Abstract
Coffee, an important economic crop, is often threatened by fungal infections. During a survey of coffee fungi in Yunnan Province, China, two saprobic Stictidaceae species were collected. Maximum likelihood (ML) and Bayesian posterior probability of combined LSU, ITS and mtSSU genes supported the placement of our fungal collections within Fitzroyomyces and Ostropomyces with high statistical support. A new species, Fitzroyomyces yunnanensis sp. nov. and a new record, Ostropomyces pruinosellus are introduced. These two species were recorded on coffee wood in sexual and asexual states, respectively. Their taxonomic placements were further supported by detailed morphological and phylogenetic comparisons of allied taxa.
References
Angélico, C.L., Chalfoun, S.M. & de Resende, M.L.V. (2017) Hyperparasitism on mycotoxigenic fungus Aspergillus ochraceus G. Wilh. by Cladosporium cladosporioides (Fresen) de Vries. International Journal of Environmental and Agriculture Research 3 (11): 14–16. https://doi.org/10.25125/agriculture-journal-IJOEAR-OCT-2017-17
Adhikari, M., Isaac, E.L., Paterson, R.R.M. & Maslin, M.A. (2020) A review of potential impacts of climate change on coffee cultivation and mycotoxigenic fungi. Microorganisms 8 (10): 1625. https://doi.org/10.3390/microorganisms8101625
Baloch, E., Gilenstam, G. & Wedin, M. (2009) Phylogeny and classification of Cryptodiscus, with a taxonomic synopsis of the Swedish species. Fungal Diversity 38: 51–68.
Baloch, E., Lücking, R., Lumbsch, H.T. & Wedin, M. (2010) Major clades and phylogenetic relationships between lichenized and non-lichenized lineages in Ostropales (Ascomycota: Lecanoromycetes). Taxon 59 (5): 1483–1494. https://doi.org/10.1002/tax.595013
Baloch, E., Gilenstam, G. & Wedin, M. (2013) The relationships of Odontotrema (Odontotremataceae) and the resurrected Sphaeropezia (Stictidaceae)—new combinations and three new Sphaeropezia species. Mycologia 105 (2): 384–397. https://doi.org/10.3852/12-134
Botrel, D.A., Laborde, M.C.F., Medeiros, F.H.V.D., Resende, M.L.V.D., Ribeiro Júnio, P.M., Pascholati, S.F. & Gusmão, L.F.P. (2018) Saprobic fungi as biocontrol agents of halo blight (Pseudomonas syringae pv. garcae) in coffee clones. Coffee Science 13: 283–291. http://dx.doi.org/10.25186/cs.v13i3.1438
Cerda, R., Avelino, J., Gary, C., Tixier, P., Lechevallier, E. & Allinne, C. (2017) Primary and secondary yield losses caused by pests and diseases: assessment and modeling in coffee. PloS one 12 (1): e0169133. https://doi.org/10.1371/journal.pone.0169133
Chen, S. (2013) Research on the development of coffee industrial chain and strategic analysis in China. Master’s in Management Thesis. Hainan University.
Crous, P.W., Wingfield, M.J., Burgess, T.I., Carnegie, A.J., Hardy, G.S.J., Smith, D. & Groenewald, J.Z. (2017) Fungal Planet description sheets: 625–715. Persoonia 39: 270. https://doi.org/10.3767/persoonia.2017.39.11
De Silva, N.I., Brooks, S., Lumyong, S. & Hyde, K.D. (2019) Use of endophytes as biocontrol agents. Fungal Biology Reviews 33 (2): 133–148. https://doi.org/10.1016/j.fbr.2018.10.001
Dissanayake, A.J., Bhunjun, C.S., Maharachchikumbura, S.S.N. & Liu, J.K. (2020) Applied aspects of methods to infer phylogenetic relationships amongst fungi. Mycosphere 11 (1): 2652–2676. https://doi.org/10.5943/mycosphere/11/1/18
Ekanayaka, A.H., Hyde, K.D., Jones, E.B.G., Zhao, Q. & Bulgakov, T.S. (2019) New and known discolichens from Asia and eastern Europe. Asian Journal of Mycology 2 (1): 48–86. https://doi.org/10.5943/ajom/2/1/2
Fries, E.M. (1849) Summa vegetabilium Scandinaviae 2. Bonnies: Winter Park, FL, USA, pp. 259–572.
Hyde, K.D., Xu, J.C., Rapior, S., Jeewon, R., Lumyong, S., Niego, A.G, Abeywickrama, P.D, Aluthmuhandiram, J.V, Brahamanage, R.S, Brooks, S., Chaiyasen, A., Chethana, K.W.T., Chomnunti, P., Chepkirui, C., Chuankid, B., de Silva, N.I., Doilom, M., Faulds, C., Gentekaki, E., Gopalan, V., Kakumyan, P., Harishchandra, D., Hemachandran, H., Hongsanan, S., Karunarathna, A., Karunarathna, S.C., Khan, S., Kumla, J., Jayawardena, R.S., Liu, J.K., Liu, N.G., Luangharn, T., Macabeo, A.P.G., Marasinghe, D.S., Meeks, D., Mortimer, P.E., Mueller, P., Nadir, S., Nataraja, K.N., Nontachaiyapoom, S., O’Brien, M., Penkhrue, W., Phukhamsakda, C., Ramanan, U.S., Rathnayaka, A.R., Sadaba, R.B., Sandargo, B., Samarakoon, B.C., Tennakoon, D.S., Siva, R., Sriprom, W., Suryanarayanan, T.S., Sujarit, K., Suwannarach, N., Suwunwong, T., Thongbai, B., Thongklang, N., Wei, D.P., Wijesinghe, S.N., Winiski, J., Yan, J.Y., Yasanthika, E. & Stadler, M. (2019) The amazing potential of fungi, 50 ways we can exploit fungi industrially. Fungal Diversity 97: 1–136. https://doi.org/10.1007/s13225-019-00430-9
Hyde, K.D., Jeewon, R., Chen, Y.J., Bhunjun, C.S., Calabon, M.S., Jiang, H.B., Lin, C.G., Norphanphoun, C., Sysouphanthong, P., Pem, D., Tibpromma, S., Zhang, Q., Doilom, M., Jayawardena, R.S., Liu, J.K., Maharachchikumbura, S.S.N., Phukhamsakda, C., Phookamsak, R., Al-Sadi, A.M., Thongklang, N., Wang, Y., Gafforov, Y., Jones, E.B.G. & Lumyong, S. (2020) The numbers of fungi: is the descriptive curve flattening? Fungal Diversity 103: 219–271. https://doi.org/10.1007/s13225-020-00458-2
Index Fungorum. (2021) Available from: http://www.indexfungorum.org/Names/IndexFungorumPartnership.htm (accessed 13 December 2021)
Jayasiri, S.C., Hyde, K.D., Ariyawansa, H.A., Bhat, J., Buyck, B., Cai, L., Dai, Y.C., Abd-Elsalam, K.A., Ertz, D., Hidayat, I., Jeewon, R., Jones, E.B.G., Bahkali, A.H., Karunarathna, S.C., Liu, J.K., Luangsa-ard, J.J., Lumbsch, H.T., Maharachchikumbura, S.S.N., McKenzie, E.H.C., Moncalvo, J.M., Ghobad-Nejhad, M, Nilsson, H., Pang, K.A., Pereira, O.L., Phillips, A.J.L., Raspé, O., Rollins, A.W., Romero, A.I., Etayo, J., Selçuk, F., Stephenson, S.L., Suetrong, S., Taylor, J.E., Tsui, C.K.M., Vizzini, A., Abdel-Wahab, M.A., Wen, T.C., Boonmee, S., Dai, D.Q., Daranagama, D.A., Dissanayake, A.J., Ekanayaka, A.H., Fryar, S.C., Hongsanan, S., Jayawardena, R.S., Li, W.J., Perera, R.H., Phookamsak, R., de Silva, N.I., Thambugala, K.M., Tian, Q., Wijayawarden, N.N., Zhao, R.L., Zhao, Q., Kang, J.C. & Promputtha, I. (2015) The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. Fungal Diversity 74: 3–18. https://doi.org/10.1007/s13225-015-0351-8
Jeewon, R. & Hyde, K.D. (2016) Establishing species boundaries and new taxa among fungi: recommendations to resolve taxonomic ambiguities. Mycosphere 7: 1669–1677. https://doi.org/10.5943/mycosphere/7/11/4
Krishnan, S., Matsumoto, T., Nagai, C., Falconer, J., Shriner, S., Long, J. & Vega, F.E. (2021) Vulnerability of coffee (Coffea spp.) genetic resources. Genetic Resources and Crop Evolution 68: 2691–2710. https://doi.org/10.1007/s10722-021-01217-1
Los Santos-Briones, D. & Hernández-Sotomayor, S.M. (2006) Coffee biotechnology. Brazilian Journal of Plant Physiology 18 (1): 217–227. https://doi.org/10.1590/S1677-04202006000100015
Lemma, D.T. & Megersa, H.G. (2021) Impact of climate change on East African coffee production and its mitigation strategies. World Journal of Agricultural Sciences 17 (2): 81–89. https://doi.org/10.5829/idosi.wjas.2021.81.89
Lu, L., Tibpromma, S., Karunarathna, S.C., Jayawardena, R.S., Lumyong, S., Xu, J. & Hyde, K.D. (2021) The first comprehensive review of fungi on coffee. (Submitted to pathogens).
Murthy, P.S. & Naidu, M.M. (2012) Sustainable management of coffee industry by-products and value addition—a review. Resources, Conservation and Recycling 66: 45–58. https://doi.org/10.1016/j.resconrec.2012.06.005
Neilson, J. & Wang, J.H.Z. (2019) China and the changing economic geography of coffee value chains. Singapore Journal of Tropical Geography 40 (3): 429–451. https://doi.org/10.1111/sjtg.12279
Nannfeldt, J.A. (1932) Studien uber die Morphologie und Systematik der nicht-lichenisierten inoperculaten Discomyceten. Nova Acta Regiae Societatis Scientiarum Upsaliensis Ser. IV, 8: 1–368.
Persoon, C.H. (1800) Observationes mycologicae. Vol. 2. pp. 1–106.
Phukhamsakda, C., McKenzie, E.H.C., Phillips, A.J., Jones, E.G., Bhat, D.J., Stadler, M. & Hyde, K.D. (2020) Microfungi associated with Clematis (Ranunculaceae) with an integrated approach to delimiting species boundaries. Fungal Diversity 102 (1): 1–203. https://doi.org/10.1007/s13225-020-00448-4
Pino-Bodas, R., Zhurbenko, M.P. & Stenroos, S. (2017) Phylogenetic placement within Lecanoromycetes of lichenicolous fungi associated with Cladonia and some other genera. Persoonia 39: 91. https://doi.org/10.3767/persoonia.2017.39.05
Quaedvlieg, W., Verkley, G.J.M., Shin, H.D., Barreto, R.W., Alfenas, A.C., Swart, W.J. & Crous, P.W. (2013) Sizing up Septoria. Studies in Mycology 75: 307–390. https://doi.org/10.3114/sim0017
Sherwood, M.A. (1977) The ostropalean fungi. Mycotaxon 5: 1–277.
Senanayake, I.C., Rathnayake, A.R., Marasinghe, D.S., Calabon, M.S., Gentekaki, E. & Lee, H.B. (2020) Morphological approaches in studying fungi: collection, examination, isolation, sporulation and preservation. Mycosphere 11 (1): 2678–2754. https://doi.org/10.5943/mycosphere/11/1/20
Tibpromma, S., Hyde, K.D., McKenzie, E.H.C., Bhat, D.J., Phillips, A.J., Wanasinghe, D.N. & Karunarathna, S.C. (2018) Fungal diversity notes 840–928: micro-fungi associated with Pandanaceae. Fungal Diversity 93 (1): 1–160. https://doi.org/10.1007/s13225-018-0408-6
Thiyagaraja, V., Lücking, R., Ertz, D., Karunarathna, S.C., Wanasinghe, D.N., Lumyong, S. & Hyde, K.D. (2021) The evolution of life modes in Stictidaceae, with three novel taxa. Journal of Fungi 7 (2): 105. https://doi.org/10.3390/jof7020105
Verkley, G.J.M., Quaedvlieg, W., Shin, H.D. & Crous, P.W. (2013) A new approach to species delimitation in Septoria. Studies in Mycology 75: 213–305. https://doi.org/10.3114/sim0018
Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172 (8): 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
Wedin, M., Döring, H. & Gilenstam, G. (2004) Saprotrophy and lichenization as options for the same fungal species on different substrata: environmental plasticity and fungal lifestyles in the Stictis-Conotrema complex. New Phytologist 164 (3): 459–465. https://doi.org/10.1111/j.1469-8137.2004.01198.x
Wedin, M., Döring, H., Könberg, K. & Gilenstam, G. (2005) Generic delimitations in the family Stictidaceae (Ostropales, Ascomycota): the Stictis-Conotrema problem. The Lichenologist 37 (1): 67–75. https://doi.org/10.1017/S0024282904014653
Wei, D.P., Wanasinghe, D.N., Gentekaki, E., Thiyagaraja, V., Lumyong, S. & Hyde, K.D. (2021) Morphological and phylogenetic appraisal of novel and extant taxa of Stictidaceae from Northern Thailand. Journal of Fungi 7 (10): 880. https://doi.org/10.3390/jof7100880
White, T.J., Bruns, T., Lee, S.J.W.T. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR protocols: a guide to methods and applications 18 (1): 315–322.
Wijayawardene, N.N., Hyde, K.D., Al-Ani, L.K.T., Tedersoo, L., Haelewaters, D., Rajeshkumar, K.C., Zhao, R.L., Aptroot, A., Leontyev, D.V., Saxena, R.K., Tokarev, Y.S., Dai, D.Q., Letcher, P.M., Stephenson, S.L., Ertz, D., Lumbsch, H.T., Kukwa, M., Issi, I.V., Madrid, H., Phillips, A.J.L., Selbmann, L., Pfliegler, W.P., Horvath, E., Bensch, K., Kirk, P.M., Kolarikova, K., Raja, H.A., Radek, R., Papp, V., Dima, B., Ma, J., Malosso, E., Takamatsu, S., Rambold, G., Gannibal, P.B., Triebel, D., Gautam, A.K., Avasthi, S., Suetrong, S., Timdal, E., Fryar, S.C., Delgado, G., Reblova, M., Doilom, M., Dolatabadi, S., Pawlowska, J.Z., Humber, R.A., Kodsueb, R., Sanchez-Castro, I., Goto, B.T., Silva, D.K.A., de Souza, F.A., Oehl, F.R., da Silva, G.A., Silva, I.R., Blaszkowski, J., Jobim, K., Maia, L.C., Barbosa, F.R., Fiuza, P.O., Divakar, P.K., Shenoy, B.D., Castaneda-Ruiz, R.F., Somrithipol, S., Lateef, A.A., Karunarathna, S.C., Tibpromma, S., Mortimer, P.E., Wanasinghe, D.N., Phookamsak, R., Xu, J.P., Wang, Y., Tian, F., Alvarado, P., Li, D.W., Kusan, I., Matocec, N., Masic, A., Tkalcec, Z., Maharachchikumbura, S.S.N., Papizadeh, M., Heredia, G., Wartchow, F., Bakhshi, M., Boehm, E., Youssef, N., Hustad, V.P., Lawrey, J.D., Santiago, A.L.C.M.A., Bezerra, J.D.P., Souza-Motta, C.M., Firmino, A.L., Tian, Q., Houbraken, J., Hongsanan, S., Tanaka, K., Dissanayake, A.J., Monteiro, J.S., Grossart, H.P., Suija, A., Weerakoon, G., Etayo, J., Tsurykau, A., Vazquez, V., Mungai, P., Damm, U., Li, Q.R., Zhang, H., Boonmee, S., Lu, Y.Z., Becerra, A.G., Kendrick, B., Brearley, F.Q., Motiejunaite, J., Sharma, B., Khare, R., Gaikwad, S., Wijesundara, D.S.A., Tang, L.Z., He, M.Q., Flakus, A., Rodriguez-Flakus, P., Zhurbenko, M.P., McKenzie, E.H.C., Stadler, M., Bhat, D.J., Liu, J.K., Raza, M., Jeewon, R., Nassonova, E.S., Prieto, M., Jayalal, R.G.U., Erdogdu, M., Yurkov, A., Schnittler, M., Shchepin, O.N., Novozhilov, Y.K., Silva-Filho, A.G.S., Gentekaki, E., Liu, P., Cavender, J.C., Kang, Y., Mohammad, S., Zhang, L.F., Xu, R.F., Li, Y.M., Dayarathne, M.C., Ekanayaka, A.H., Wen, T.C., Deng, C.Y., Pereira, O.L., Navathe, S., Hawksworth, D.L., Fan, X.L., Dissanayake, L.S., Kuhnert, E. & Thines, M. (2020) Outline of Fungi and fungus-like taxa. Mycosphere 11: 1060–1456. https://doi.org/10.5943/mycosphere/11/1/8
Zhang, H., Li, J., Zhou, H., Chen, Z., Song, G., Peng, Z. & Varzea, V.M.P. (2014) Arabica coffee production in the Yunnan Province of China. In 24th International Conference on Coffee Science.
Zoller, S., Scheidegger, C. & Sperisen, C. (1999) PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes. The Lichenologist 31 (5): 511–516. https://doi.org/10.1006/lich.1999.0220
Adhikari, M., Isaac, E.L., Paterson, R.R.M. & Maslin, M.A. (2020) A review of potential impacts of climate change on coffee cultivation and mycotoxigenic fungi. Microorganisms 8 (10): 1625. https://doi.org/10.3390/microorganisms8101625
Baloch, E., Gilenstam, G. & Wedin, M. (2009) Phylogeny and classification of Cryptodiscus, with a taxonomic synopsis of the Swedish species. Fungal Diversity 38: 51–68.
Baloch, E., Lücking, R., Lumbsch, H.T. & Wedin, M. (2010) Major clades and phylogenetic relationships between lichenized and non-lichenized lineages in Ostropales (Ascomycota: Lecanoromycetes). Taxon 59 (5): 1483–1494. https://doi.org/10.1002/tax.595013
Baloch, E., Gilenstam, G. & Wedin, M. (2013) The relationships of Odontotrema (Odontotremataceae) and the resurrected Sphaeropezia (Stictidaceae)—new combinations and three new Sphaeropezia species. Mycologia 105 (2): 384–397. https://doi.org/10.3852/12-134
Botrel, D.A., Laborde, M.C.F., Medeiros, F.H.V.D., Resende, M.L.V.D., Ribeiro Júnio, P.M., Pascholati, S.F. & Gusmão, L.F.P. (2018) Saprobic fungi as biocontrol agents of halo blight (Pseudomonas syringae pv. garcae) in coffee clones. Coffee Science 13: 283–291. http://dx.doi.org/10.25186/cs.v13i3.1438
Cerda, R., Avelino, J., Gary, C., Tixier, P., Lechevallier, E. & Allinne, C. (2017) Primary and secondary yield losses caused by pests and diseases: assessment and modeling in coffee. PloS one 12 (1): e0169133. https://doi.org/10.1371/journal.pone.0169133
Chen, S. (2013) Research on the development of coffee industrial chain and strategic analysis in China. Master’s in Management Thesis. Hainan University.
Crous, P.W., Wingfield, M.J., Burgess, T.I., Carnegie, A.J., Hardy, G.S.J., Smith, D. & Groenewald, J.Z. (2017) Fungal Planet description sheets: 625–715. Persoonia 39: 270. https://doi.org/10.3767/persoonia.2017.39.11
De Silva, N.I., Brooks, S., Lumyong, S. & Hyde, K.D. (2019) Use of endophytes as biocontrol agents. Fungal Biology Reviews 33 (2): 133–148. https://doi.org/10.1016/j.fbr.2018.10.001
Dissanayake, A.J., Bhunjun, C.S., Maharachchikumbura, S.S.N. & Liu, J.K. (2020) Applied aspects of methods to infer phylogenetic relationships amongst fungi. Mycosphere 11 (1): 2652–2676. https://doi.org/10.5943/mycosphere/11/1/18
Ekanayaka, A.H., Hyde, K.D., Jones, E.B.G., Zhao, Q. & Bulgakov, T.S. (2019) New and known discolichens from Asia and eastern Europe. Asian Journal of Mycology 2 (1): 48–86. https://doi.org/10.5943/ajom/2/1/2
Fries, E.M. (1849) Summa vegetabilium Scandinaviae 2. Bonnies: Winter Park, FL, USA, pp. 259–572.
Hyde, K.D., Xu, J.C., Rapior, S., Jeewon, R., Lumyong, S., Niego, A.G, Abeywickrama, P.D, Aluthmuhandiram, J.V, Brahamanage, R.S, Brooks, S., Chaiyasen, A., Chethana, K.W.T., Chomnunti, P., Chepkirui, C., Chuankid, B., de Silva, N.I., Doilom, M., Faulds, C., Gentekaki, E., Gopalan, V., Kakumyan, P., Harishchandra, D., Hemachandran, H., Hongsanan, S., Karunarathna, A., Karunarathna, S.C., Khan, S., Kumla, J., Jayawardena, R.S., Liu, J.K., Liu, N.G., Luangharn, T., Macabeo, A.P.G., Marasinghe, D.S., Meeks, D., Mortimer, P.E., Mueller, P., Nadir, S., Nataraja, K.N., Nontachaiyapoom, S., O’Brien, M., Penkhrue, W., Phukhamsakda, C., Ramanan, U.S., Rathnayaka, A.R., Sadaba, R.B., Sandargo, B., Samarakoon, B.C., Tennakoon, D.S., Siva, R., Sriprom, W., Suryanarayanan, T.S., Sujarit, K., Suwannarach, N., Suwunwong, T., Thongbai, B., Thongklang, N., Wei, D.P., Wijesinghe, S.N., Winiski, J., Yan, J.Y., Yasanthika, E. & Stadler, M. (2019) The amazing potential of fungi, 50 ways we can exploit fungi industrially. Fungal Diversity 97: 1–136. https://doi.org/10.1007/s13225-019-00430-9
Hyde, K.D., Jeewon, R., Chen, Y.J., Bhunjun, C.S., Calabon, M.S., Jiang, H.B., Lin, C.G., Norphanphoun, C., Sysouphanthong, P., Pem, D., Tibpromma, S., Zhang, Q., Doilom, M., Jayawardena, R.S., Liu, J.K., Maharachchikumbura, S.S.N., Phukhamsakda, C., Phookamsak, R., Al-Sadi, A.M., Thongklang, N., Wang, Y., Gafforov, Y., Jones, E.B.G. & Lumyong, S. (2020) The numbers of fungi: is the descriptive curve flattening? Fungal Diversity 103: 219–271. https://doi.org/10.1007/s13225-020-00458-2
Index Fungorum. (2021) Available from: http://www.indexfungorum.org/Names/IndexFungorumPartnership.htm (accessed 13 December 2021)
Jayasiri, S.C., Hyde, K.D., Ariyawansa, H.A., Bhat, J., Buyck, B., Cai, L., Dai, Y.C., Abd-Elsalam, K.A., Ertz, D., Hidayat, I., Jeewon, R., Jones, E.B.G., Bahkali, A.H., Karunarathna, S.C., Liu, J.K., Luangsa-ard, J.J., Lumbsch, H.T., Maharachchikumbura, S.S.N., McKenzie, E.H.C., Moncalvo, J.M., Ghobad-Nejhad, M, Nilsson, H., Pang, K.A., Pereira, O.L., Phillips, A.J.L., Raspé, O., Rollins, A.W., Romero, A.I., Etayo, J., Selçuk, F., Stephenson, S.L., Suetrong, S., Taylor, J.E., Tsui, C.K.M., Vizzini, A., Abdel-Wahab, M.A., Wen, T.C., Boonmee, S., Dai, D.Q., Daranagama, D.A., Dissanayake, A.J., Ekanayaka, A.H., Fryar, S.C., Hongsanan, S., Jayawardena, R.S., Li, W.J., Perera, R.H., Phookamsak, R., de Silva, N.I., Thambugala, K.M., Tian, Q., Wijayawarden, N.N., Zhao, R.L., Zhao, Q., Kang, J.C. & Promputtha, I. (2015) The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. Fungal Diversity 74: 3–18. https://doi.org/10.1007/s13225-015-0351-8
Jeewon, R. & Hyde, K.D. (2016) Establishing species boundaries and new taxa among fungi: recommendations to resolve taxonomic ambiguities. Mycosphere 7: 1669–1677. https://doi.org/10.5943/mycosphere/7/11/4
Krishnan, S., Matsumoto, T., Nagai, C., Falconer, J., Shriner, S., Long, J. & Vega, F.E. (2021) Vulnerability of coffee (Coffea spp.) genetic resources. Genetic Resources and Crop Evolution 68: 2691–2710. https://doi.org/10.1007/s10722-021-01217-1
Los Santos-Briones, D. & Hernández-Sotomayor, S.M. (2006) Coffee biotechnology. Brazilian Journal of Plant Physiology 18 (1): 217–227. https://doi.org/10.1590/S1677-04202006000100015
Lemma, D.T. & Megersa, H.G. (2021) Impact of climate change on East African coffee production and its mitigation strategies. World Journal of Agricultural Sciences 17 (2): 81–89. https://doi.org/10.5829/idosi.wjas.2021.81.89
Lu, L., Tibpromma, S., Karunarathna, S.C., Jayawardena, R.S., Lumyong, S., Xu, J. & Hyde, K.D. (2021) The first comprehensive review of fungi on coffee. (Submitted to pathogens).
Murthy, P.S. & Naidu, M.M. (2012) Sustainable management of coffee industry by-products and value addition—a review. Resources, Conservation and Recycling 66: 45–58. https://doi.org/10.1016/j.resconrec.2012.06.005
Neilson, J. & Wang, J.H.Z. (2019) China and the changing economic geography of coffee value chains. Singapore Journal of Tropical Geography 40 (3): 429–451. https://doi.org/10.1111/sjtg.12279
Nannfeldt, J.A. (1932) Studien uber die Morphologie und Systematik der nicht-lichenisierten inoperculaten Discomyceten. Nova Acta Regiae Societatis Scientiarum Upsaliensis Ser. IV, 8: 1–368.
Persoon, C.H. (1800) Observationes mycologicae. Vol. 2. pp. 1–106.
Phukhamsakda, C., McKenzie, E.H.C., Phillips, A.J., Jones, E.G., Bhat, D.J., Stadler, M. & Hyde, K.D. (2020) Microfungi associated with Clematis (Ranunculaceae) with an integrated approach to delimiting species boundaries. Fungal Diversity 102 (1): 1–203. https://doi.org/10.1007/s13225-020-00448-4
Pino-Bodas, R., Zhurbenko, M.P. & Stenroos, S. (2017) Phylogenetic placement within Lecanoromycetes of lichenicolous fungi associated with Cladonia and some other genera. Persoonia 39: 91. https://doi.org/10.3767/persoonia.2017.39.05
Quaedvlieg, W., Verkley, G.J.M., Shin, H.D., Barreto, R.W., Alfenas, A.C., Swart, W.J. & Crous, P.W. (2013) Sizing up Septoria. Studies in Mycology 75: 307–390. https://doi.org/10.3114/sim0017
Sherwood, M.A. (1977) The ostropalean fungi. Mycotaxon 5: 1–277.
Senanayake, I.C., Rathnayake, A.R., Marasinghe, D.S., Calabon, M.S., Gentekaki, E. & Lee, H.B. (2020) Morphological approaches in studying fungi: collection, examination, isolation, sporulation and preservation. Mycosphere 11 (1): 2678–2754. https://doi.org/10.5943/mycosphere/11/1/20
Tibpromma, S., Hyde, K.D., McKenzie, E.H.C., Bhat, D.J., Phillips, A.J., Wanasinghe, D.N. & Karunarathna, S.C. (2018) Fungal diversity notes 840–928: micro-fungi associated with Pandanaceae. Fungal Diversity 93 (1): 1–160. https://doi.org/10.1007/s13225-018-0408-6
Thiyagaraja, V., Lücking, R., Ertz, D., Karunarathna, S.C., Wanasinghe, D.N., Lumyong, S. & Hyde, K.D. (2021) The evolution of life modes in Stictidaceae, with three novel taxa. Journal of Fungi 7 (2): 105. https://doi.org/10.3390/jof7020105
Verkley, G.J.M., Quaedvlieg, W., Shin, H.D. & Crous, P.W. (2013) A new approach to species delimitation in Septoria. Studies in Mycology 75: 213–305. https://doi.org/10.3114/sim0018
Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172 (8): 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
Wedin, M., Döring, H. & Gilenstam, G. (2004) Saprotrophy and lichenization as options for the same fungal species on different substrata: environmental plasticity and fungal lifestyles in the Stictis-Conotrema complex. New Phytologist 164 (3): 459–465. https://doi.org/10.1111/j.1469-8137.2004.01198.x
Wedin, M., Döring, H., Könberg, K. & Gilenstam, G. (2005) Generic delimitations in the family Stictidaceae (Ostropales, Ascomycota): the Stictis-Conotrema problem. The Lichenologist 37 (1): 67–75. https://doi.org/10.1017/S0024282904014653
Wei, D.P., Wanasinghe, D.N., Gentekaki, E., Thiyagaraja, V., Lumyong, S. & Hyde, K.D. (2021) Morphological and phylogenetic appraisal of novel and extant taxa of Stictidaceae from Northern Thailand. Journal of Fungi 7 (10): 880. https://doi.org/10.3390/jof7100880
White, T.J., Bruns, T., Lee, S.J.W.T. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR protocols: a guide to methods and applications 18 (1): 315–322.
Wijayawardene, N.N., Hyde, K.D., Al-Ani, L.K.T., Tedersoo, L., Haelewaters, D., Rajeshkumar, K.C., Zhao, R.L., Aptroot, A., Leontyev, D.V., Saxena, R.K., Tokarev, Y.S., Dai, D.Q., Letcher, P.M., Stephenson, S.L., Ertz, D., Lumbsch, H.T., Kukwa, M., Issi, I.V., Madrid, H., Phillips, A.J.L., Selbmann, L., Pfliegler, W.P., Horvath, E., Bensch, K., Kirk, P.M., Kolarikova, K., Raja, H.A., Radek, R., Papp, V., Dima, B., Ma, J., Malosso, E., Takamatsu, S., Rambold, G., Gannibal, P.B., Triebel, D., Gautam, A.K., Avasthi, S., Suetrong, S., Timdal, E., Fryar, S.C., Delgado, G., Reblova, M., Doilom, M., Dolatabadi, S., Pawlowska, J.Z., Humber, R.A., Kodsueb, R., Sanchez-Castro, I., Goto, B.T., Silva, D.K.A., de Souza, F.A., Oehl, F.R., da Silva, G.A., Silva, I.R., Blaszkowski, J., Jobim, K., Maia, L.C., Barbosa, F.R., Fiuza, P.O., Divakar, P.K., Shenoy, B.D., Castaneda-Ruiz, R.F., Somrithipol, S., Lateef, A.A., Karunarathna, S.C., Tibpromma, S., Mortimer, P.E., Wanasinghe, D.N., Phookamsak, R., Xu, J.P., Wang, Y., Tian, F., Alvarado, P., Li, D.W., Kusan, I., Matocec, N., Masic, A., Tkalcec, Z., Maharachchikumbura, S.S.N., Papizadeh, M., Heredia, G., Wartchow, F., Bakhshi, M., Boehm, E., Youssef, N., Hustad, V.P., Lawrey, J.D., Santiago, A.L.C.M.A., Bezerra, J.D.P., Souza-Motta, C.M., Firmino, A.L., Tian, Q., Houbraken, J., Hongsanan, S., Tanaka, K., Dissanayake, A.J., Monteiro, J.S., Grossart, H.P., Suija, A., Weerakoon, G., Etayo, J., Tsurykau, A., Vazquez, V., Mungai, P., Damm, U., Li, Q.R., Zhang, H., Boonmee, S., Lu, Y.Z., Becerra, A.G., Kendrick, B., Brearley, F.Q., Motiejunaite, J., Sharma, B., Khare, R., Gaikwad, S., Wijesundara, D.S.A., Tang, L.Z., He, M.Q., Flakus, A., Rodriguez-Flakus, P., Zhurbenko, M.P., McKenzie, E.H.C., Stadler, M., Bhat, D.J., Liu, J.K., Raza, M., Jeewon, R., Nassonova, E.S., Prieto, M., Jayalal, R.G.U., Erdogdu, M., Yurkov, A., Schnittler, M., Shchepin, O.N., Novozhilov, Y.K., Silva-Filho, A.G.S., Gentekaki, E., Liu, P., Cavender, J.C., Kang, Y., Mohammad, S., Zhang, L.F., Xu, R.F., Li, Y.M., Dayarathne, M.C., Ekanayaka, A.H., Wen, T.C., Deng, C.Y., Pereira, O.L., Navathe, S., Hawksworth, D.L., Fan, X.L., Dissanayake, L.S., Kuhnert, E. & Thines, M. (2020) Outline of Fungi and fungus-like taxa. Mycosphere 11: 1060–1456. https://doi.org/10.5943/mycosphere/11/1/8
Zhang, H., Li, J., Zhou, H., Chen, Z., Song, G., Peng, Z. & Varzea, V.M.P. (2014) Arabica coffee production in the Yunnan Province of China. In 24th International Conference on Coffee Science.
Zoller, S., Scheidegger, C. & Sperisen, C. (1999) PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes. The Lichenologist 31 (5): 511–516. https://doi.org/10.1006/lich.1999.0220