Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2022-07-12
Page range: 189-200
Abstract views: 38
PDF downloaded: 2

Morphological and phylogenetic evidence reveal Tetraploa cylindrica sp. nov. (Tetraplosphaeriaceae, Pleosporales) from Saccharum arundinaceum (Poaceae) in Yunnan Province, China

Innovative Institute for Plant Health / Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China, Ministry of Agriculture and Rural Affairs, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, Guangdong, P.R. China; Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand; School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
Innovative Institute for Plant Health / Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China, Ministry of Agriculture and Rural Affairs, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, Guangdong, P.R. China
Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand; School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand; School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
Honghe Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe County 654400, Yunnan, P.R. China; World Agroforestry Centre, East and Central Asia, Kunming 650201, Yunnan, P.R. China
Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand; Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
Innovative Institute for Plant Health / Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China, Ministry of Agriculture and Rural Affairs, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, Guangdong, P.R. China
1 new taxon asexual morph Dothideomycetes multi-locus phylogeny saprobe taxonomy Fungi

Abstract

During an investigation of fungal saprobes of Yunnan Province, China, a species in Tetraplosphaeriaceae was collected from decaying stems of Saccharum arundinaceum (Poaceae). The taxon has oblong, dark brown to black, four-columned conidia with mostly three long apical appendages. Phylogenetic analyses of combined LSU, SSU, ITS, β-tubulin and tef1-α sequence data revealed that our collection is a member of Tetraploa and has a close affinity to T. aquatica, T. dashaoensis, and T. nagasakiensis. Based on the morphological comparison and multi-locus phylogeny, we introduce T. cylindrica as a new species. The newly discovered taxon is described, illustrated, and compared to related taxa. A taxonomic insight is presented based on our new data regarding the classification problems of asexual and sexual morphs of Tetraploa. In addition, this is the first report of Tetraploa species that occur on Saccharum arundinaceum. The results of the present study will expand our ecological knowledge of Tetraploa.

References

<p>Ando, K. (1992) A study of terrestrial aquatic hyphomycetes (in Japanese). <em>Transactions of the Mycological Society of Japan</em> 33: 415–425.</p>
<p>Ariyawansa, H.A., Hyde, K.D., Jayasiri, S.C., Buyck, B., Chethana, K.W.T., Dai, D.Q., Dai, Y.C., Daranagama, D.A., Jayawardena, R.S., Lücking, R., Ghobad-Nejhad, M., Niskanen, T., Thambugala, K.M., Voigt, K., Zhao, R.L., Li, G.J., Doilom, M., Boonmee, S., Yang, Z.L., Cai, Q., Cui, Y.Y., Bahkali, A.H., Chen, J., Cui, B.K., Chen, J.J., Dayarathne, M.C., Dissanayake, A.J., Ekanayaka, A.H., Hashimoto, A., Hongsanan, S., Jones, E.B.G., Larsson, E., Li, W.J., Li, Q.R., Liu, J.K., Luo, Z.L., Maharachchikumbura, S.S.N., Mapook, A., McKenzie, E.H.C., Norphanphoun, C., Konta, S., Pang, K.L., Perera, R.H., Phookamsak, R., Phukhamsakda, C., Pinruan, U., Randrianjohany, E., Singtripop, C., Tanaka, K., Tian, C.M., Tibpromma, S., Abdel-Wahab, M.A., Wanasinghe, D.N., Wijayawardene, N.N., Zhang, J.F., Zhang, H., Abdel-Aziz, F.A., Wedin, M., Westberg, M., Ammirati, J.F., Bulgakov, T.S., Lima, D.X., Callaghan, T.M., Callac, P., Chang, C.H., Coca, L.F., Dal-Forno, M., Dollhofer, V., Fliegerová, K., Greiner, K., Griffith, G.W., Ho, H.M., Hofstetter, V., Jeewon, R., Kang, J.C., Wen, T.C., Kirk, P.M., Kytövuori, I., Lawrey, J.D., Xing, J., Li, H., Liu, Z.Y., Liu, X.Z., Liimatainen, K., Lumbsch, H.T., Matsumura, M., Moncada, B., Nuankaew, S., Parnmen, S., de Azevedo Santiago, A.L.C.M., Sommai, S., Song, Y., de Souza, C.A.F., de Souza-Motta, C.M., Su, H.Y., Suetrong, S., Wang, Y., Wei, S.F., Wen, T.C., Yuan, H.S., Zhou, L.W., Réblová, M., Fournier, J., Camporesi, E., Luangsa-ard, J.J., Tasanathai, K., Khonsanit, A., Thanakitpipattana, D., Somrithipol, S., Diederich, P., Millanes, A.M., Common, R.S., Stadler, M., Yan, J.Y., Li, X., Lee, H.W., Nguyen, T.T.T., Lee, H.B., Battistin, E., Marsico, O., Vizzini, A., Vila, J., Ercole, E., Eberhardt, U., Simonini, G., Wen, H.A. &amp; Chen, X.H. (2015) Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa. <em>Fungal Diversity</em> 75: 27–274. https://doi.org/10.1007/s13225-015-0346-5</p>
<p>Berkeley, M.J. &amp; Broome, C.E. (1850) Notices of British fungi (438–501). <em>Annals and Magazine of Natural History</em> 5: 455–466. https://doi.org/10.1080/03745486009494947</p>
<p>Carbone, I. &amp; Kohn, L.M. (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. <em>Mycologia</em> 91: 553–556. https://doi.org/10.1080/00275514.1999.12061051</p>
<p>Chethana, K.W.T., Manawasinghe, I.S., Hurdeal, V.G., Bhunjun, C.S., Appadoo, M.A., Gentekaki, E., Raspé, O., Promputtha, I. &amp; Hyde, K.D. (2021) What are fungal species and how to delineate them? <em>Fungal Diversity</em> 109: 1–25.&nbsp; https://doi.org/10.1007/s13225-021-00483-9</p>
<p>Crous, P.W., Cowan, D.A., Maggs-Kölling, G., Yilmaz, N., Thangavel, R., Wingfield, M.J., Noordeloos, M.E., Dima, B., Brandrud, T.E., Jansen, G.M. &amp; Morozova, O.V. (2021) Fungal planet description sheets: 1182–1283. <em>Persoonia: Molecular Phylogeny and Evolution of Fungi</em> 46: 313–528. https://doi.org/10.3767/persoonia.2021.46.11</p>
<p>Dong, W., Wang, B., Hyde, K.D., McKenzie, E.H.C., Raja, H.A., Tanaka, K., Abdel-Wahab, M.A., Abdel-Aziz, F.A., Doilom, M., Phookamsak, R., Hongsanan, S., Wanasinghe, D.N., Yu, X.D., Wang, G.N., Yang, H., Yang, J., Thambugala, K.M., Tian, Q., Luo, Z.L., Yang, J.B., Miller, A.N., Fournier, J., Boonmee, S., Hu, D.M., Nalumpang, S. &amp; Zhang, H. (2020) Freshwater Dothideomycetes. <em>Fungal Diversity</em> 105: 319–575. https://doi.org/10.1007/s13225-020-00463-5</p>
<p>Ellis, M.B. (1949) <em>Tetraploa</em>. <em>Transactions of the British Mycological Society</em> 32: 246–251. https://doi.org/10.1016/S0007-1536(49)80013-1</p>
<p>Glass, N.L. &amp; Donaldson, G.C. (1995) Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. <em>Applied and Environmental Microbiology</em> 61: 1323–1330. https://doi.org/10.1128/aem.61.4.1323-1330.1995</p>
<p>Green, B.J., O’Meara, T., Sercombe, J.K. &amp; Tovey, E.R. (2006) Measurement of personal exposure to outdoor aeromycota in northern New South Wales, Australia<em>. Annals of Agricultural and Environmental Medicine</em> 13: 225–234. http://doi.org/10.2105/AJPH.2004.045823.</p>
<p>Hall, T.A. (1999) BioEdit: a user–friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. <em>Nucleic Acid Symposium Series</em> 41: 95–98.</p>
<p>Hatakeyama, S., Tanaka, K. &amp; Harada, Y. (2005) Bambusicolous fungi in Japan (5): three species of <em>Tetraploa</em>. <em>Mycoscience</em> 46: 196–200. http://doi.org/10.1007/s10267-005-0233-0</p>
<p>Hongsanan, S., Hyde, K.D., Phookamsak, R., Wanasinghe, D.N., McKenzie, E.H.C., Sarma, V.V., Boonmee, S., Lücking, R., Pem, D., Bhat, D.J., Liu, N., Tennakoon, D.S., Karunarathna, A., Jiang, S.H., Jones, E.B.G., Phillips, A.J.L., Manawasinghe, I., Tibpromma, S., Jayasiri, S.C., Sandamali, D., Jayawardena, R.S., Wijayawardene, N.N., Ekanayaka, A.H., Jeewon, R., Lu, Y.Z., Dissanayake, A.J., Luo, Z.L., Tian, Q., Phukhamsakda, C., Thambugala, K.M., Dai, D.Q., Chethana, T.K.W., Ertz, D., Doilom, M., Liu, J.K., Pérez-Ortega, S., Suija, A., Senwanna, C., Wijesinghe, S.N., Konta, S., Niranjan, M., Zhang, S.N., Ariyawansa, H.A., Jiang, H.B., Zhang, J.F., de, Silva, N.I., Thiyagaraja, V., Zhang, H., Bezerra, J.D.P., Miranda-Gonzáles, R., Aptroot, A., Kashiwadani, H., Harishchandra, D., Aluthmuhandiram, J.V.S., Abeywickrama, P.D., Bao, D.F., Devadatha, B., Wu, H.X., Moon, K.H., Gueidan, C., Schumm, F., Bundhun, D., Mapook, A., Monkai, J., Chomnunti, P., Samarakoon, M.C., Suetrong, S., Chaiwan, N., Dayarathne, M.C., Jing, Y., Rathnayaka, A.R., Bhunjun, C.S., Xu, J.C., Zheng, J.S., Liu, G., Feng, Y. &amp; Xie, N. (2020) Refined families of Dothideomycetes: Dothideomycetidae and Pleosporomycetidae. <em>Mycosphere</em> 11: 1553–2107. http://doi 10.5943/mycosphere/11/1/13</p>
<p>Huelsenbeck, J.P. &amp; Ronquist, F. (2001) MrBayes: Bayesian inference of phylogeny. <em>Bioinformatics</em> 17: 754–755.&nbsp; http://doi.org/10.1093/bioinformatics/17.8.754</p>
<p>Hyde, K.D., Jones, E.B.G., Liu, J.K., Ariyawansa, H.A., Boehm, E., Boonmee, S., Braun, U., Chomnunti, P., Crous, P.W., Dai, D.Q., Diederich, P., Dissanayake, A., Doilom, M., Doveri, F., Hongsanan, S., Jayawardena, R., Lawrey, J.D., Li, Y.M., Liu, Y.X., Lücking, R., Monkai, J., Muggia, L., Nelsen, M.P., Pang, K.L., Phookamsak, R., Senanayake, I.C., Shearer, C.A., Suetrong, S., Tanaka, K., Thambugala, K.M., Wijayawardene, N.N., Wikee, S., Wu, H.X., Zhang, Y., Aguirre-Hudson, B., Alias, S.A., Aptroot, A., Bahkali, A.H., Bezerra, J.L., Bhat, D.J., Camporesi, E., Chukeatirote, E., Gueidan, C., Hawksworth, D.L., Hirayama, K., Hoog, S.D., Kang, J.C., Knudsen, K., Li, W.J., Li, X.H., Liu, Z.Y., Mapook, A., McKenzie, E.H.C., Miller, A.N., Mortimer, P.E., Phillips, A.J.L., Raja, H.A., Scheuer, C., Schumm, F., Taylor, J.E., Tian, Q., Tibpromma, S., Wanasinghe, D.N., Wang, Y., Xu, J.C., Yacharoen, S., Yan, J.Y. &amp; Zhang, M. (2013) Families of Dothideomycetes. <em>Fungal Diversity</em> 63: 1–313. http://doi.org/10.1007/s13225-013-0263-44</p>
<p>Hyde, K.D., Dong, Y., Phookamsak, R., Jeewon, R., Bhat, D.J., Jones, E.B.G., Liu, N.G., Abeywickrama, P.D., Mapook, A., Wei, D.P., Perera, R.H., Manawasinghe, I.S., Pem, D., Bundhun, D., Karunarathna, A., Ekanayaka, A.H., Bao, D.F., Li, J.F., Samarakoon, M.C., Chaiwan, N., Lin, C.G., Phutthacharoen, K., Zhang, S.N., Senanayake, I.C., Goonasekara, I.D., Thambugala, K.M., Phukhamsakda, C., Tennakoon, D.S., Jiang, H.B., Yang, J., Zeng, M., Huanraluek, N., Liu, J.K., Wijesinghe, S.N., Tian, Q., Tibpromma, S., Brahmanage, R.S., Boonmee, S., Huang, S.K., Thiyagaraja, V., Lu, Y.Z., Jayawardena, R.S., Dong, W., Yang, E.F., Singh, S.K., Singh, S.M., Rana, S., Lad, S.S., Anand, G., Devadatha, B., Niranjan, M., Sarma, V.V., Liimatainen, K., Aguirre-Hudson, B., Niskanen, T., Overall, A., Alvarenga, R.L.M., Gibertoni, T.B., Pfliegler, W.P., Horvaìth, E., Imre, A., Alves, A.L., Santos, A.C.S., Tiago, P.V., Bulgakov, T.S., Wanasinghe, D.N., Bahkali, A.H., Doilom, M., Elgorban, A.M., Maharachchikumbura, S.S.N., Rajeshkumar, K.C., Haelewaters, D., Mortimer, P.E., Zhao, Q., Lumyong, S., Xu, J.C. &amp; Sheng, J. (2020a) Fungal diversity notes 1151–1276: taxonomic and phylogenetic contributions on genera and species of fungal taxa.<em> Fungal Diversity</em> 100: 5–277. https://doi.org/10.1007/s13225-020-00439-5</p>
<p>Hyde, K.D., Jeewon, R., Chen, Y.J., Bhunjun, C.S., Calabon, M.S., Jiang, H.B., Lin, C.G., Norphanphoun, C., Sysouphanthong, P., Pem, D., Tibpromma, S., Zhang, Q., Doilom, M., Jayawardena, R.S., Liu, J.K., Maharachchikumbura, S.S.N., Phukhamsakda, C., Phookamsak, R., Al-Sadi, A.M., Naritsada, Thongklang, N., Wang, Y., Gafforov, Y., Jones, E.B.G. &amp; Lumyong, S. (2020b) The numbers of fungi: is the descriptive curve flattening? <em>Fungal Diversity</em> 103, 219–271. https://doi.org/10.1007/s13225-020-00458-2</p>
<p>Hyde, K.D., Bao, D.F., Hongsanan, S., Chethana, K.T., Yang, J. &amp; Suwannarach, N. (2021) Evolution of freshwater Diaporthomycetidae (Sordariomycetes) provides evidence for five new orders and six new families. <em>Fungal Diversity</em> 107: 71–105. https://doi.org/10.1007/s13225-021-00469-7</p>
<p>Jayasiri, S.C., Hyde, K.D., Ariyawansa, H.A., Bhat, D.J., Buyck, B., Cai, L., Dai, Y.C., Abd–Elsalam, K.A., Ertz, D., Hidayat, I., Jeewon, R., Jones, E.B.G., Bahkali, A.H., Karunarathna, S.C., Liu, J.K., Luangsa–ard, J.J., Lumbsch, H.T., Maharachchikumbura, S.S.N., McKenzie, E.H.C., Moncalvo, J.M., Ghobad–Nejhad, M., Nilsson, H., Pang, K.L., Pereira, O.L., Phillips, A.J.L., Raspé, O., Rollins, A.W., Romero, A.I., Etayo, J., Selçuk, F., Stephenson, S.L., Suetrong, S., Taylor, J.E., Tsui, C.K.M., Vizzini, A., Abdel–Wahab, M.A., Wen, T.C., Boonmee, S., Dai, D.Q., Daranagama, D.A., Dissanayake, A.J., Ekanayaka, A.H., Fryar, S.C., Hongsanan, S., Jayawardena, R.S., Li, W.J., Perera, R.H., Phookamsak, R., de Silva, N.I., Thambugala, K.M., Tian, Q., Wijayawardene, N.N., Zhao, R.L., Zhao, Q., Kang, J.C. &amp; Promputtha, I. (2015) The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. <em>Fungal Diversity</em> 74: 3–18.&nbsp; http://dx.doi.org/10.1007/s13225-015-0351-8</p>
<p>Katoh, K. &amp; Standley, D.M. (2016) A simple method to control over–alignment in the MAFFT multiple sequence alignment program. <em>Bioinformatics</em> 32: 1933–1942.&nbsp; https://dx.doi.org/10.1093/bioinformatics/ Β-tubulinu 108.</p>
<p>Li, W.L., Bao, D.F., Bhat, D.J. &amp; Su, H.Y. (2020) <em>Tetraploa aquatica</em> (Tetraplosphaeriaceae), a new freshwater fungal species from Yunnan Province, China. <em>Phytotaxa</em> 459: 181–189.&nbsp; https://doi.org/10.11646/phytotaxa.459.2.8</p>
<p>Li, W.L., Bao, D.F., Liu, N.G., Hyde, K.D. &amp; Liu, J.K. (2021) <em>Aquatisphaeria thailandica</em> gen. et sp. nov. (Tetraplosphaeriaceae, Pleosporales) from a freshwater habitat in Thailand. <em>Phytotaxa</em> 513: 118–128.&nbsp; https://doi.org/10.11646/phytotaxa.544.2.0</p>
<p>Maharachchikumbura, S.S.N., Chen, Y., Ariyawansa, H.A., Hyde, K.D., Haelewaters, D., Perera, R.H., Samarakoon, M.C., Wanasinghe, D.N., Bustamante, D.E., Liu, J.K., Lawrence, D.P., Cheewangkoon, R. &amp; Stadler, M. (2021) Integrative approaches for species delimitation in Ascomycota. <em>Fungal Diversity</em> 109: 155–179.&nbsp; https://doi.org/10.1007/s13225-021-00486-6</p>
<p>Markham, W.D., Key, R.D., Padhye, A.A. &amp; Ajello, L. (1990) Phaeohyphomycotic cyst caused by <em>Tetraploa aristata</em>. <em>Medical Mycology</em> 28: 147–150. https://doi.org/10.1080/02681219080000191</p>
<p>Miller, M.A., Pfeiffer, W. &amp; Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. <em>In: Proceedings of the gateway computing environments workshop (GCE)</em>. Institute of Electrical and Electronics Engineers, New Orleans. 8 pp.&nbsp; https://doi.org/10.1109/GCE.2010.5676129</p>
<p>Rambaut, A. (2012) <em>FigTree v1. 4.0. A graphical viewer of phylogenetic trees</em>. Available from: http://tree.bio.ed.ac.uk/software/figtree/ (accessed 28 May 2022).</p>
<p>Rannala, B. &amp; Yang, Z. (1996) Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. <em>Journal of Molecular Evolution</em> 43: 304–311.&nbsp; https://doi.org/10.1007/BF02338839</p>
<p>Senanayake, I.C., Rathnayaka, A.R., Marasinghe, D.S., Calabon, M.S., Gentekaki, E., Lee, H.B., Hurdeal, V.G., Pem, D., Dissanayake, L.S., Wijesinghe, S.N., Bundhun, D., Nguyen, T.T., Goonasekara, I.D., Abeywickrama, P.D., Bhunjun, C.S., Jayawardena, R.S., Wanasinghe, D.N., Jeewon, R., Bhat, D.J. &amp; Xiang, M.M. (2020) Morphological approaches in studying fungi: collection, examination, isolation, sporulation and preservation. <em>Mycosphere</em> 11: 2678–2754. https://doi.org/10.5943/mycosphere/11/1/20</p>
<p>Stamatakis, A. (2014) RAXML version 8: a tool for phylogenetic analysis and post–analysis of large phylogenies. <em>Bioinformatics</em> 30: 1312–1313.&nbsp; https://doi.org/10.1093/bioinformatics/Β-tubulinu033</p>
<p>Stamatakis, A., Hoover, P. &amp; Rougemont, J. (2006) A rapid bootstrap algorithm for the RAxML web servers. <em>Systematic Biology</em> 57: 758–771.&nbsp; https://doi.org/10.1080/10635150802429642</p>
<p>Swofford, D.L. (2003) <em>PAUP: phylogenetic analysis using parsimony, Version 4.0 b10. Sinauer Associates, Sunderland MA.</em> Available from: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3348772 (accessed 4 October 2021).</p>
<p>Tanaka, K., Hirayama, K., Yonezawa, H., Hatakeyama, S., Harada, Y., Sano, T., Shirouzu, T. &amp; Hosoya, T. (2009) Molecular taxonomy of bambusicolous fungi: Tetraplosphaeriaceae, a new pleosporalean family with tetraploa-like anamorphs. <em>Studies in Mycology</em> 64: 175–209. https://doi.org/10.3114/sim.2009.64.10</p>
<p>Vilgalys, R. &amp; Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several <em>Cryptococcus</em> species. <em>Journal of Bacteriology</em> 172: 4238–4246.&nbsp; https://doi.org/ 10.1128/jb.172.8.4238-4246.1990</p>
<p>White, T.J., Bruns, T., Lee, S. &amp; Taylor, J.W. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. <em>In:</em> Innis, M.A., Gelfand, D.H., Sninsky, J.J. &amp; White, T.J. (Eds.) <em>PCR protocols: a guide to methods and applications</em>. Academic press, London, pp. 482. https://doi.org/10.1016/B978-0-12-372180-8.50042-1</p>
<p>Zhaxybayeva, O. &amp; Gogarten, J.P. (2002) Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses<em>. BMC genomics</em> 3: 1–4.&nbsp; https://doi.org/10.1186/1471-2164-3-4</p>