Mortimer, P.E., Phillips, A.J.L., Raja, H.A., Scheuer, C., Schumm, F., Taylor, J.E., Tian, Q., Tibpromma, S., Wanasinghe, D.N., Wang, Y., Xu, J., Yan, J., Yacharoen, S. &amp; Zhang, M. (2013) Families of Dothideomycetes. <em>Fungal Diversity</em> 63: 1–313. http://dx.doi.org/10.1007/s13225-013-0263-4</p>
<p>Hyde, K.D., Chaiwan, N., Norphanphoun, C., Boonmee, S., Camporesi, E., Chethana, K.W.T., Dayarathne, M.C., de Silva, N.I., Dissanayake, A.J., Ekanayaka, A.H., Hongsanan, S., Huang, S.K., Jayasiri, S.C., Jayawardena, R., Jiang, H.B., Karunarathna, A., Lin, C.G., Liu, J.K., Liu, N.G., Lu, Y.Z., Luo, Z.L., Maharachchimbura, S.S.N., Manawasinghe, I.S., Pem, D., Perera, R.H., Phukhamsakda, C., Samarakoon, M.C., Senwanna, C., Shang, Q.J., Tennakoon, D.S., Thambugala, K.M., Tibpromma, S., Wanasinghe, D.N., Xiao, Y.P., Yang, J., Zeng, X.Y., Zhang, J.F., Zhang, S.N., Bulgakov, T.S., Bhat, D.J., Cheewangkoon, R., Goh, T.K., Jones, E.B.G., Kang, J.C., Jeewon, R., Liu, Z.Y., Lumyong, S., Kuo, C.H., McKenzie, E.H.C., Wen, T.C., Yan, J.Y. &amp; Zhao, Q. (2018) Mycosphere notes 169–224. <em>Mycosphere </em>9: 271–430. https://doi.org/10.5943/mycosphere/9/2/8</p>
<p>Jaklitsch, W.M. &amp; Voglmayer, H. (2016) Hidden diversity in <em>Thyridaria </em>and a new circumscription of the Thyridariaceae. <em>Studies in Mycology </em>85: 35–64. https://doi.org/10.1016/j.simyco.2016.09.002</p>
<p>Jayasiri, S.C., Hyde, K.D., Jones, E.B.G., McKenzie, E.H.C., Jeewon, R., Phillips, A.J.L., Bhat, D.J., Wanasinghe, D.N., Liu, J.K., Lu, Y.Z., Kang, J.C., Xu, J. &amp; Karunarathna, S.C. (2019) Diversity, morphology and molecular phylogeny of Dothideomycetes on decaying wild seed pods and fruits. <em>Mycosphere</em> 10: 1–186.</p>
<p>Jiang, H.B., Hyde, K.D., Jayawardene, R.S., Doilom, M., Xu, J.C. &amp; Phookamsak, R. (2019) Taxonomic and phylogenetic characterizations reveal two new species and two new records of <em>Roussoella </em>(Roussoellaceae, Pleosporales) from Yunnan, China. <em>Mycological Progress </em>18: 577–591. https://doi.org/10.1007/s11557-019-01471-9</p>
<p>Katoh, K., Rozewicki, J. &amp; Yamada, K.D. (2019) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. <em>Briefings in Bioinformatics </em>20: 1160–1166. https://doi.org/10.1093/bib/bbx108</p>
<p>Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. <em>Journal of Molecular Evolution</em> 16 (2): 111–120.&nbsp; https://doi.org/10.1007/BF01731581</p>
<p>Liu, J.K., Phookamsak, R., Dai, D.Q., Tanaka, K., Jones, E.B.G., Xu, J.C., Chukeatirote, E. &amp; Hyde, K.D. (2014) Roussoellaceae, a new pleosporalean family to accommodate the genera <em>Neoroussoella </em>gen. nov., <em>Roussoella </em>and <em>Roussoellopsis</em>. <em>Phytotaxa </em>181 (1): 1–33.&nbsp; https://doi.org/10.11646/phytotaxa.181.1.1</p>
<p>Mapook, A., Hyde, K.D., McKenzie, E.H.C., Jones, E.B.G., Bhat, D.J., Jeewon, R., Stadler, M., Samarakoon, M.C., Malaithong, M., Tanunchai, B. &amp; Buscot, F. (2020) Taxonomic and phylogenetic contributions to fungi associated with the invasive weed <em>Chromolaena odorata </em>(Siam weed). <em>Fungal Diversity</em> 101: 1–175.&nbsp; https://doi.org/10.1007/s13225-020-00444-8</p>
<p>Petrini, O. (1986) Taxonomy of endophytic fungi of aerial plant tissues. <em>In</em>: Fokkema, N.J. &amp; Van den Heuvel, J. (Eds.) <em>Microbiology of the Phyllosphere.</em> Cambridge University Press, pp. 175–187.</p>
<p>Phookamsak, R., Hyde, K.D., Jeewon, R., Bhat, D.J., Jones, E.B.G., Maharachchikumbura, S.S.N., Raspé, O., Karunarathna, S.C., Wanasinghe, D.N., Hongsanan, S., Doilom, M., Tennakoon, D.S., Machado, A.R., Firmino, A.L., Ghosh, A., Karunarathna, A., Mesic, A., Dutta, A.K., Thongbai, B., Devadatha, B., Norphanphoun, C., Senwanna, C., Wei, D., Pem, D., Achah, F.K., Wang, G.N., Jiang, H.B., Madrid., H., Lee, H.B., Goonasekara, I.D., Manawasinghe, I.S., Kusan, I., Cano, J., Gene, J., Li, J.F., Das, K., Acharya, K., Raj, K.N.A., Latha, K.P.D., Chethana, K.W.T., He, M.Q., Duenas, M., Jadan, M., Martin, M.P., Samarakoon, M.C., Dayaratne, M.C., Raza, M., Park, M.S., Tellaria, M.T., Chaiwan, N., Matocec, N., de Silva, N.I., Pereira, O.L., Singh, S.K., Vadthanarat, S., Oh, S.Y., Huang, S.K., Rana, S., Konta, S., Paloi, S., Jayasiri, S.C., Jeon, S.J., Mehmood, T., Gibertoni, T.B., Nguyenm, T.T.T., Singhe, U., Thiyagaraja, V., Sharma, V.V., Dong, W., Yu, X.D., Lu, Y.Z., Lim, Y.W., Chen, Y., Tkalcec, Z., Zhang, Z.F., Lou, Z.L., Daranagama, D.A., Thambugala, K.M., Tibpromma, S., Camporesi, E., Bulgokov, T.B., Dissanayake, A.J., Senanayake, I.C., Dai, D.Q., Tang., L.Z., Khan, S., Zhang, H., Promputta, I., Cai, L., Chomnuti, P., Zhao, R.L., Lumyong, S., Boonmee, S., Wen, T.C., Mortimer, P.E. &amp; Xu, J.C. (2019) Fungal diversity notes 929–1035: taxonomic and phylogenetic contributions on genera and species of fungal taxa. <em>Fungal Diversity </em>95: 1–273.&nbsp; https://doi.org/10.1007/s13225-019-00421-w</p>
<p>Phukhamsakda, C., McKenzie, E.H.C., Phillips, A.J.L., Jones, E.B.G., Bhat, D.J., Stadler, M., Bhunjun, C.S., Wanasinghe, D.N., Thongbai, B., Camporesi, E., Jayawardena, R.S., Perera, R.H., Ekanayake, A.H., Tibpromma, S., Doilom, M., Xu, J.C. &amp; Hyde, K.D. (2020) Study of fungi associated with <em>Clematis</em> L. (Ranunculaceae) and integrated approach to delimiting species boundaries. <em>Fungal Diversity</em> 102: 1–203.&nbsp; https://doi.org/10.1007/s13225-020-00448-4</p>
<p>Poli, A., Bovio, E., Ranieri, L., Varese, G.C. &amp; Prigione, V. (2020) News from the sea: a new genus and seven new species in the Pleosporalean families Roussoellaceae and Thyridariaceae. <em>Diversity </em>12: 144. https://doi.org/10.3390/d12040144</p>
<p>Rudramurthy, S.M., Paul, R.A., Chakrabarti, A., Mouton, J.W. &amp; Meis, J.F. (2019) Invasive aspergillosis by <em>Aspergillus flavus</em>: epidemiology, diagnosis, antifungal resistance, and management. <em>Journal of Fungi </em>5 (3): 55.&nbsp; https://doi.org/10.3390/jof5030055</p>
<p>Tibpromma, S., Hyde, K.D., Jeewon, R., Maharachchikumbura, S.S.N., Liu, J.K., Bhat, D.J., McKenzie, E.H.C, Jones, E.B.G., Camporesi, E., Bulgakov, T.S., Doilom, M., de Azevedo Santiago, A.L.C.M., Das, K., Manimohan, P., Gibertoni, T.B., Lim, Y.W., Ekanayaka, A.H., Thongbai, B., Lee, H.B., Yang, J.B., Kirk, P.M., Sysouphanthong, P., Singh, S.K., Boonmee, S., Dong, W., Raj, K.N.A., Latha, K.P.D., Phookamsak, R., Phukhamsakda, C., Tennakoon, D.S., Li, J.F., Dayarathne, M.J., Perera, R.H., Xiao, Y., Wanasinghe, D.N., Senanayake, I.C., Goonasekara, I.D., de Silva, N.I., Mapook, A., Jayawardena, R.S., Dissanayake, A.J., Manawasinghe, I.S., Chethana, K.W.T., Luo, Z.L., Hapuarachchi, K.K., Baghela, A., Soares, A.M., Vizzini, A., Meiras-Ottoni, A., Mesic, A., Dutta, A.K., de Souza, C.A.F., Richter, C., Lin, C.G., Chakrabarty, D., Daranagama, D.A., Lima, D.X., Chakraborty, D., Ercole, E., Wu, F., Simonini, G., Vasquez, G., da Silva, G.A., Plautz, Jr. H.L.P., Ariyawansa, H.A., Lee, H., Kusan, I., Song, J., Sun, J., Karmakar, J., Hu, K., Semwal, K.C., Thambugala, K.M., Voigt, K., Acharya, K., Rajeshkumar, K.C., Ryvarden, L., Jadan, M., Hosen, M.I., Miksýk, M., Samarakoon, M.C., Wijayawardene, N.N., Kim, N.K., Matocec, N., Singh, P.N., Tian, Q., Bhatt, R.P., Jose, R., de Oliveira, V., Tulloss, R.E., Aamir, S., Kaewchai, S., Marathe, S.D., Khan, S., Hongsanan, S., Adhikari, S., Mehmood, T., Bandyopadhyay, T.K., Nguyen, T.T.T., Antonýn, V., Li, W.J., Wang, Y., Indoliya, Y., Tkalcec, Z., Elgorban, A.M., Bahkali, A.H., Tang, A.M.C., Su, H.Y., Zhang, H., Promputtha, I., Luangsa-ard, J., Xu, J.C., Yan, J.Y., Kang, J.C., Stadler, M., Mortimer, P.E., Chomnunti, P., Zhao, Q., Phillips, A.J.L., Nontachaiyapoom, S., Wen, T.C. &amp; Karunarathna, S.C. (2017) Fungal diversity notes 491–602: taxonomic and phylogenetic contributions to fungal taxa. <em>Fungal Diversity </em>43: 1–261. https://doi.org/10.1007/s13225-017-0378-0</p>
<p>Tamura, K., Stecher, G. &amp; Kumar, S. (2021) MEGA11: molecular evolutionary genetics analysis version 11. <em>Molecular Biology and Evolution</em> 38 (7): 3022–3027.&nbsp; https://doi.org/10.1093/molbev/msab120</p>
<p>Vilgalys, R. &amp; Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several <em>Cryptococcus </em>species. <em>Journal of Bacteriology </em>172: 4238–4246.&nbsp; https://doi.org/10.1128/jb.172.8.4238-4246.1990</p>
<p>Wanasinghe, D.N., Phukhamsakda, C., Hyde, K.D., Jeewon, R., Lee, B.L., Jones, E.B.G., Saowaluck, T., Tennakoon, D.S., Dissanayake, A.J., Jayasiri, S.C., Gafforov, Y., Camporesi, E., Bulgakov, T.S., Ekanayake, A.J., Jayasiri, S.C., Perera, R.H., Samarakoon, M.C., Goonasekara, I.D., Mapook, A., Li, W-J., Senanayake, I.C., Li, J., Norphanphoun, C., Doilom, M., Bahkali, A.H., Xu, J., Mortimer, P.E., Tibell, L., Tibell, S. &amp; Karunarantha, S.C. (2018) Fungal diversity notes 709–839: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on Rosaceae. <em>Fungal Diversity</em> 89: 1–236. https://doi.org/10.1007/s13225-018-0395-7</p>
<p>Wijayawardene, N.N., Hyde, K.D., Dai, D.Q., Sánchez-García, M., Goto, B.T., Saxena, R.K., Erdoðdu, M., Selçuk, F., Rajeshkumar, K.C., Aptroot, A., Błaszkowski, J., Boonyuen, N., da Silva, G.A., de Souza, F.A., Dong, W., Ertz, D., Haelewaters, D., Jones, E.B.G., Karunarathna, S.C., Kirk, P.M., Kukwa, M., Kumla, J., Leontyev, D.V., Lumbsch, H.T., Maharachchikumbura, S.S.N., Marguno, F., Martínez-Rodríguez, P., Mešić, A., Monteiro, J.S., Oehl, F., Pawłowska, J., Pem, D., Pfliegler, W.P., Phillips, A.J.L., Pošta, A., He, M.Q., Li, J.X., Raza, M., Sruthi, O.P., Suetrong, S., Suwannarach, N., Tedersoo, L., Thiyagaraja, V., Tibpromma, S., Tkalčec, Z., Tokarev, Y.S., Wanasinghe, D.N., Wijesundara, D.S.A., Wimalaseana, S.D.M.K., Madrid, H., Zhang, G.Q., Gao, Y., Sánchez-Castro, I., Tang, L.Z., Stadler, M., Yurkov, A. &amp; Thines, M. (2022) Outline of fungi and fungus-like taxa–2021. <em>Mycosphere </em>13: 53–453.&nbsp; https://doi.org/10.5943/mycosphere/13/1/2</p>
<p>White, T.J., Burns, T., Lee, S. &amp; Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. <em>In</em>: Innis, M.A., Gleaned, D.H., Sninsky, J.J. &amp; White, T.J. (Eds.) <em>PCR Protocols, a guide to methods and applications. </em>Academic, San Diego, pp. 315–322. http://dx.doi.org/10.1016/B978-0-12-372180-8.50042-1</p>
<p>Yu, Y.H., Sun, P.L., Lee, C.H., Su, C.J. &amp; Tseng, H.C. (2021) Deep cutaneous fungal infection by Pleosporales: an exceptional pathogen in tropical Taiwan. <em>The Journal of Dermatology</em> 48 (3): 413–417.&nbsp; https://doi.org/10.1111/1346-8138.15698</p>